Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
1,808,078 |
A→G |
intergenic (+6/‑157) |
yniC → / → b1728 |
putative phosphatase/hypothetical protein |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 1,808,078 | 0 | A | G | 99.4%
| 994.9
/ ‑3.7
| 311 | intergenic (+6/‑157) | yniC/b1728 | putative phosphatase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (165/144); total (166/145) |
Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.50e-01 |
Only 100 of 322 total aligned reads displayed.
AGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACC > NC_000913/1807988‑1808167
|
gcgcAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCgggg < 1:309217/93‑1 (MQ=255)
cgcAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGgggg < 2:2826653/93‑1 (MQ=255)
cAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCa < 2:5293813/93‑1 (MQ=255)
aaaTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGt < 1:7375573/93‑1 (MQ=255)
aTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGa < 1:8743889/93‑1 (MQ=255)
tGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAt > 2:26202/1‑93 (MQ=255)
tGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAt < 1:5348129/93‑1 (MQ=255)
gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc > 1:500494/1‑93 (MQ=255)
gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc > 2:8821800/1‑93 (MQ=255)
gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc < 1:6548318/93‑1 (MQ=255)
gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc > 2:4774195/1‑93 (MQ=255)
gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc < 2:1765161/93‑1 (MQ=255)
ccACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCg > 1:7752501/1‑93 (MQ=255)
ccACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCg > 2:8566412/1‑93 (MQ=255)
cACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGc > 2:9032710/1‑93 (MQ=255)
cACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGc < 2:4187782/93‑1 (MQ=255)
aCGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCt > 2:10042298/1‑93 (MQ=255)
cGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTg > 2:9654349/1‑93 (MQ=255)
cGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTg > 1:1815178/1‑93 (MQ=255)
gTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGc > 1:6652010/1‑93 (MQ=255)
gTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGc < 1:4348213/93‑1 (MQ=255)
ttttGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGcc > 2:8210822/1‑93 (MQ=255)
tttGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGccc > 1:1602506/1‑93 (MQ=255)
ttGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGcccc < 1:958637/93‑1 (MQ=255)
ttGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGcccc > 1:1944932/1‑93 (MQ=255)
ttGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGcccc < 2:3417303/93‑1 (MQ=255)
tGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCt < 2:940236/93‑1 (MQ=255)
tGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCt < 2:4490570/93‑1 (MQ=255)
tGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCt < 2:2770844/93‑1 (MQ=255)
tATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTgg > 1:1500580/1‑93 (MQ=255)
aTTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGt < 2:3918531/93‑1 (MQ=255)
ttAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGtt > 1:5755816/1‑93 (MQ=255)
aGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCt < 2:169511/93‑1 (MQ=255)
aGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCt < 1:3883088/93‑1 (MQ=255)
cAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCttt > 1:3320313/1‑93 (MQ=255)
aGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTa > 2:7428752/1‑93 (MQ=255)
gACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAt > 2:6988250/1‑93 (MQ=255)
tCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGa < 1:9477968/93‑1 (MQ=255)
cAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaa < 2:5490708/93‑1 (MQ=255)
cAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaa > 1:5142552/1‑93 (MQ=255)
aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa < 1:3738312/93‑1 (MQ=255)
aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa < 2:3186789/93‑1 (MQ=255)
aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa < 2:8311194/93‑1 (MQ=255)
aaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAt < 1:9947028/93‑1 (MQ=255)
aaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAt > 2:7576253/1‑93 (MQ=255)
aCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAtt < 1:9131284/93‑1 (MQ=255)
aCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAtt < 2:4743312/93‑1 (MQ=255)
cTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTg > 1:4633330/1‑93 (MQ=255)
tttCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGc > 2:6718339/1‑93 (MQ=255)
tCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAt > 1:9674851/1‑93 (MQ=255)
tCATCGCTGACAGAACGCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAt > 2:9555795/1‑93 (MQ=255)
cATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAtt < 1:8323733/93‑1 (MQ=255)
aTCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTc < 2:2924209/93‑1 (MQ=255)
aTCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTc > 1:7060794/1‑93 (MQ=255)
tCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCa < 1:2272646/93‑1 (MQ=255)
cGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCaa < 2:7154258/93‑1 (MQ=255)
gCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAc < 1:7940740/93‑1 (MQ=255)
gCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAc < 1:2397505/93‑1 (MQ=255)
gCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAc > 2:7999219/1‑93 (MQ=255)
cTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGCAATTGCATTCAACt > 2:659791/1‑93 (MQ=255)
cTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACt > 1:2672683/1‑93 (MQ=255)
aCAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGAc < 2:1405214/93‑1 (MQ=255)
gAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGa > 2:6248282/1‑93 (MQ=255)
gAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGa < 2:130714/93‑1 (MQ=255)
aCTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGAtt < 2:3499542/93‑1 (MQ=255)
cTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTa > 2:8448730/1‑93 (MQ=255)
tCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTaa < 1:7538253/93‑1 (MQ=255)
tCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTaa > 1:3573304/1‑93 (MQ=255)
cACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAt > 1:2027858/1‑93 (MQ=255)
cACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAt < 2:2051396/93‑1 (MQ=255)
cACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAt > 2:3235964/1‑93 (MQ=255)
cccGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATc < 2:1974850/92‑1 (MQ=255)
ccGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGGGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTACTCg > 1:1092881/1‑93 (MQ=255)
cGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGt > 1:2897115/1‑93 (MQ=255)
gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc > 2:427239/1‑93 (MQ=255)
gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc > 1:9192041/1‑93 (MQ=255)
gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc > 2:5691095/1‑93 (MQ=255)
gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc > 1:4194632/1‑93 (MQ=255)
gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc < 1:5202625/93‑1 (MQ=255)
gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc > 1:586170/1‑93 (MQ=255)
aaaGACCTTCTTGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAt > 1:8068772/1‑93 (MQ=255)
aaaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAt < 2:3696625/93‑1 (MQ=255)
aaaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAt > 2:6519859/1‑93 (MQ=255)
aaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAtt < 1:634484/93‑1 (MQ=255)
aaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAtt > 1:6804005/1‑93 (MQ=255)
aGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAttt < 1:4300141/93‑1 (MQ=255)
ccTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAag < 2:1082369/93‑1 (MQ=255)
cTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAaga < 1:7600930/93‑1 (MQ=255)
ttCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCGCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAagag < 2:4442068/93‑1 (MQ=255)
ctcGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGaa < 2:875677/93‑1 (MQ=255)
gTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAagag > 1:6251177/1‑93 (MQ=255)
gTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAagag < 2:6314876/93‑1 (MQ=255)
ttAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGt < 2:9489235/93‑1 (MQ=255)
ttAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGt > 2:5105025/1‑93 (MQ=255)
tAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGtt > 1:4379238/1‑93 (MQ=255)
aTGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTac > 1:7211803/1‑93 (MQ=255)
aTGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTac > 2:2489786/1‑93 (MQ=255)
tGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTGTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGATaca > 2:9163252/1‑93 (MQ=255)
tGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTaca < 2:7805555/93‑1 (MQ=255)
tGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTaca > 2:9809911/1‑93 (MQ=255)
|
AGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACC > NC_000913/1807988‑1808167
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTC > NC_000913/1807985‑1808170
|
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCG > SRR4302540.2868749/1‑94 (MQ=60)
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCG < SRR4302540.1425571/94‑1 (MQ=60)
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCG > SRR4302540.390680/1‑94 (MQ=60)
AGAAGCGCAAAATGATCCACGTTGTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCG < SRR4302540.1425570/94‑1 (MQ=60)
GAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGG < SRR4302540.406037/94‑1 (MQ=60)
GCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGG < SRR4302540.7204716/94‑1 (MQ=60)
GCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGG < SRR4302540.359521/94‑1 (MQ=60)
GCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGG < SRR4302540.312285/94‑1 (MQ=60)
CGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGC > SRR4302540.2980553/1‑94 (MQ=60)
CGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGC > SRR4302540.8064503/1‑94 (MQ=60)
CGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGC > SRR4302540.9691777/1‑94 (MQ=60)
GCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCA > SRR4302540.2827053/1‑94 (MQ=60)
GCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACATTCTCGGTTAATGACCGGGGGCA > SRR4302540.4253694/1‑94 (MQ=60)
AAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTG < SRR4302540.7457775/94‑1 (MQ=60)
AAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTG < SRR4302540.7476390/94‑1 (MQ=60)
ATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAT < SRR4302540.8845375/94‑1 (MQ=60)
TGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATC > SRR4302540.505863/1‑94 (MQ=60)
TGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATC < SRR4302540.5226748/94‑1 (MQ=60)
TGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATC < SRR4302540.5406809/94‑1 (MQ=60)
TGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATC > SRR4302540.7911285/1‑94 (MQ=60)
GATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCT < SRR4302540.6620951/94‑1 (MQ=60)
ATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTC > SRR4302540.1595777/1‑94 (MQ=60)
TCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCG > SRR4302540.7843040/1‑94 (MQ=60)
TCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCG > SRR4302540.67528/1‑94 (MQ=60)
CCACGTTTTGTATTAGCAGACGTCAACCGTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGC < SRR4302540.6409590/94‑1 (MQ=60)
CCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGC > SRR4302540.8400433/1‑94 (MQ=60)
CACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCT < SRR4302540.9241516/94‑1 (MQ=60)
ACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTG < SRR4302540.6802829/94‑1 (MQ=60)
ACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTG > SRR4302540.1834996/1‑94 (MQ=60)
ACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGCGGCAGTGATCTCGCTC > SRR4302540.1834995/1‑94 (MQ=60)
CGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGC > SRR4302540.6725590/1‑94 (MQ=60)
GTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCC < SRR4302540.4395518/94‑1 (MQ=60)
TTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCC > SRR4302540.1620034/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC > SRR4302540.9003921/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC > SRR4302540.7312812/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC > SRR4302540.7312813/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC > SRR4302540.6522983/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC < SRR4302540.1250895/94‑1 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC > SRR4302540.1966107/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC > SRR4302540.3755079/1‑94 (MQ=60)
TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGCGGGCAGTGATCTCGCTGCCCC > SRR4302540.2314326/1‑94 (MQ=60)
TTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT < SRR4302540.968566/94‑1 (MQ=60)
TTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT > SRR4302540.8844006/1‑94 (MQ=60)
TTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT > SRR4302540.2088246/1‑94 (MQ=60)
TTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT > SRR4302540.7925320/1‑94 (MQ=60)
TGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGCCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTG < SRR4302540.7771863/94‑1 (MQ=60)
TGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTG > SRR4302540.1977857/1‑94 (MQ=60)
GTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGG > SRR4302540.1517117/1‑94 (MQ=60)
ATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTT > SRR4302540.5819349/1‑94 (MQ=60)
ATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTT > SRR4302540.1985507/1‑94 (MQ=60)
ATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTT > SRR4302540.5693214/1‑94 (MQ=60)
TAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCT > SRR4302540.7677400/1‑94 (MQ=60)
AGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTT < SRR4302540.3925275/94‑1 (MQ=60)
GCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTT > SRR4302540.3356736/1‑94 (MQ=60)
GCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTT > SRR4302540.1443417/1‑94 (MQ=60)
CAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTA > SRR4302540.9866707/1‑94 (MQ=60)
CAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTA < SRR4302540.5166253/94‑1 (MQ=60)
CAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTA > SRR4302540.9866706/1‑94 (MQ=60)
