Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,727,504	A→G	T132A (ACT→GCT)	lhr →	Lhr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,727,504	0	A	G	100.0%	546.9 / NA	173	T132A (ACT→GCT)	lhr	Lhr
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (84/89); total (84/89)

Only 100 of 180 total aligned reads displayed.

CAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTACTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGAT  >  NC_000913/1727414‑1727592

cAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCt                                                                                        >  2:874904/1‑93 (MQ=255)

 aGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTg                                                                                       <  1:5944855/93‑1 (MQ=255)

 aGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTg                                                                                       <  1:5944854/93‑1 (MQ=255)

  gcgcAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTgg                                                                                      >  2:5313312/1‑93 (MQ=255)

   cgcAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGc                                                                                     <  1:4699110/93‑1 (MQ=255)

    gcAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCg                                                                                    >  2:7365835/1‑93 (MQ=255)

      aaCTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGAt                                                                                  >  2:7877964/1‑93 (MQ=255)

      aaCTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGGGCTGGCGAt                                                                                  >  2:2776870/1‑93 (MQ=255)

       aCTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATa                                                                                 <  2:708730/93‑1 (MQ=255)

       aCTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATa                                                                                 >  2:4851626/1‑93 (MQ=255)

         ttGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACg                                                                               <  2:1625502/93‑1 (MQ=255)

          tGCAGACCCCGTTGAAGAGTAATGCCGATGAACGGCGGAGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGc                                                                              <  2:7839657/93‑1 (MQ=255)

           gCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGcc                                                                             <  2:4637432/93‑1 (MQ=255)

            cAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCt                                                                            >  1:414190/1‑93 (MQ=255)

            cAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCt                                                                            <  2:9340695/93‑1 (MQ=255)

            cAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAAGCTTCGCGTAGGGATCCGTGCTGGCGATACGCCt                                                                            >  1:9677734/1‑93 (MQ=255)

             aGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTg                                                                           <  2:4513583/93‑1 (MQ=255)

              gATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGc                                                                          >  1:2601032/1‑93 (MQ=255)

              gATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGc                                                                          >  1:5483330/1‑93 (MQ=255)

              gATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGc                                                                          >  2:8580543/1‑93 (MQ=255)

               aTCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGca                                                                         >  1:4578489/1‑93 (MQ=255)

               aTCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGca                                                                         >  1:6796081/1‑93 (MQ=255)

                tCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGcac                                                                        <  1:3265462/93‑1 (MQ=255)

                tCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGcac                                                                        <  2:4775305/93‑1 (MQ=255)

                     ttGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGaa                                                                   <  1:583012/93‑1 (MQ=255)

                      tGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAAc                                                                  >  2:4045233/1‑93 (MQ=255)

                       gAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACg                                                                 >  1:4636372/1‑93 (MQ=255)

                        aaGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGGACgc                                                                >  2:8313248/1‑93 (MQ=255)

                        aaGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgc                                                                >  2:8313247/1‑93 (MQ=255)

                        aaGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgc                                                                <  2:7514248/93‑1 (MQ=255)

                         aGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgca                                                               >  2:526991/1‑93 (MQ=255)

                         aGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgca                                                               <  1:251130/93‑1 (MQ=255)

                         aGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgca                                                               <  2:9144924/93‑1 (MQ=255)

                           ggTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgcagc                                                             >  1:6118017/1‑93 (MQ=255)

                           ggTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgcagc                                                             >  1:9827021/1‑93 (MQ=255)

                           ggTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACgcagc                                                             >  1:3934548/1‑93 (MQ=255)

                             tATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCaa                                                           >  2:2357587/1‑93 (MQ=255)

                              aTTGCCGATGAACGGCGGCGGCGCGGCGGAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCaaa                                                          <  1:8964760/93‑1 (MQ=255)

                              aTTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCaaa                                                          <  1:719763/93‑1 (MQ=255)

