Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,791,400 T→C Q61Q (CAA→CAG)  btuD ← ATP‑binding component of vitamin B12 transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,791,4000TC100.0% 533.9 / NA 169Q61Q (CAA→CAG) btuDATP‑binding component of vitamin B12 transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (79/90);  total (79/90)

Only 100 of 175 total aligned reads displayed.

CAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCAC  >  NC_000913/1791311‑1791489
                                                                                         |                                                                                         
 aGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcc                                                                                       >  2:3581048/1‑93 (MQ=255)
   aCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcccc                                                                                     <  2:2795952/93‑1 (MQ=255)
   aCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGcccc                                                                                     >  2:5043923/1‑93 (MQ=255)
   aCCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTCcccc                                                                                     <  2:6494247/93‑1 (MQ=255)
    ccGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCcg                                                                                    >  1:3731414/1‑93 (MQ=255)
     cGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCcgc                                                                                   >  2:5478188/1‑93 (MQ=255)
       gCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGa                                                                                 >  2:5346949/1‑93 (MQ=255)
       gCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGAGCGTTGCAGAGCTAGCTTTGTTGCGCACCATGCTTCCAGTAGCGGCCCcgcta                                                                                 >  2:4658403/1‑91 (MQ=255)
        cGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGaa                                                                                <  1:6978660/93‑1 (MQ=255)
         gTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAc                                                                               >  1:3248874/1‑93 (MQ=255)
          ttGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACt                                                                              <  1:9406398/93‑1 (MQ=255)
          ttGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACt                                                                              >  1:1280686/1‑93 (MQ=255)
          ttGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACt                                                                              >  1:1384205/1‑93 (MQ=255)
          ttGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACt                                                                              >  1:6208565/1‑93 (MQ=255)
          ttGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACt                                                                              >  2:7853276/1‑93 (MQ=255)
           tGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTg                                                                             >  1:5699590/1‑93 (MQ=255)
              aaaCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAAt                                                                          <  2:1277930/93‑1 (MQ=255)
               aaCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATg                                                                         <  1:6906352/93‑1 (MQ=255)
                 cggcggCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCt                                                                       <  2:6068924/93‑1 (MQ=255)
                  ggcggcGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCtt                                                                      <  1:7642170/93‑1 (MQ=255)
                  ggcggcGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCtt                                                                      <  1:7642169/93‑1 (MQ=255)
                     ggcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTccc                                                                   <  1:6951697/93‑1 (MQ=255)
                     ggcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTccc                                                                   <  2:6057303/93‑1 (MQ=255)
                     ggcgTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTccc                                                                   >  2:9189597/1‑93 (MQ=255)
                        gTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGGACTGAATGCTTCCCttc                                                                >  2:8752451/1‑92 (MQ=255)
                        gTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTa                                                                >  2:4278320/1‑93 (MQ=255)
                        gTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTa                                                                >  2:8841938/1‑93 (MQ=255)
                         tCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAc                                                               >  2:973862/1‑93 (MQ=255)
                         tCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAc                                                               <  1:548315/93‑1 (MQ=255)
                          ctgctgTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTAcc                                                              <  1:8721136/93‑1 (MQ=255)
                             ctgTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCt                                                           >  2:10003042/1‑93 (MQ=255)
                              tgttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTg                                                          <  1:1518182/93‑1 (MQ=255)
                               gttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTgg                                                         <  2:1922110/93‑1 (MQ=255)
                               gttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTgg                                                         >  1:4234395/1‑93 (MQ=255)
                               gttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTgg                                                         >  1:4073246/1‑93 (MQ=255)
                               gttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTgg                                                         <  1:323083/93‑1 (MQ=255)
                                ttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGt                                                        >  1:8007005/1‑93 (MQ=255)
                                ttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGt                                                        >  1:1261885/1‑93 (MQ=255)
                                  gtgAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCa                                                      >  1:7418708/1‑93 (MQ=255)