AGACGTCAAACTTTCATCGCTGACAGAACTCACTGCAAAAGACCTTCTCGGTTAATAACCGGGGGAAGCGATATCGCTGCCCCTGATTCTTTCT > SRR4302540.4066411/1‑94 (MQ=60)
AGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAT > SRR4302540.2905034/1‑94 (MQ=60)
GTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGA > SRR4302540.4409780/1‑94 (MQ=60)
GTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGA > SRR4302540.7578906/1‑94 (MQ=60)
TCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAA < SRR4302540.9590364/94‑1 (MQ=60)
TCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAA > SRR4302540.5198248/1‑94 (MQ=60)
TCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAA > SRR4302540.4355493/1‑94 (MQ=60)
TCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAA > SRR4302540.4355494/1‑94 (MQ=60)
CAAACTTTCATCGCTGATAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAA < SRR4302540.1539517/94‑1 (MQ=60)
CAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAA > SRR4302540.5824571/1‑94 (MQ=60)
AAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAT < SRR4302540.3779095/94‑1 (MQ=60)
AACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATT < SRR4302540.10063174/94‑1 (MQ=60)
ACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTG > SRR4302540.4682946/1‑94 (MQ=60)
ACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTG < SRR4302540.9241031/94‑1 (MQ=60)
TTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGACATTGCT > SRR4302540.1933808/1‑94 (MQ=60)
TTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGTA > SRR4302540.1933809/1‑94 (MQ=60)
TTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCA > SRR4302540.4603009/1‑94 (MQ=60)
TTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCA > SRR4302540.9484690/1‑94 (MQ=60)
TTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAT < SRR4302540.9748459/94‑1 (MQ=60)
TTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAT < SRR4302540.5922243/94‑1 (MQ=60)
TTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAT > SRR4302540.9788688/1‑94 (MQ=60)
TTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAT > SRR4302540.5555682/1‑94 (MQ=60)
TCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTTCCCCTGGTTCTTTATCTGAAATTGCATT < SRR4302540.5256456/94‑1 (MQ=60)
TCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATT > SRR4302540.3916185/1‑94 (MQ=60)
CATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTC > SRR4302540.3794267/1‑94 (MQ=60)
CATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTC < SRR4302540.8420342/94‑1 (MQ=60)
CATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTC > SRR4302540.7139322/1‑94 (MQ=60)
CATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGAGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTC < SRR4302540.6275395/94‑1 (MQ=60)
TCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAA < SRR4302540.2297041/94‑1 (MQ=60)
CGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAC > SRR4302540.5371443/1‑94 (MQ=60)
CGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAC < SRR4302540.8569109/94‑1 (MQ=60)
GCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACT < SRR4302540.8033280/94‑1 (MQ=60)
GCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACT < SRR4302540.7020851/94‑1 (MQ=60)
GCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACT > SRR4302540.2701627/1‑94 (MQ=60)
GCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACT < SRR4302540.2423343/94‑1 (MQ=60)
GCTGACAGAACTCACCGCAAAAGACCTTCTCGGTGAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACT < SRR4302540.9256160/94‑1 (MQ=60)
TGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGA > SRR4302540.8288470/1‑94 (MQ=60)
TGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGA < SRR4302540.8078216/94‑1 (MQ=60)
TGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGA < SRR4302540.9658291/94‑1 (MQ=60)
ACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACG > SRR4302540.1801760/1‑94 (MQ=60)
ACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACG > SRR4302540.8972125/1‑94 (MQ=60)
GAACTCCCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGAT < SRR4302540.3593152/94‑1 (MQ=60)
GAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGAT < SRR4302540.3735004/94‑1 (MQ=60)
ACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTA < SRR4302540.3294758/94‑1 (MQ=60)
CTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAA < SRR4302540.3234066/94‑1 (MQ=60)
CTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAA > SRR4302540.3612332/1‑94 (MQ=60)
TCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAT > SRR4302540.2586036/1‑94 (MQ=60)
TCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAT < SRR4302540.7622694/94‑1 (MQ=60)
TCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAT > SRR4302540.257065/1‑94 (MQ=60)
TCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAT > SRR4302540.2049755/1‑94 (MQ=60)
CACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATC > SRR4302540.6725583/1‑94 (MQ=60)
CACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATC < SRR4302540.3782692/94‑1 (MQ=60)
ACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGGGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTACTCG > SRR4302540.1104108/1‑94 (MQ=60)
CCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGT > SRR4302540.7215264/1‑94 (MQ=60)
CCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGT > SRR4302540.2928716/1‑94 (MQ=60)
CCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGT > SRR4302540.2928715/1‑94 (MQ=60)
CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC > SRR4302540.6593486/1‑94 (MQ=60)
CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC > SRR4302540.6593485/1‑94 (MQ=60)
CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC > SRR4302540.592498/1‑94 (MQ=60)
CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC > SRR4302540.9302289/1‑94 (MQ=60)
CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC > SRR4302540.9302290/1‑94 (MQ=60)
CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC > SRR4302540.4240262/1‑94 (MQ=60)
GCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCA < SRR4302540.5259287/94‑1 (MQ=60)
GCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCA > SRR4302540.6953777/1‑94 (MQ=60)
GCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCA > SRR4302540.4999874/1‑94 (MQ=60)
GCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCA < SRR4302540.5259285/94‑1 (MQ=60)
CAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAA < SRR4302540.5061955/94‑1 (MQ=60)
CAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAA < SRR4302540.6229075/94‑1 (MQ=60)
AAAAGACCTTCTTGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAT > SRR4302540.8162394/1‑94 (MQ=60)
AAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAT > SRR4302540.7669660/1‑94 (MQ=60)
AAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATT > SRR4302540.6879286/1‑94 (MQ=60)
AAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTT < SRR4302540.641226/94‑1 (MQ=60)
AGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTA < SRR4302540.4346947/94‑1 (MQ=60)
AGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTA < SRR4302540.6343595/94‑1 (MQ=60)
GCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAG < SRR4302540.2277694/94‑1 (MQ=60)
CTTCTCGGTTAATGACCGGGGGCAGTTATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAG < SRR4302540.7686640/94‑1 (MQ=60)
CTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAG < SRR4302540.7686334/94‑1 (MQ=60)
CTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAG > SRR4302540.4023734/1‑94 (MQ=60)
TCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAA < SRR4302540.5295048/94‑1 (MQ=60)
CTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAA > SRR4302540.7178895/1‑94 (MQ=60)
CTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAA < SRR4302540.4422042/94‑1 (MQ=60)
TCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAG < SRR4302540.9112875/94‑1 (MQ=60)
CGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGA < SRR4302540.787612/94‑1 (MQ=60)
GGTTAATGACCGGGGGCAGTGATCTCGCTGCTCATGGTTCTTTATCTGAAAGTGAATCACACTGCCGGATTAATCGTCAATTTAAGAGAAAGAG > SRR4302540.5915716/1‑94 (MQ=53)
GGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAG < SRR4302540.9896173/94‑1 (MQ=60)
GGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAG > SRR4302540.6320731/1‑94 (MQ=60)
GTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGT < SRR4302540.4930320/94‑1 (MQ=60)
GTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGT < SRR4302540.2303686/94‑1 (MQ=60)
TTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTT > SRR4302540.4426786/1‑94 (MQ=60)
TAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTA < SRR4302540.297935/94‑1 (MQ=60)
AATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTAC > SRR4302540.7292200/1‑94 (MQ=60)
TGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC < SRR4302540.4296724/94‑1 (MQ=60)
TGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC < SRR4302540.9728687/94‑1 (MQ=60)
TGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC < SRR4302540.2008760/94‑1 (MQ=60)
GACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACC < SRR4302540.6679939/94‑1 (MQ=60)
GACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACC < SRR4302540.4506663/94‑1 (MQ=60)
CCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGT > SRR4302540.3963477/1‑94 (MQ=60)
CGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTC < SRR4302540.6294885/94‑1 (MQ=60)
CGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTC > SRR4302540.35101/1‑94 (MQ=60)
CGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTC < SRR4302540.1580625/94‑1 (MQ=60)
CGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTC < SRR4302540.7942617/94‑1 (MQ=60)
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AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTC > NC_000913/1807985‑1808170
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Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |