Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,812,482	T→C	F198L (TTC→CTC)	katE →	catalase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,812,482	0	T	C	100.0%	924.5 / NA	286	F198L (TTC→CTC)	katE	catalase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (121/165); total (121/165)

Only 100 of 293 total aligned reads displayed.

ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG  >  NC_000913/1812392‑1812571

aCCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTc                                                                                         >  2:7197545/1‑93 (MQ=255)

  cGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGt                                                                                       <  1:9286438/93‑1 (MQ=255)

  cGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGt                                                                                       <  1:6134415/93‑1 (MQ=255)

   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  1:7300517/93‑1 (MQ=255)

   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  2:5225108/93‑1 (MQ=255)

   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  1:5514983/93‑1 (MQ=255)

   gTTCAGGGGGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  1:3929322/93‑1 (MQ=255)

    ttCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTg                                                                                     <  2:4149194/93‑1 (MQ=255)

       aGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCa                                                                                  <  1:4256564/93‑1 (MQ=255)

          gtggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATa                                                                               >  1:626130/1‑93 (MQ=255)

          gtggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATa                                                                               <  2:8388977/93‑1 (MQ=255)

            ggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAac                                                                             >  2:701215/1‑93 (MQ=255)

            ggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTAGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAac                                                                             <  1:10024820/93‑1 (MQ=255)

             gtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAaca                                                                            <  2:8792487/93‑1 (MQ=255)

              tgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAacac                                                                           <  2:1560851/93‑1 (MQ=255)

                 tGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGcc                                                                        <  2:10026511/93‑1 (MQ=255)

                 tGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGAATTTTTGACCTCGTTGGCAATAACACGcc                                                                        >  2:1284142/1‑93 (MQ=255)

                  ggCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCa                                                                       <  2:4552180/93‑1 (MQ=255)

                   gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa                                                                      <  1:8867055/93‑1 (MQ=255)

                   gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa                                                                      >  2:8510155/1‑93 (MQ=255)

                     tctGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtc                                                                    >  2:356118/1‑93 (MQ=255)

                     tctGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtc                                                                    <  1:4018195/93‑1 (MQ=255)

                       tgctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtctt                                                                  >  2:805615/1‑93 (MQ=255)

                       tgctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtctt                                                                  >  1:5617956/1‑93 (MQ=255)

                        gctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc                                                                 >  2:6301336/1‑93 (MQ=255)

                        gctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc                                                                 <  2:4011715/93‑1 (MQ=255)

                         ctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttct                                                                <  2:3650199/93‑1 (MQ=255)

                         ctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttct                                                                >  2:1885429/1‑93 (MQ=255)

                          tgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATcttctt                                                               >  1:8009937/1‑93 (MQ=255)

                          tgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATcttctt                                                               <  1:4807444/93‑1 (MQ=255)

                          tgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATcttatt                                                               >  2:2759077/1‑93 (MQ=255)

                           gATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCttt                                                              >  1:1483070/1‑93 (MQ=255)

                            aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa                                                             <  1:9000914/93‑1 (MQ=255)

                            aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa                                                             <  1:1139553/93‑1 (MQ=255)

                             tACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAt                                                            >  1:22524/1‑93 (MQ=255)

                               ccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATcc                                                          <  2:7452822/93‑1 (MQ=255)

                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa                                                         <  2:7627413/93‑1 (MQ=255)

                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa                                                         >  1:9696626/1‑93 (MQ=255)

                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa                                                         <  2:93352/93‑1 (MQ=255)

                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa                                                         >  1:3299687/1‑93 (MQ=255)

                                 gtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAg                                                        <  1:7812360/93‑1 (MQ=255)

                                  tgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAgg                                                       >  2:3167244/1‑93 (MQ=255)

                                   gcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGa                                                      <  2:8280052/93‑1 (MQ=255)

                                    cgtgATATCCGAGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGAt                                                     <  1:4834651/93‑1 (MQ=255)

                                     gtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATg                                                    <  1:6591122/93‑1 (MQ=255)

                                       gATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGTCACTAACACTCCAATCTTCTTTATCCAGGATgcg                                                  >  2:5125608/1‑93 (MQ=255)

                                          atCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCAt                                               <  2:5884803/93‑1 (MQ=255)

                                           tCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATa                                              >  1:7504188/1‑93 (MQ=255)