                                     aaaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTc                                                   >  2:1599205/1‑93 (MQ=255)
                                     aaaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTc                                                   <  1:4618855/93‑1 (MQ=255)
                                       aGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCg                                                 <  1:273433/93‑1 (MQ=255)
                                        gATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCgg                                                <  2:3944530/93‑1 (MQ=255)
                                        gATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCgg                                                >  1:4793332/1‑93 (MQ=255)
                                         aTAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGc                                               >  1:6686535/1‑93 (MQ=255)
                                          tAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGcc                                              >  2:6120445/1‑93 (MQ=255)
                                          tAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACACCTGGTCATTcccgtc                                              >  2:2152008/1‑89 (MQ=255)
                                            ggCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAt                                            <  1:6706355/93‑1 (MQ=255)
                                            ggCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAt                                            <  1:1728864/93‑1 (MQ=255)
                                             gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                           <  1:7690874/93‑1 (MQ=255)
                                             gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                           <  1:3892698/93‑1 (MQ=255)
                                             gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                           >  1:8381922/1‑93 (MQ=255)
                                             gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                           <  1:5634864/93‑1 (MQ=255)
                                             gcgcGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAtt                                           <  2:1697382/93‑1 (MQ=255)
                                              cgcgCTGCAGCGCGAGTTTTGTTGCGGACCATGCTGCCAGTGGCGGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTc                                          <  1:2483520/93‑1 (MQ=255)
                                              cgcgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTc                                          <  1:2595837/93‑1 (MQ=255)
                                               gcgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTcg                                         <  2:2741586/93‑1 (MQ=255)
                                                 gATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTAATTCCGGCCCTTtgcg                                       >  1:350106/1‑93 (MQ=255)
                                                   tGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGcc                                     >  1:4554728/1‑93 (MQ=255)
                                                    gCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCa                                    <  1:7848485/93‑1 (MQ=255)
                                                    gCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCa                                    <  2:8224869/93‑1 (MQ=255)
                                                       gcgcGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTa                                 >  1:797494/1‑93 (MQ=255)
                                                        cgcgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTaa                                <  2:4702630/93‑1 (MQ=255)
                                                        cgcgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTaa                                <  2:4082653/93‑1 (MQ=255)
                                                        cgcgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTaa                                <  1:4851749/93‑1 (MQ=255)
                                                         gcgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTACCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAg                               <  2:3548024/93‑1 (MQ=255)
                                                          cgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAgg                              >  2:1614894/1‑93 (MQ=255)
                                                          cgAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAgg                              <  2:8827038/93‑1 (MQ=255)
                                                           gAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGt                             <  1:5114394/93‑1 (MQ=255)
                                                            aGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTa                            <  2:1576277/93‑1 (MQ=255)
                                                             gTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAc                           <  2:28856/93‑1 (MQ=255)
                                                             gTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAc                           >  2:7020856/1‑93 (MQ=255)
                                                              ttttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAct                          >  1:7219990/1‑93 (MQ=255)
                                                               tttGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTActc                         <  2:1924980/93‑1 (MQ=255)
                                                                 tgttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCtt                       <  2:727163/93‑1 (MQ=255)
                                                                  tttgCGGACCATGCTTCCAGTGGCTGCCCCGCTAACTGAATGCTTCCCTTATCGCTGGTCATTCTGGCCATTCGCGCCATTAAGGTACTCTTa                      >  1:8974493/2‑93 (MQ=255)
                                                                  gttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTa                      >  1:8250498/1‑93 (MQ=255)
                                                                  gttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTa                      <  1:4957918/93‑1 (MQ=255)
                                                                  gttgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTa                      <  2:4863773/93‑1 (MQ=255)
                                                                    tgCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAcc                    <  1:5922733/93‑1 (MQ=255)
                                                                     gCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTTCCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAccc                   >  2:7269357/1‑93 (MQ=255)
