Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,808,078 A→G intergenic (+6/‑157) yniC → / → b1728 putative phosphatase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,808,0780AG100.0% 808.8 / NA 250intergenic (+6/‑157)yniC/b1728putative phosphatase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (121/129);  total (121/129)

Only 100 of 257 total aligned reads displayed.

AGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC  >  NC_000913/1807988‑1808166
                                                                                          |                                                                                        
aGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCggg                                                                                        >  2:3195204/1‑93 (MQ=255)
aGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCggg                                                                                        >  1:1813051/1‑93 (MQ=255)
 gcgcAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCgggg                                                                                       >  1:455215/1‑93 (MQ=255)
   gcAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGc                                                                                     <  1:4540447/93‑1 (MQ=255)
     aaaaTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAg                                                                                   >  2:3794347/1‑93 (MQ=255)
     aaaaTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAg                                                                                   >  1:2104219/1‑93 (MQ=255)
      aaaTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGt                                                                                  <  2:970749/93‑1 (MQ=255)
       aaTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTg                                                                                 >  2:3993902/1‑93 (MQ=255)
        aTGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGa                                                                                >  1:3591436/1‑93 (MQ=255)
          gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc                                                                              <  2:4944572/93‑1 (MQ=255)
          gATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtc                                                                              >  1:4680140/1‑93 (MQ=255)
           aTCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtct                                                                             <  1:1786922/93‑1 (MQ=255)
           aTCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGAtct                                                                             >  1:5441760/1‑93 (MQ=255)
              cACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGc                                                                          <  2:5795740/93‑1 (MQ=255)
               aCGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCt                                                                         >  1:619908/1‑93 (MQ=255)
                 gTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGc                                                                       >  2:1334243/1‑93 (MQ=255)
                    ttGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGcccc                                                                    >  2:793621/1‑93 (MQ=255)
                     tGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGTCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCt                                                                   <  1:3062404/93‑1 (MQ=255)
                      gTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTg                                                                  >  2:4809949/1‑93 (MQ=255)
                      gTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTg                                                                  >  2:721322/1‑93 (MQ=255)
                      gTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTg                                                                  <  1:4284508/93‑1 (MQ=255)
                       tATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGTCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTgg                                                                 <  1:1104677/93‑1 (MQ=255)
                         ttAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGtt                                                               >  2:3156579/1‑93 (MQ=255)
                         ttAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGtt                                                               <  1:4925671/93‑1 (MQ=255)
                          tAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTc                                                              >  1:3810217/1‑93 (MQ=255)
                          tAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTc                                                              <  1:5157099/93‑1 (MQ=255)
                            gCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCtt                                                            >  2:2687356/1‑93 (MQ=255)
                            gCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCtt                                                            <  2:4425108/93‑1 (MQ=255)
                            gCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGCTCtt                                                            >  1:2209143/1‑93 (MQ=255)
                             cAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCttt                                                           <  2:1837594/93‑1 (MQ=255)
                             cAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCttt                                                           <  2:3651537/93‑1 (MQ=255)
                               gACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAt                                                         >  2:1061551/1‑93 (MQ=255)
                               gACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAt                                                         >  1:4193759/1‑93 (MQ=255)
                               gACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGCGATCTCGCTGCCCCTGGTTCTTTAt                                                         >  1:1510303/1‑93 (MQ=255)
                                aCGTCAAACTTTCATCGCTGACAGAACTCGCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATc                                                        >  1:99814/1‑93 (MQ=255)
                                aCGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATc                                                        <  1:3950442/93‑1 (MQ=255)
                                 cGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCt                                                       <  1:3438224/93‑1 (MQ=255)
                                     aagcTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa                                                   <  2:2730648/90‑1 (MQ=255)
                                     aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa                                                   <  1:2253170/93‑1 (MQ=255)
                                     aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa                                                   <  2:3475955/93‑1 (MQ=255)
                                     aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa                                                   >  1:5268268/1‑93 (MQ=255)
                                     aaaCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGaaa                                                   <  1:2961651/93‑1 (MQ=255)
                                       aCTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAtt                                                 <  1:1048359/93‑1 (MQ=255)
                                       aCTTTCATCGCAAACACAACTCACCGCAAAAGACCTTCTCGGTTAATGACGGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAtt                                                 <  2:5121203/93‑1 (MQ=255)
                                         tttCATCGCTGACAGAACTCGCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGc                                               >  2:6066250/1‑93 (MQ=255)
                                         tttCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGc                                               >  2:3280745/1‑93 (MQ=255)
                                         tttCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGc                                               >  2:6287680/1‑93 (MQ=255)
                                          ttgaTCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCa                                              <  2:2597713/90‑1 (MQ=255)
                                          ttCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCa                                              <  2:1516375/93‑1 (MQ=255)
                                           tCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCAt                                             >  2:2291937/1‑93 (MQ=255)
                                             aTCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTc                                           <  2:2481619/93‑1 (MQ=255)
                                              tCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCa                                          <  2:3950364/93‑1 (MQ=255)
                                              tCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCa                                          <  2:1987435/93‑1 (MQ=255)
                                              tCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCa                                          <  2:1846711/93‑1 (MQ=255)
                                              tCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGGTAATGACCGGGGGCAGTGATCTTGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCa                                          >  1:5398793/1‑93 (MQ=255)
                                                gCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAc                                        >  1:827990/1‑93 (MQ=255)
                                                 cTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACt                                       <  1:3314934/93‑1 (MQ=255)
                                                 cTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACt                                       <  1:337297/93‑1 (MQ=255)
                                                   gACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACtca                                     >  2:5004467/1‑91 (MQ=255)
                                                    aCAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGAc                                    <  1:6010906/93‑1 (MQ=255)
                                                    aCAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGAc                                    >  1:3776470/1‑93 (MQ=255)
                                                    aCAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGAc                                    <  2:3433891/93‑1 (MQ=255)
                                                     cAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACg                                   <  1:4214269/93‑1 (MQ=255)
                                                      aGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACgg                                  <  2:4247721/93‑1 (MQ=255)
                                                        aaCTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGAt                                <  1:5925798/93‑1 (MQ=255)
                                                         aCTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGAtt                               >  2:4310725/1‑93 (MQ=255)
                                                          cTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTa                              <  2:5643265/93‑1 (MQ=255)
                                                            cACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAt                            <  2:6165972/93‑1 (MQ=255)
                                                            cACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAt                            >  1:4381331/1‑93 (MQ=255)
                                                            cACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAt                            <  2:2399889/93‑1 (MQ=255)
                                                             aCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATc                           >  2:6061987/1‑93 (MQ=255)
                                                             aCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATc                           >  1:2870403/1‑93 (MQ=255)
                                                                gCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTc                        >  2:6022453/1‑93 (MQ=255)
                                                                 cAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCa                       <  2:1722549/93‑1 (MQ=255)
                                                                   aaaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAt                     >  1:1332165/1‑93 (MQ=255)
                                                                   aaaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAt                     >  1:5106679/1‑93 (MQ=255)
                                                                    aaGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAtt                    >  1:6297038/1‑93 (MQ=255)
                                                                      gACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTa                  <  2:3835097/93‑1 (MQ=255)
                                                                       aCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTaa                 <  1:4848521/93‑1 (MQ=255)
                                                                        ccTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAag                >  2:5430272/1‑93 (MQ=255)
                                                                        ccTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAag                <  2:5082659/93‑1 (MQ=255)
                                                                         cTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAaga               >  1:6155745/1‑93 (MQ=255)
                                                                          ttCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAagag              >  1:3448008/1‑93 (MQ=255)
                                                                           tctcGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAgaga             >  1:4073500/1‑93 (MQ=255)
                                                                             tcGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGaaa           <  1:2803142/93‑1 (MQ=255)
                                                                             tcGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGaaa           <  2:2225774/93‑1 (MQ=255)
                                                                              cGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAag          >  1:4560753/1‑93 (MQ=255)
                                                                               ggTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAaga         >  1:4990521/1‑93 (MQ=255)
                                                                               ggTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAaga         <  2:4467798/93‑1 (MQ=255)
                                                                                gTTAATGACCGGGGGCAGTGATCTCGCAGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAagag        >  1:2423615/1‑93 (MQ=255)
                                                                                 ttAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGt       >  1:2568615/1‑93 (MQ=255)
                                                                                 ttAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGt       <  1:1276392/93‑1 (MQ=255)
                                                                                 gtAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGt       <  1:1240955/92‑1 (MQ=255)
                                                                                  tAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGtt      <  2:5471781/93‑1 (MQ=255)
                                                                                   aaTGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTa     <  1:5625089/93‑1 (MQ=255)
                                                                                    aTGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTac    >  2:3585920/1‑93 (MQ=255)
                                                                                     tGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTaca   >  2:3291359/1‑93 (MQ=255)
                                                                                     tGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTaca   >  2:214419/1‑93 (MQ=255)
                                                                                      gACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTacac  <  1:5779066/93‑1 (MQ=255)
                                                                                      gACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTacac  >  1:3111120/1‑93 (MQ=255)
                                                                                          |                                                                                        
AGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC  >  NC_000913/1807988‑1808166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCA  >  NC_000913/1807985‑1808171
                                                                                             |                                                                                             
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCG                                                                                               <  SRR4302533.4744930/94‑1 (MQ=60)
  AAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGG                                                                                             >  SRR4302533.1824123/1‑94 (MQ=60)
   AGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGG                                                                                            >  SRR4302533.457936/1‑94 (MQ=60)
    GCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGG                                                                                           <  SRR4302533.6145883/94‑1 (MQ=60)
      GCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCA                                                                                         <  SRR4302533.4567939/94‑1 (MQ=60)
       CAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAG                                                                                        >  SRR4302533.2117191/1‑94 (MQ=60)
       CAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAG                                                                                        >  SRR4302533.2339473/1‑94 (MQ=60)
       CAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAG                                                                                        <  SRR4302533.3374437/94‑1 (MQ=60)
        AAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGT                                                                                       <  SRR4302533.5052620/94‑1 (MQ=60)
        AAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGT                                                                                       <  SRR4302533.4197356/94‑1 (MQ=60)
          AATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGA                                                                                     >  SRR4302533.3613543/1‑94 (MQ=60)
          AATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGA                                                                                     >  SRR4302533.2843132/1‑94 (MQ=60)
            TGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATC                                                                                   >  SRR4302533.5891975/1‑94 (MQ=60)
            TGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATC                                                                                   >  SRR4302533.4708502/1‑94 (MQ=60)
             GATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCT                                                                                  >  SRR4302533.5474536/1‑94 (MQ=60)
              ATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTC                                                                                 <  SRR4302533.361549/94‑1 (MQ=60)
              ATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTC                                                                                 <  SRR4302533.1797783/94‑1 (MQ=60)
              ATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTCATCTT                                                                                 >  SRR4302533.4325109/1‑94 (MQ=60)
               TCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCG                                                                                >  SRR4302533.1125962/1‑94 (MQ=60)
                CCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGC                                                                               >  SRR4302533.3471237/1‑94 (MQ=60)
                 CACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCT                                                                              <  SRR4302533.1270184/94‑1 (MQ=60)
                 CACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCT                                                                              <  SRR4302533.41257/94‑1 (MQ=60)
                 CACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCT                                                                              >  SRR4302533.623548/1‑94 (MQ=60)
                  ACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTG                                                                             <  SRR4302533.4462855/94‑1 (MQ=60)
                  ACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTG                                                                             >  SRR4302533.5162788/1‑94 (MQ=60)
                   CGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGC                                                                            >  SRR4302533.1120496/1‑94 (MQ=60)
                   CGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGGTAATGACCGGGGGCAGTGATCTCGCTGC                                                                            >  SRR4302533.226589/1‑94 (MQ=60)
                    GTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCC                                                                           <  SRR4302533.1340583/94‑1 (MQ=60)
                     TTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCC                                                                          <  SRR4302533.4967436/94‑1 (MQ=60)
                      TTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCC                                                                         <  SRR4302533.3003761/94‑1 (MQ=60)
                       TTGTATTAGCAGATGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT                                                                        >  SRR4302533.5155514/1‑94 (MQ=60)
                       TTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT                                                                        <  SRR4302533.3446260/94‑1 (MQ=60)
                       TTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCT                                                                        <  SRR4302533.1804796/94‑1 (MQ=60)
                        TGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCGCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTG                                                                       >  SRR4302533.4578429/1‑94 (MQ=60)
                        TGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGTCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTG                                                                       <  SRR4302533.3081204/94‑1 (MQ=60)
                        TGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTG                                                                       >  SRR4302533.3169604/1‑94 (MQ=60)
                        TGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTG                                                                       <  SRR4302533.1003650/94‑1 (MQ=60)
                         GTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGG                                                                      >  SRR4302533.398357/1‑94 (MQ=60)
                         GTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGG                                                                      <  SRR4302533.4587166/94‑1 (MQ=60)
                         GTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGG                                                                      <  SRR4302533.4310255/94‑1 (MQ=60)
                          TATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGTCCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGT                                                                     <  SRR4302533.1111221/94‑1 (MQ=60)
                           ATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTT                                                                    <  SRR4302533.5425970/94‑1 (MQ=60)
                           ATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTT                                                                    <  SRR4302533.4297133/94‑1 (MQ=60)
                            TTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTC                                                                   <  SRR4302533.4955504/94‑1 (MQ=60)
                            TTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTC                                                                   >  SRR4302533.3833522/1‑94 (MQ=60)
                             TAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCT                                                                  <  SRR4302533.5188234/94‑1 (MQ=60)
                             TAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCT                                                                  <  SRR4302533.5212294/94‑1 (MQ=60)
                              AGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGCTCTT                                                                 >  SRR4302533.2222768/1‑94 (MQ=60)
                                CAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGCTCTCGCTGCCCCTGGTTCTTTA                                                               >  SRR4302533.6262964/1‑94 (MQ=60)
                                CAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTA                                                               <  SRR4302533.2012712/94‑1 (MQ=60)
                                CAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTA                                                               <  SRR4302533.6205223/94‑1 (MQ=60)
                                 AGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAT                                                              <  SRR4302533.1714186/94‑1 (MQ=60)
                                 AGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAT                                                              >  SRR4302533.4219139/1‑94 (MQ=60)
                                 AGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTAT                                                              <  SRR4302533.2909525/94‑1 (MQ=60)
                                 AGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGCGATCTCGCTGCCCCTGGTTCTTTAT                                                              >  SRR4302533.1519406/1‑94 (MQ=60)
                                  GACGTCAAACTTTCATCGCTGACAGAACTCGCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATC                                                             >  SRR4302533.100433/1‑94 (MQ=60)
                                   ACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCT                                                            <  SRR4302533.3974527/94‑1 (MQ=60)
                                    CGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTG                                                           <  SRR4302533.3459457/94‑1 (MQ=60)
                                     GTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGA                                                          >  SRR4302533.4567990/1‑94 (MQ=60)
                                       CAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAA                                                        >  SRR4302533.3500811/1‑94 (MQ=60)
                                       CAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAA                                                        >  SRR4302533.5299871/1‑94 (MQ=60)
                                        AAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAT                                                       >  SRR4302533.3464543/1‑94 (MQ=60)
                                        AAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAT                                                       <  SRR4302533.2979754/94‑1 (MQ=60)
                                        AAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAAT                                                       <  SRR4302533.2267104/94‑1 (MQ=60)
                                         AACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATT                                                      >  SRR4302533.766858/1‑94 (MQ=60)
                                          ACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTG                                                     <  SRR4302533.1054520/94‑1 (MQ=60)
                                          ACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTG                                                     >  SRR4302533.309243/1‑94 (MQ=60)
                                           CTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGC                                                    >  SRR4302533.2169004/1‑94 (MQ=60)
                                           CTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGC                                                    >  SRR4302533.2045145/1‑94 (MQ=60)
                                           CTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGC                                                    <  SRR4302533.1594345/94‑1 (MQ=60)
                                           CTTGCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGC                                                    <  SRR4302533.2290255/94‑1 (MQ=60)
                                            TTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCA                                                   <  SRR4302533.5616545/94‑1 (MQ=60)
                                               CATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTC                                                >  SRR4302533.6046438/1‑94 (MQ=60)
                                                ATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCA                                               <  SRR4302533.927725/94‑1 (MQ=60)
                                                ATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCA                                               <  SRR4302533.2560638/94‑1 (MQ=60)
                                                ATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCA                                               >  SRR4302533.130430/1‑94 (MQ=60)
                                                ATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGGTAATGACCGGGGGCAGTGATCTTGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCA                                               >  SRR4302533.5431236/1‑94 (MQ=60)
                                                 TCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAA                                              <  SRR4302533.4640304/94‑1 (MQ=60)
                                                  CGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAAC                                             >  SRR4302533.832846/1‑94 (MQ=60)
                                                   GCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACT                                            <  SRR4302533.4924794/94‑1 (MQ=60)
                                                    CTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTG                                           <  SRR4302533.339357/94‑1 (MQ=60)
                                                    CTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTG                                           <  SRR4302533.3335399/94‑1 (MQ=60)
                                                    CTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTG                                           <  SRR4302533.5742642/94‑1 (MQ=60)
                                                      GACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGAC                                         >  SRR4302533.3799616/1‑94 (MQ=60)
                                                      GACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGAC                                         >  SRR4302533.4288900/1‑94 (MQ=60)
                                                       ACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACG                                        <  SRR4302533.6047322/94‑1 (MQ=60)
                                                        CAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGG                                       <  SRR4302533.4239764/94‑1 (MQ=60)
                                                         AGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGA                                      <  SRR4302533.76517/94‑1 (MQ=60)
                                                         AGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGA                                      <  SRR4302533.6027543/94‑1 (MQ=60)
                                                           AANCNANCNCAAAAGACCTTCTNGGTTAATGACCGGGGGNAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATT                                    <  SRR4302533.1304347/94‑1 (MQ=60)
                                                           AACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATT                                    <  SRR4302533.4974452/94‑1 (MQ=60)
                                                           AACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATT                                    <  SRR4302533.5961620/94‑1 (MQ=60)
                                                           AACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATT                                    >  SRR4302533.1074781/1‑94 (MQ=60)
                                                            ACTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTA                                   <  SRR4302533.5317025/94‑1 (MQ=60)
                                                             CTCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAA                                  <  SRR4302533.5771599/94‑1 (MQ=60)
                                                              TCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAT                                 <  SRR4302533.5543885/94‑1 (MQ=60)
                                                              TCACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAAT                                 >  SRR4302533.4407785/1‑94 (MQ=60)
                                                               CACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGTATTCAACTGACGGATTAATC                                >  SRR4302533.2771600/1‑94 (MQ=60)
                                                               CACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATC                                >  SRR4302533.2888064/1‑94 (MQ=60)
                                                                CCCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCG                               <  SRR4302533.3810192/94‑1 (MQ=60)