                                             cGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaaa                                            <  2:3149287/93‑1 (MQ=255)

                                              gTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAt                                           <  1:1010768/93‑1 (MQ=255)

                                               tGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAtt                                          >  1:7606702/1‑93 (MQ=255)

                                               tGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAtt                                          >  2:4848375/1‑93 (MQ=255)

                                               tGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCCTCTTTATCCAGGATGCGCATCAAtt                                          >  1:6552437/1‑93 (MQ=255)

                                                ggCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTc                                         <  2:5066142/93‑1 (MQ=255)

                                                 gCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTcc                                        >  2:9877577/1‑93 (MQ=255)

                                                  cTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTccc                                       <  2:2080081/93‑1 (MQ=255)

                                                   tttGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTcccc                                      <  1:1927787/93‑1 (MQ=255)

                                                     tGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATGACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGa                                    <  1:1753194/93‑1 (MQ=255)

                                                     tGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGa                                    <  2:8995034/93‑1 (MQ=255)

                                                     tGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGa                                    >  2:1168852/1‑93 (MQ=255)

                                                     tGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGa                                    <  1:875669/93‑1 (MQ=255)

                                                      gCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAACTTcccgaat                                   >  1:4622446/1‑89 (MQ=255)

                                                       ccaccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtt                                  <  1:8462959/93‑1 (MQ=255)

                                                       ccaccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtt                                  <  2:7496712/93‑1 (MQ=255)

                                                        caccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAttt                                 <  1:3773945/93‑1 (MQ=255)

                                                         accaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtttt                                >  2:3305263/1‑93 (MQ=255)

                                                         accaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtttt                                <  1:577551/93‑1 (MQ=255)

                                                          ccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTg                               >  1:7915038/1‑93 (MQ=255)

                                                          ccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTg                               >  1:5971179/1‑93 (MQ=255)

                                                             aGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTc                            >  2:7175760/1‑93 (MQ=255)

                                                             aGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTc                            >  2:6460153/1‑93 (MQ=255)

                                                             aGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTc                            >  1:6881327/1‑93 (MQ=255)

                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  1:1710880/93‑1 (MQ=255)

                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  1:2453954/93‑1 (MQ=255)

                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           >  1:5010103/1‑93 (MQ=255)

                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  2:3452891/93‑1 (MQ=255)

                                                              gTTCGATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  1:2958821/93‑1 (MQ=255)

                                                               ttCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAt                          >  2:3795309/1‑93 (MQ=255)

                                                               ttCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAt                          >  1:8155800/1‑93 (MQ=255)

                                                               ttCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAt                          <  1:506799/93‑1 (MQ=255)

                                                                tCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATg                         >  2:7955015/1‑93 (MQ=255)

                                                                 cTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGc                        <  1:7264463/93‑1 (MQ=255)

                                                                  tataCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCg                       >  1:6239454/1‑93 (MQ=255)

                                                                   ataCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCgg                      >  2:136412/1‑93 (MQ=255)

                                                                      ccGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaa                   <  2:4506053/93‑1 (MQ=255)

                                                                       cGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaaa                  <  2:292248/93‑1 (MQ=255)

                                                                        gAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaaaa                 >  1:6124444/1‑93 (MQ=255)

                                                                         aaGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAc                <  2:1466733/93‑1 (MQ=255)

                                                                          agagGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAca               >  2:5568981/1‑92 (MQ=255)

                                                                           gagGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCa              <  1:7731129/93‑1 (MQ=255)

                                                                             gggTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGa            >  2:5770198/1‑93 (MQ=255)

                                                                                 aTTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCg        >  2:2509990/1‑93 (MQ=255)

                                                                                  tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc       >  1:3019336/1‑93 (MQ=255)

                                                                                  tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc       <  2:4785753/93‑1 (MQ=255)

                                                                                  tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc       <  2:4366038/93‑1 (MQ=255)

                                                                                   ttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCa      >  1:2006089/1‑93 (MQ=255)

                                                                                      tGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTACAACCAGAACCGCACTg   <  2:9559024/93‑1 (MQ=255)

                                                                                       gACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTgg  >  1:8329655/1‑93 (MQ=255)

                                                                                       gACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTgg  <  2:2268885/93‑1 (MQ=255)

                                                                                       gACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTgg  <  2:6827219/93‑1 (MQ=255)

ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG  >  NC_000913/1812392‑1812571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCA  >  NC_000913/1812389‑1812574

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATGTCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                              <  SRR4302540.1355523/94‑1 (MQ=60)

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                              <  SRR4302540.6283415/94‑1 (MQ=60)

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                              <  SRR4302540.3323736/94‑1 (MQ=60)

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                              <  SRR4302540.8711193/94‑1 (MQ=60)

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                              <  SRR4302540.8711192/94‑1 (MQ=60)

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                              <  SRR4302540.1355522/94‑1 (MQ=60)

 CTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCT                                                                                             >  SRR4302540.742039/1‑94 (MQ=60)

 CTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCT                                                                                             >  SRR4302540.10072925/1‑94 (MQ=60)

   TCCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCG                                                                                           <  SRR4302540.5097020/94‑1 (MQ=60)

    CCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGT                                                                                          <  SRR4302540.454258/94‑1 (MQ=60)

    CCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGCATTTTTGACCTCGT                                                                                          >  SRR4302540.6310879/1‑94 (MQ=60)

     CGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTT                                                                                         <  SRR4302540.6202741/94‑1 (MQ=60)

     CGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTT                                                                                         <  SRR4302540.6202740/94‑1 (MQ=60)

     CGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTT                                                                                         <  SRR4302540.858785/94‑1 (MQ=60)

     CGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTT                                                                                         <  SRR4302540.9397411/94‑1 (MQ=60)

      GTTCAGGTTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                        <  SRR4302540.5575729/94‑1 (MQ=60)

      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                        <  SRR4302540.5575728/94‑1 (MQ=60)

      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                        >  SRR4302540.1819328/1‑94 (MQ=60)

      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                        <  SRR4302540.7382004/94‑1 (MQ=60)

      GTTCAGGGGGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                        <  SRR4302540.3971818/94‑1 (MQ=60)

        TCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGC                                                                                      <  SRR4302540.2355115/94‑1 (MQ=60)

        TCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGC                                                                                      >  SRR4302540.794368/1‑94 (MQ=60)

        TCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGC                                                                                      <  SRR4302540.3966609/94‑1 (MQ=60)

         CAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCA                                                                                     >  SRR4302540.3070036/1‑94 (MQ=60)

          AGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAA                                                                                    <  SRR4302540.4302873/94‑1 (MQ=60)

            GGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATA                                                                                  >  SRR4302540.632795/1‑94 (MQ=60)

             GTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAA                                                                                 >  SRR4302540.6796035/1‑94 (MQ=60)

             GTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAA                                                                                 >  SRR4302540.6785661/1‑94 (MQ=60)

             GTCGTGCTCGCTCTGCTGATACCGTGCGTGATCTCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAA                                                                                 <  SRR4302540.3628408/94‑1 (MQ=60)

               GGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACA                                                                               >  SRR4302540.8353465/1‑94 (MQ=60)

               GGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTAGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACA                                                                               <  SRR4302540.10141469/94‑1 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              >  SRR4302540.616247/1‑94 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              >  SRR4302540.1069750/1‑94 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              <  SRR4302540.4862226/94‑1 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              <  SRR4302540.4862227/94‑1 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              <  SRR4302540.8315238/94‑1 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              <  SRR4302540.7942985/94‑1 (MQ=60)

                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                              >  SRR4302540.662699/1‑94 (MQ=60)

                 TGCTGTCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACG                                                                             <  SRR4302540.7820385/94‑1 (MQ=60)

                 TGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACG                                                                             <  SRR4302540.7820384/94‑1 (MQ=60)

                    TGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCA                                                                          >  SRR4302540.4623898/1‑94 (MQ=60)

                     GGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAA                                                                         >  SRR4302540.1570624/1‑94 (MQ=60)

                      GCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAT                                                                        <  SRR4302540.3201499/94‑1 (MQ=60)

                      GCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAT                                                                        <  SRR4302540.8944013/94‑1 (MQ=60)

                      GCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAT                                                                        <  SRR4302540.8969660/94‑1 (MQ=60)

                        TCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCT                                                                      <  SRR4302540.4061482/94‑1 (MQ=60)

                         CTGCTGATACCGTGCGTGATGTCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                     >  SRR4302540.7090070/1‑94 (MQ=60)

                         CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                     >  SRR4302540.5679775/1‑94 (MQ=60)