                                                                     gCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAccc                   >  2:8481351/1‑93 (MQ=255)
                                                                     gCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAccc                   <  1:2128055/93‑1 (MQ=255)
                                                                     gCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAccc                   >  1:1176551/1‑93 (MQ=255)
                                                                     gCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAccc                   <  2:1779503/93‑1 (MQ=255)
                                                                       ggACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgc                 >  2:5943953/1‑93 (MQ=255)
                                                                        gACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgcg                <  2:6501562/93‑1 (MQ=255)
                                                                        gACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgcg                <  1:3771290/93‑1 (MQ=255)
                                                                        gACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCcgcg                >  1:9089216/1‑93 (MQ=255)
                                                                          ccATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGcc              <  1:2379072/93‑1 (MQ=255)
                                                                          ccATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGcc              >  1:6297967/1‑93 (MQ=255)
                                                                            aTGCTTCCAGTGGCTGCCGCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGGAAGGTACTCTTACCCGCGCCAt            <  2:6436184/93‑1 (MQ=255)
                                                                             tGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCAtt           <  1:7459890/93‑1 (MQ=255)
                                                                              tcTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTc          <  2:2600786/92‑1 (MQ=255)
                                                                              gCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTc          >  2:6777048/1‑93 (MQ=255)
                                                                                 tCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGc       >  1:2991691/1‑93 (MQ=255)
                                                                                    aGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGcccc    >  2:1167062/1‑93 (MQ=255)
                                                                                     gTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCcca   >  2:7297538/1‑93 (MQ=255)
                                                                                     gTGGCTGCCCCGCCACCTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCcca   <  2:8777006/93‑1 (MQ=255)
                                                                                      tGGCTGCCCCGCGAACTGAATGCTTCCCTTAACGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCccac  >  2:4437697/1‑93 (MQ=255)
                                                                                         |                                                                                         
CAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCAC  >  NC_000913/1791311‑1791489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCA  >  NC_000913/1791307‑1791491
                                                                                             |                                                                                           
GTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGC                                                                                             >  SRR4302540.2980936/1‑94 (MQ=60)
 TGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCT                                                                                            >  SRR4302540.8108235/1‑94 (MQ=60)
  GCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTG                                                                                           <  SRR4302540.7821556/94‑1 (MQ=60)
    CAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCC                                                                                         <  SRR4302540.1315393/94‑1 (MQ=60)
      GACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCC                                                                                       <  SRR4302540.4248761/94‑1 (MQ=60)
       ACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCG                                                                                      >  SRR4302540.6515560/1‑94 (MQ=60)
       ACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCG                                                                                      >  SRR4302540.3772121/1‑94 (MQ=60)
       ACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGAGTAGAGGCAGCGCGAGATTTGTTCCGGACCATGATTCCAGTGGCTGTCCCG                                                                                      >  SRR4302540.3772120/1‑94 (MQ=46)
          GGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGA                                                                                   >  SRR4302540.7593577/1‑94 (MQ=60)
            CGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAC                                                                                 <  SRR4302540.7056188/94‑1 (MQ=60)
            CGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAAC                                                                                 >  SRR4302540.3284261/1‑94 (MQ=60)
             GTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACT                                                                                >  SRR4302540.6277667/1‑94 (MQ=60)
             GTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACT                                                                                >  SRR4302540.1398994/1‑94 (MQ=60)
             GTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACT                                                                                >  SRR4302540.1293894/1‑94 (MQ=60)
              TTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTG                                                                               >  SRR4302540.5762345/1‑94 (MQ=60)
              TTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTG                                                                               <  SRR4302540.9518267/94‑1 (MQ=60)
                   AACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGC                                                                          <  SRR4302540.6983149/94‑1 (MQ=60)
                    ACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCT                                                                         <  SRR4302540.8678630/94‑1 (MQ=60)
                    ACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCT                                                                         <  SRR4302540.3747328/94‑1 (MQ=60)