                               ttGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAAc                                                         <  1:7576343/93‑1 (MQ=255)

                               ttGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAAc                                                         >  1:6211960/1‑93 (MQ=255)

                                tGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACt                                                        >  2:5720771/1‑93 (MQ=255)

                                 gCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTc                                                       >  2:1921930/1‑93 (MQ=255)

                                  ccGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCa                                                      <  2:5785626/93‑1 (MQ=255)

                                  ccGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCa                                                      <  1:9557253/93‑1 (MQ=255)

                                  ccGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCa                                                      >  2:3379679/1‑93 (MQ=255)

                                   cGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAc                                                     <  1:4272733/93‑1 (MQ=255)

                                   cGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAc                                                     <  2:3802069/93‑1 (MQ=255)

                                   cGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAc                                                     <  2:2477980/93‑1 (MQ=255)

                                    gaggAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAcc                                                    <  2:97743/90‑1 (MQ=255)

                                    gATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAcc                                                    <  2:1971267/93‑1 (MQ=255)

                                    gATGAACGGCGGCGGCGCGACGAAACGGAAGTCAATCTTCGCGTAAGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAcc                                                    >  2:4112230/1‑93 (MQ=255)

                                      tGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCg                                                  >  2:328159/1‑93 (MQ=255)

                                        aaCGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTa                                                >  2:1853355/1‑93 (MQ=255)

                                         aCGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTaa                                               <  1:4370629/93‑1 (MQ=255)

                                           ggcggcggcGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATc                                             <  2:8691857/93‑1 (MQ=255)

                                            gcggcggcgCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATcc                                            >  1:5161031/1‑93 (MQ=255)

                                               gcggcgcggcGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATccgcc                                         >  2:9476402/1‑93 (MQ=255)

                                                 ggcgcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCgg                                       <  2:8107347/93‑1 (MQ=255)

                                                 ggcgcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCgg                                       <  2:5993896/93‑1 (MQ=255)

                                                  gcgcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGa                                      <  2:4256234/93‑1 (MQ=255)

                                                  gcgcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGa                                      <  2:4256233/93‑1 (MQ=255)

                                                  gcgcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGa                                      >  2:3023190/1‑93 (MQ=255)

                                                   cgcggcgAAACGGAAGTCAATCGTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGat                                     <  2:6961804/93‑1 (MQ=255)

                                                    gcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGata                                    >  1:8342009/1‑93 (MQ=255)

                                                    gcggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGata                                    <  2:825126/93‑1 (MQ=255)

                                                     cggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGatat                                   <  1:9194244/93‑1 (MQ=255)

                                                     cggcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGatat                                   >  1:5286135/1‑93 (MQ=255)

                                                       gcgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTc                                 <  2:2589361/93‑1 (MQ=255)

                                                        cgAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCt                                <  1:4126805/93‑1 (MQ=255)

                                                         gAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTg                               >  1:368577/1‑93 (MQ=255)

                                                             cGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATca                           <  1:7931494/93‑1 (MQ=255)

                                                             cGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATca                           <  1:10012811/93‑1 (MQ=255)

                                                              ggAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCTCCCGTAATCCGCCGGATATTCTGATcac                          <  1:1381003/93‑1 (MQ=255)

                                                                aaGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATcacca                        >  1:9406791/1‑93 (MQ=255)

                                                                aaGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATcacca                        >  1:9050329/1‑93 (MQ=255)

                                                                aaGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATcacca                        >  1:6240549/1‑93 (MQ=255)

                                                                 aGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATcaccac                       >  2:6078552/1‑93 (MQ=255)

                                                                 aGTCAATCTTCGCGTAGGGATCCGTACTGGCGATACGCCTGCACGGGAACGCAGCAAGCTCACCGGTAATCCGAAGGATATTCTGATcaccac                       <  2:6415593/93‑1 (MQ=255)

                                                                  gTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACcaca                      >  1:5437791/1‑93 (MQ=255)

                                                                    cAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACAcc                    <  2:7745880/93‑1 (MQ=255)

                                                                     aaTCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACAccc                   <  2:5623843/93‑1 (MQ=255)

                                                                     aaTCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACAccc                   >  2:8456964/1‑93 (MQ=255)

                                                                     aaTCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACAccc                   >  1:1789982/1‑93 (MQ=255)

                                                                       tCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGa                 >  2:7178925/1‑93 (MQ=255)

                                                                              gTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCActc          >  1:1108540/1‑93 (MQ=255)

                                                                              gTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCActc          <  2:1090966/93‑1 (MQ=255)

                                                                               tAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCActct         <  1:2520319/93‑1 (MQ=255)

                                                                               tAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCActct         <  1:2303300/93‑1 (MQ=255)

                                                                               tAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCActca         >  1:7628708/1‑92 (MQ=255)

                                                                                aGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTa        <  1:4404620/93‑1 (MQ=255)

                                                                                 gggATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTAt       <  1:8910210/93‑1 (MQ=255)

                                                                                  ggATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATc      >  1:710904/1‑93 (MQ=255)

                                                                                   gATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCt     >  1:9480607/1‑93 (MQ=255)

                                                                                   gATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCt     >  1:6709415/1‑93 (MQ=255)

                                                                                    aTCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTg    >  2:1473022/1‑93 (MQ=255)

                                                                                    aTCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTg    >  1:8818303/1‑93 (MQ=255)

                                                                                    aTCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTg    >  1:3138564/1‑93 (MQ=255)

                                                                                     tCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGa   >  2:6623909/1‑93 (MQ=255)

                                                                                     tCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGa   <  2:1046410/93‑1 (MQ=255)

CAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTACTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGAT  >  NC_000913/1727414‑1727592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTACTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGATGCT  >  NC_000913/1727411‑1727595

GTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACTGAAGTCAATCTTCGCGTAGGGATCCGTG                                                                                             >  SRR4302540.896046/1‑94 (MQ=60)

GTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTG                                                                                             >  SRR4302540.6777378/1‑94 (MQ=60)

GTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGAGGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTG                                                                                             <  SRR4302540.4064831/94‑1 (MQ=60)

 TTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGGGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGC                                                                                            >  SRR4302540.737430/1‑94 (MQ=60)

   CAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTG                                                                                          >  SRR4302540.7224895/1‑94 (MQ=60)

    AGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGG                                                                                         <  SRR4302540.6010569/94‑1 (MQ=60)

    AGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGG                                                                                         <  SRR4302540.6010570/94‑1 (MQ=60)

      CGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCG                                                                                       <  SRR4302540.4749338/94‑1 (MQ=60)

      CGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCG                                                                                       <  SRR4302540.3279104/94‑1 (MQ=60)

       GCAACTTGCAGACCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGA                                                                                      <  SRR4302540.5508403/94‑1 (MQ=60)

        CAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGAT                                                                                     >  SRR4302540.4108920/1‑94 (MQ=60)

             TGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCC                                                                                <  SRR4302540.5703048/94‑1 (MQ=60)

              GCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCT                                                                               >  SRR4302540.418527/1‑94 (MQ=60)

              GCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCT                                                                               >  SRR4302540.418526/1‑94 (MQ=60)

              GCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAAGCTTCGCGTAGGGATCCGTGCTGGCGATACGCCT                                                                               >  SRR4302540.9791595/1‑94 (MQ=60)

               CAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTGGCGTAGGGATCCGGGCTGGCGCTCCGCCTG                                                                              >  SRR4302540.7536588/1‑94 (MQ=60)

                AGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGC                                                                             >  SRR4302540.2629084/1‑94 (MQ=60)

                AGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGC                                                                             >  SRR4302540.5543696/1‑94 (MQ=60)

                 GATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCA                                                                            >  SRR4302540.6871248/1‑94 (MQ=60)