                         CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                     >  SRR4302540.9633183/1‑94 (MQ=60)

                         CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                     >  SRR4302540.5961180/1‑94 (MQ=60)

                         CTGCGGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                     <  SRR4302540.8200704/94‑1 (MQ=60)

                           GCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCT                                                                   <  SRR4302540.9820851/94‑1 (MQ=60)

                            CTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTT                                                                  >  SRR4302540.9932852/1‑94 (MQ=60)

                            CTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTT                                                                  >  SRR4302540.8103125/1‑94 (MQ=60)

                             TGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTT                                                                 >  SRR4302540.1499347/1‑94 (MQ=60)

                             TGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTT                                                                 <  SRR4302540.1403798/94‑1 (MQ=60)

                             TGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTT                                                                 <  SRR4302540.4858898/94‑1 (MQ=60)

                             TGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTT                                                                 <  SRR4302540.1739489/94‑1 (MQ=60)

                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                               <  SRR4302540.1151474/94‑1 (MQ=60)

                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                               >  SRR4302540.22775/1‑94 (MQ=60)

                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                               <  SRR4302540.9108903/94‑1 (MQ=60)

                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                               <  SRR4302540.8232657/94‑1 (MQ=60)

                                TACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATC                                                              <  SRR4302540.4918120/94‑1 (MQ=60)

                                TACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATC                                                              <  SRR4302540.7380984/94‑1 (MQ=60)

                                 ACCGTGCGTGATATCCGTGGCTTTGCCTCCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCC                                                             <  SRR4302540.1748261/94‑1 (MQ=60)

                                 ACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCC                                                             <  SRR4302540.9067341/94‑1 (MQ=60)

                                 ACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCC                                                             <  SRR4302540.3840591/94‑1 (MQ=60)

                                  CCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCA                                                            >  SRR4302540.3335804/1‑94 (MQ=60)

                                  CCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCA                                                            >  SRR4302540.9810641/1‑94 (MQ=60)

                                   CGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAG                                                           >  SRR4302540.8018833/1‑94 (MQ=60)

                                    GTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGG                                                          <  SRR4302540.7903657/94‑1 (MQ=60)

                                       CGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATG                                                       <  SRR4302540.861272/94‑1 (MQ=60)

                                       CGTGATATCCGAGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATG                                                       <  SRR4302540.4886445/94‑1 (MQ=60)

                                        GTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGC                                                      <  SRR4302540.6664121/94‑1 (MQ=60)

                                        GTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGC                                                      >  SRR4302540.1885569/1‑94 (MQ=60)

                                         TGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCG                                                     <  SRR4302540.6265767/94‑1 (MQ=60)

                                         TGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCG                                                     >  SRR4302540.2747047/1‑94 (MQ=60)

                                          GATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGC                                                    >  SRR4302540.4735272/1‑94 (MQ=60)

                                            TACCCGTGGCTTTCCCACCAAGTTCTATACGGAGGAGGGTATTTTGGACTTCGTT‑GCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATA                                                 <  SRR4302540.9048008/94‑1 (MQ=60)

                                             ATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATA                                                 >  SRR4302540.2022005/1‑94 (MQ=60)

                                             ATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATA                                                 >  SRR4302540.7588055/1‑94 (MQ=60)

                                             ATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATA                                                 >  SRR4302540.540702/1‑94 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                             >  SRR4302540.6625108/1‑94 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                             >  SRR4302540.7671659/1‑94 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                             >  SRR4302540.7692180/1‑94 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                             >  SRR4302540.4293756/1‑94 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                             <  SRR4302540.6200493/94‑1 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                             >  SRR4302540.9678623/1‑94 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATA                                             <  SRR4302540.1021017/94‑1 (MQ=60)

                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCCTCTTTATCCAGGATGCGCATCAATT                                             >  SRR4302540.6625107/1‑94 (MQ=60)

                                                  TGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTC                                            >  SRR4302540.5536011/1‑94 (MQ=60)

                                                   GGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCC                                           <  SRR4302540.5008373/94‑1 (MQ=60)

                                                     CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC                                         <  SRR4302540.7502278/94‑1 (MQ=60)

                                                     CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC                                         >  SRR4302540.5976706/1‑94 (MQ=60)

                                                     CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC                                         <  SRR4302540.7371262/94‑1 (MQ=60)