                                                                ACCGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCG                               <  SRR4302533.4874549/94‑1 (MQ=60)
                                                                  CGCAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTC                             <  SRR4302533.1307607/94‑1 (MQ=60)
                                                                    CAAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAA                           <  SRR4302533.3837533/94‑1 (MQ=60)
                                                                     AAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAT                          >  SRR4302533.5137534/1‑94 (MQ=60)
                                                                     AAAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAAT                          >  SRR4302533.1340159/1‑94 (MQ=60)
                                                                      AAAGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATT                         >  SRR4302533.6334615/1‑94 (MQ=60)
                                                                        AGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTA                       <  SRR4302533.5459685/94‑1 (MQ=60)
                                                                        AGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTA                       >  SRR4302533.2626670/1‑94 (MQ=60)
                                                                        AGACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTA                       >  SRR4302533.4366280/1‑94 (MQ=60)
                                                                          ACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAG                     <  SRR4302533.4877903/94‑1 (MQ=60)
                                                                          ACCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTCATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAG                     <  SRR4302533.3404922/94‑1 (MQ=60)
                                                                           CCTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGA                    >  SRR4302533.6192778/1‑94 (MQ=60)
                                                                            CTTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAG                   >  SRR4302533.3469299/1‑94 (MQ=60)
                                                                             TTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGA                  >  SRR4302533.3712111/1‑94 (MQ=60)
                                                                             TTCTCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGA                  >  SRR4302533.4098299/1‑94 (MQ=60)
                                                                                TCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAG               >  SRR4302533.4588415/1‑94 (MQ=60)
                                                                                TCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAG               <  SRR4302533.2820393/94‑1 (MQ=60)
                                                                                CCGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAG               <  SRR4302533.4894868/94‑1 (MQ=60)
                                                                                 CGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGA              >  SRR4302533.3867265/1‑94 (MQ=60)
                                                                                 CGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGA              >  SRR4302533.5020776/1‑94 (MQ=60)
                                                                                 CGGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGA              <  SRR4302533.3261930/94‑1 (MQ=60)
                                                                                  GGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAG             <  SRR4302533.2191710/94‑1 (MQ=60)
                                                                                  GGTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAG             >  SRR4302533.6210131/1‑94 (MQ=60)
                                                                                  GGTTAATGACCGGGGGCAGTGATCTCGCAGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAG             >  SRR4302533.2438575/1‑94 (MQ=60)
                                                                                   GTTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGT            >  SRR4302533.2584420/1‑94 (MQ=60)
                                                                                    TTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTT           <  SRR4302533.1284064/94‑1 (MQ=60)
                                                                                    GTAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTT           <  SRR4302533.1248369/94‑1 (MQ=60)
                                                                                     TAATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTA          >  SRR4302533.4633141/1‑94 (MQ=60)
                                                                                      AATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTAC         <  SRR4302533.5659087/94‑1 (MQ=60)
                                                                                       ATGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACA        >  SRR4302533.2984972/1‑94 (MQ=60)
                                                                                        TGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC       >  SRR4302533.3130245/1‑94 (MQ=60)
                                                                                        TGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC       <  SRR4302533.2947036/94‑1 (MQ=60)
                                                                                        TGACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACAC       >  SRR4302533.4228201/1‑94 (MQ=60)
                                                                                         GACCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACC      <  SRR4302533.5813971/94‑1 (MQ=60)
                                                                                           CCGGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGC    >  SRR4302533.1111425/1‑94 (MQ=60)
                                                                                             GGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCA  <  SRR4302533.233473/94‑1 (MQ=60)
                                                                                             GGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCA  >  SRR4302533.6263478/1‑94 (MQ=60)
                                                                                             GGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCA  >  SRR4302533.3416351/1‑94 (MQ=60)
                                                                                             |                                                                                             
AGAAGCGCAAAATGATCCACGTTTTGTATTAGCAGACGTCAAACTTTCATCGCTGACAGAACTCACCGCAAAAGACCTTCTCGGTTAATGACCAGGGGCAGTGATCTCGCTGCCCCTGGTTCTTTATCTGAAATTGCATTCAACTGACGGATTAATCGTCAATTTAAGAGAAAGAGTTACACCGTCA  >  NC_000913/1807985‑1808171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