                     CGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTT                                                                        <  SRR4302540.6335283/94‑1 (MQ=60)
                      GGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTC                                                                       <  SRR4302540.7728180/94‑1 (MQ=60)
                      GGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTC                                                                       <  SRR4302540.7728179/94‑1 (MQ=60)
                        CGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCC                                                                     <  SRR4302540.1835870/94‑1 (MQ=60)
                        CGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCC                                                                     <  SRR4302540.5208058/94‑1 (MQ=60)
                         GGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCT                                                                    <  SRR4302540.7029047/94‑1 (MQ=60)
                           CGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTA                                                                  >  SRR4302540.4073218/1‑94 (MQ=60)
                             TCTGCTGTTGTGAAAGATAGGCGGGATGCAACGCGAGTTTTGTTGCGGAACATGCTTCGAGTGGCTGCCCCGCGAAGTGAAATCTTCCCTTACC                                                                >  SRR4302540.6983214/1‑94 (MQ=60)
                             TCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACC                                                                >  SRR4302540.6983479/1‑94 (MQ=60)
                             TCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACC                                                                >  SRR4302540.4875628/1‑94 (MQ=60)
                             TCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACC                                                                <  SRR4302540.554288/94‑1 (MQ=60)
                              CTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCG                                                               <  SRR4302540.8822399/94‑1 (MQ=60)
                               TGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGC                                                              <  SRR4302540.8219266/94‑1 (MQ=60)
                                GCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCT                                                             >  SRR4302540.8038802/1‑94 (MQ=60)
                                  TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGG                                                           <  SRR4302540.1534978/94‑1 (MQ=60)
                                  TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGG                                                           <  SRR4302540.3230163/94‑1 (MQ=60)
                                  TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGG                                                           >  SRR4302540.4117151/1‑94 (MQ=60)
                                  TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGG                                                           >  SRR4302540.9135796/1‑94 (MQ=60)
                                  TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGG                                                           >  SRR4302540.4280474/1‑94 (MQ=60)
                                   GTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGT                                                          >  SRR4302540.1274835/1‑94 (MQ=60)
                                   GTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGT                                                          <  SRR4302540.326316/94‑1 (MQ=60)
                                   GTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGT                                                          >  SRR4302540.8100179/1‑94 (MQ=60)
                                    TTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTC                                                         >  SRR4302540.7045855/1‑94 (MQ=60)
                                    TTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTC                                                         >  SRR4302540.1517160/1‑94 (MQ=60)
                                     TGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCA                                                        >  SRR4302540.7501344/1‑94 (MQ=60)
                                      TTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCAT                                                       <  SRR4302540.5718408/94‑1 (MQ=60)
                                         AAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGCACTGAATGCTTCCCTTACCGCcaggccttcc                                                    >  SRR4302540.9372031/1‑84 (MQ=60)
                                         AAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCC                                                    <  SRR4302540.4668379/94‑1 (MQ=60)
                                         AAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCC                                                    >  SRR4302540.4999396/1‑94 (MQ=60)
                                           AGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGG                                                  >  SRR4302540.4844602/1‑94 (MQ=60)
                                           AGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGG                                                  <  SRR4302540.276122/94‑1 (MQ=60)
                                            GATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGC                                                 >  SRR4302540.6760368/1‑94 (MQ=60)
                                                GGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATT                                             <  SRR4302540.5609197/94‑1 (MQ=60)
                                                GGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATT                                             <  SRR4302540.6780368/94‑1 (MQ=60)
                                                GGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATT                                             >  SRR4302540.8479179/1‑94 (MQ=60)
                                                GGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATT                                             <  SRR4302540.1747523/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACTATGCTTCCAGTGGCTTCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                            <  SRR4302540.7778128/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                            <  SRR4302540.5696883/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                            <  SRR4302540.7778301/94‑1 (MQ=60)
                                                 GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                            <  SRR4302540.3934956/94‑1 (MQ=60)
                                                  CGCGCTGCAGCGCGAGTTTTGTTGCGGACCATGCTGCCAGTGGCGGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCG                                           <  SRR4302540.2510279/94‑1 (MQ=60)