                 GATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCA                                                                            >  SRR4302540.4627861/1‑94 (MQ=60)

                   TCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACA                                                                          <  SRR4302540.3301089/94‑1 (MQ=60)

                        TTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAAC                                                                     <  SRR4302540.589314/94‑1 (MQ=60)

                         TGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACG                                                                    >  SRR4302540.4686014/1‑94 (MQ=60)

                           AAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCA                                                                  >  SRR4302540.9582467/1‑94 (MQ=60)

                            AGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAG                                                                 <  SRR4302540.253562/94‑1 (MQ=60)

                            AGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAG                                                                 >  SRR4302540.7945588/1‑94 (MQ=60)

                            AGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAG                                                                 >  SRR4302540.5490771/1‑94 (MQ=60)

                            AGGGGATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGCGGATACGCCTGCACAGGAACGCAG                                                                 >  SRR4302540.8769664/1‑94 (MQ=60)

                             GGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGC                                                                >  SRR4302540.6186153/1‑94 (MQ=60)

                             GGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGC                                                                >  SRR4302540.9941974/1‑94 (MQ=60)

                             GGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGC                                                                >  SRR4302540.3977081/1‑94 (MQ=60)

                                 ATTGCCGATGAACGGCGGCGGCGCGGCGGAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAAC                                                            <  SRR4302540.9070958/94‑1 (MQ=60)

                                 ATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAAC                                                            >  SRR4302540.6281084/1‑94 (MQ=60)

                                 ATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAAC                                                            <  SRR4302540.727481/94‑1 (MQ=60)

                                 ATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAAC                                                            <  SRR4302540.9176879/94‑1 (MQ=60)

                                  TTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACT                                                           <  SRR4302540.7661356/94‑1 (MQ=60)

                                    GCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCA                                                         <  SRR4302540.3084577/94‑1 (MQ=60)

                                     CCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCAC                                                        <  SRR4302540.9670266/94‑1 (MQ=60)

                                      CGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACC                                                       <  SRR4302540.4319199/94‑1 (MQ=60)

                                       GATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCC                                                      <  SRR4302540.4392607/94‑1 (MQ=60)

                                            ACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAAT                                                 <  SRR4302540.4418109/94‑1 (MQ=60)

                                             CGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATC                                                >  SRR4302540.115216/1‑94 (MQ=60)

                                              GGCGGCGGCGCGGCGAAACGGAAGTCCATTTTCGCGTAGGGATCCGTGATGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCC                                               <  SRR4302540.6080779/94‑1 (MQ=60)

                                              GGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCC                                               >  SRR4302540.5217138/1‑94 (MQ=60)

                                              GGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCC                                               <  SRR4302540.904930/94‑1 (MQ=60)

                                                GGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGC                                             <  SRR4302540.8641647/94‑1 (MQ=60)

                                                      CGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATA                                       >  SRR4302540.8438833/1‑94 (MQ=60)

                                                      CGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATA                                       <  SRR4302540.473059/94‑1 (MQ=60)

                                                       GCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATAT                                      >  SRR4302540.5343896/1‑94 (MQ=60)

                                                        CGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATT                                     >  SRR4302540.8058329/1‑94 (MQ=60)

                                                        CGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATT                                     <  SRR4302540.9304526/94‑1 (MQ=60)

                                                         GGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTC                                    <  SRR4302540.8989830/94‑1 (MQ=60)

                                                           CGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTG                                  >  SRR4302540.372376/1‑94 (MQ=60)

                                                           CGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTG                                  <  SRR4302540.4171390/94‑1 (MQ=60)

                                                           CGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTG                                  <  SRR4302540.5168113/94‑1 (MQ=60)

                                                              AACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATC                               <  SRR4302540.6930512/94‑1 (MQ=60)

                                                               ACGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCA                              <  SRR4302540.6670120/94‑1 (MQ=60)

                                                                CGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCAC                             <  SRR4302540.4647139/94‑1 (MQ=60)