                                                  CGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCG                                           <  SRR4302540.7507682/94‑1 (MQ=60)
                                                  CGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCG                                           <  SRR4302540.2623831/94‑1 (MQ=60)
                                                   GCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGC                                          <  SRR4302540.3510024/94‑1 (MQ=60)
                                                    CGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTAATTCCGGCCCTTTGCG                                         >  SRR4302540.353683/1‑94 (MQ=60)
                                                      ATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCC                                       >  SRR4302540.4603977/1‑94 (MQ=60)
                                                       TGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCA                                      >  SRR4302540.2871367/1‑94 (MQ=60)
                                                       TGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGGCATTCCGGCCATTCGCGCCA                                      >  SRR4302540.2440480/1‑94 (MQ=60)
                                                        GCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAG                                     <  SRR4302540.7940193/94‑1 (MQ=60)
                                                          AGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTA                                   >  SRR4302540.2738398/1‑94 (MQ=60)
                                                          AGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTA                                   >  SRR4302540.805966/1‑94 (MQ=60)
                                                            CGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAG                                 <  SRR4302540.4903742/94‑1 (MQ=60)
                                                            CGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAG                                 <  SRR4302540.1291766/94‑1 (MQ=60)
                                                             GCGAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGG                                >  SRR4302540.379527/1‑94 (MQ=60)
                                                               GAGTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTA                              <  SRR4302540.5169758/94‑1 (MQ=60)
                                                                 GTTTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACT                            >  SRR4302540.7300464/1‑94 (MQ=60)
                                                                   TTTGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCT                          <  SRR4302540.6960928/94‑1 (MQ=60)
                                                                     TTTTGCGGACCATGCTTCCAGTGGCTGCCCCGCTAACTGAATGCTTCCCTTATCGCTGGTCATTCTGGCCATTCGCGCCATTAAGGTACTCTTA                        >  SRR4302540.9081203/1‑94 (MQ=60)
                                                                     TGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTA                        >  SRR4302540.8346398/1‑94 (MQ=60)
                                                                     TGTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTA                        >  SRR4302540.6027864/1‑94 (MQ=60)
                                                                      GTTGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAC                       <  SRR4302540.5011500/94‑1 (MQ=60)
                                                                        TGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCC                     <  SRR4302540.5988173/94‑1 (MQ=60)
                                                                        TGCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCC                     >  SRR4302540.1188711/1‑94 (MQ=60)
                                                                         GCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCG                    <  SRR4302540.2150887/94‑1 (MQ=60)
                                                                         GCGGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCG                    <  SRR4302540.2150886/94‑1 (MQ=60)
                                                                           GGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCG                  >  SRR4302540.9211323/1‑94 (MQ=60)
                                                                           GGACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCG                  >  SRR4302540.9198407/1‑94 (MQ=60)
                                                                            GACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGC                 <  SRR4302540.3812436/94‑1 (MQ=60)
                                                                             ACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCC                <  SRR4302540.7913358/94‑1 (MQ=60)
                                                                             ACCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCC                >  SRR4302540.6368101/1‑94 (MQ=60)
                                                                              CCATGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCA               <  SRR4302540.2404706/94‑1 (MQ=60)
                                                                                 TGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTC            <  SRR4302540.7543070/94‑1 (MQ=60)
                                                                                 TGCTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTC            >  SRR4302540.841018/1‑94 (MQ=60)
                                                                                   CTTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGG          <  SRR4302540.4824657/94‑1 (MQ=60)
                                                                                    TTCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGC         >  SRR4302540.3024671/1‑94 (MQ=60)
                                                                                     TCCAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCC        <  SRR4302540.4294573/94‑1 (MQ=60)
                                                                                       CAGTGGCTGCCCCGCGAACTGAATGCTTCCCTTCCCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCC      <  SRR4302540.7333724/94‑1 (MQ=60)
                                                                                         GTGGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCAC    >  SRR4302540.9524251/1‑94 (MQ=60)
                                                                                           GGCTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCA  <  SRR4302540.3987950/94‑1 (MQ=60)
                                                                                             |                                                                                           
GTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCA  >  NC_000913/1791307‑1791491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