                                                                CGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCAC                             <  SRR4302540.8023942/94‑1 (MQ=60)

                                                                CGGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCAC                             <  SRR4302540.10129391/94‑1 (MQ=60)

                                                                 GGAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCTCCCGTAATCCGCCGGATATTCTGATCACC                            <  SRR4302540.1395742/94‑1 (MQ=60)

                                                                  GGAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCA                           >  SRR4302540.6309993/1‑94 (MQ=60)

                                                                  GAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCA                           <  SRR4302540.9608268/94‑1 (MQ=60)

                                                                  GAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCA                           >  SRR4302540.9158971/1‑94 (MQ=60)

                                                                  GAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCA                           >  SRR4302540.9518664/1‑94 (MQ=60)

                                                                  GAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCA                           >  SRR4302540.6309994/1‑94 (MQ=60)

                                                                  GAAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCA                           >  SRR4302540.2209480/1‑94 (MQ=60)

                                                                   AAGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCAC                          <  SRR4302540.4197495/94‑1 (MQ=60)

                                                                    AGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACA                         >  SRR4302540.5497610/1‑94 (MQ=60)

                                                                    AGTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACA                         >  SRR4302540.6270290/1‑94 (MQ=60)

                                                                     GTCAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACAC                        <  SRR4302540.4461395/94‑1 (MQ=60)

                                                                       CAATCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCC                      >  SRR4302540.1809436/1‑94 (MQ=60)

                                                                          TCTTCGCGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAA                   <  SRR4302540.1801725/94‑1 (MQ=60)

                                                                                CGTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTC             >  SRR4302540.1119996/1‑94 (MQ=60)

                                                                                 GTAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCA            >  SRR4302540.7714502/1‑94 (MQ=60)

                                                                                  TAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTA           >  SRR4302540.3467555/1‑94 (MQ=60)

                                                                                  TAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTA           <  SRR4302540.8533921/94‑1 (MQ=60)

                                                                                  TAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTA           <  SRR4302540.2328080/94‑1 (MQ=60)

                                                                                  TAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTA           <  SRR4302540.2547537/94‑1 (MQ=60)

                                                                                  TAGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTA           <  SRR4302540.2547536/94‑1 (MQ=60)

                                                                                   AGGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTAT          <  SRR4302540.4452379/94‑1 (MQ=60)

                                                                                    GGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATC         <  SRR4302540.9013388/94‑1 (MQ=60)

                                                                                    GGGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATC         >  SRR4302540.718541/1‑94 (MQ=60)

                                                                                     GGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCT        >  SRR4302540.9593031/1‑94 (MQ=60)

                                                                                     GGATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCT        >  SRR4302540.6783454/1‑94 (MQ=60)

                                                                                      GATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTG       >  SRR4302540.8920260/1‑94 (MQ=60)

                                                                                      GATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTG       <  SRR4302540.9373057/94‑1 (MQ=60)

                                                                                      GATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTG       >  SRR4302540.3172794/1‑94 (MQ=60)

                                                                                       ATCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGA      >  SRR4302540.2481583/1‑94 (MQ=60)

                                                                                        TCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGAT     <  SRR4302540.9941115/94‑1 (MQ=60)

                                                                                        TCCGTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGAT     <  SRR4302540.5944154/94‑1 (MQ=60)

                                                                                           GTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGATGCT  >  SRR4302540.751841/1‑94 (MQ=60)

                                                                                           GTGCTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGATGCT  >  SRR4302540.6329078/1‑94 (MQ=60)

GTTCAGCGCAACTTGCAGATCCCGTTGAAGGGTATTGCCGATGAACGGCGGCGGCGCGGCGAAACGGAAGTCAATCTTCGCGTAGGGATCCGTACTGGCGATACGCCTGCACAGGAACGCAGCAAACTCACCCGTAATCCGCCGGATATTCTGATCACCACACCCGAATCACTCTATCTGATGCT  >  NC_000913/1727411‑1727595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`