                                                      TTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCG                                        <  SRR4302540.1948802/94‑1 (MQ=60)

                                                        TGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATGACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAT                                      <  SRR4302540.1772190/94‑1 (MQ=60)

                                                        TGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAACTTCCCgaat                                      >  SRR4302540.4671990/1‑90 (MQ=60)

                                                        TGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAT                                      <  SRR4302540.884964/94‑1 (MQ=60)

                                                          CCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTT                                    <  SRR4302540.8561228/94‑1 (MQ=60)

                                                           CACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTT                                   <  SRR4302540.3815124/94‑1 (MQ=60)

                                                            CCCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTG                                  <  SRR4302540.210779/94‑1 (MQ=60)

                                                            ACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTG                                  <  SRR4302540.583808/94‑1 (MQ=60)

                                                            ACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTG                                  >  SRR4302540.5107886/1‑94 (MQ=60)

                                                            ACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTG                                  >  SRR4302540.6037268/1‑94 (MQ=60)

                                                            ACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTG                                  >  SRR4302540.8007312/1‑94 (MQ=60)

                                                               AAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTC                               >  SRR4302540.6957608/1‑94 (MQ=60)

                                                               AAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTC                               >  SRR4302540.9123591/1‑94 (MQ=60)

                                                                AGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCA                              >  SRR4302540.5064355/1‑94 (MQ=60)

                                                                AGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCA                              <  SRR4302540.5671523/94‑1 (MQ=60)

                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             <  SRR4302540.2480368/94‑1 (MQ=60)

                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             >  SRR4302540.8250493/1‑94 (MQ=60)

                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             <  SRR4302540.8037100/94‑1 (MQ=60)

                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             <  SRR4302540.1729363/94‑1 (MQ=60)

                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             <  SRR4302540.8916506/94‑1 (MQ=60)

                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             <  SRR4302540.767687/94‑1 (MQ=60)

                                                                 GTTCGATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                             <  SRR4302540.2991429/94‑1 (MQ=60)

                                                                  TTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATG                            <  SRR4302540.512231/94‑1 (MQ=60)

                                                                   TCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGC                           <  SRR4302540.3006288/94‑1 (MQ=60)

                                                                    CTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCG                          >  SRR4302540.10163341/1‑94 (MQ=60)

                                                                    CTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCG                          <  SRR4302540.7345520/94‑1 (MQ=60)

                                                                    CTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCG                          <  SRR4302540.1517721/94‑1 (MQ=60)

                                                                    CTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCG                          >  SRR4302540.6308878/1‑94 (MQ=60)

                                                                     TATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGG                         <  SRR4302540.6424040/94‑1 (MQ=60)

                                                                      ATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGT                        >  SRR4302540.850090/1‑94 (MQ=60)

                                                                      ATACCGAAGAGGGAATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGT                        >  SRR4302540.3036373/1‑94 (MQ=60)

                                                                        ACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAA                      <  SRR4302540.7880531/94‑1 (MQ=60)

                                                                        ACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAA                      <  SRR4302540.7880529/94‑1 (MQ=60)

                                                                         CCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAA                     <  SRR4302540.3581682/94‑1 (MQ=60)

                                                                         CCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAA                     >  SRR4302540.3989990/1‑94 (MQ=60)

                                                                          CGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAA                    <  SRR4302540.9271253/94‑1 (MQ=60)

                                                                          CGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAA                    <  SRR4302540.4066184/94‑1 (MQ=60)

                                                                          CGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAA                    >  SRR4302540.6192656/1‑94 (MQ=60)

                                                                           GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAC                   <  SRR4302540.1165406/94‑1 (MQ=60)

                                                                           GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAC                   <  SRR4302540.5796689/94‑1 (MQ=60)

                                                                           GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAC                   >  SRR4302540.2734374/1‑94 (MQ=60)

                                                                            AAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACC                  >  SRR4302540.2456944/1‑94 (MQ=60)

                                                                              GAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAG                <  SRR4302540.7821379/94‑1 (MQ=60)

                                                                              GAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAG                >  SRR4302540.2212322/1‑94 (MQ=60)

                                                                               AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA               >  SRR4302540.5701867/1‑94 (MQ=60)

                                                                               AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA               <  SRR4302540.6099164/94‑1 (MQ=60)

                                                                                  GTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACC            <  SRR4302540.7165718/94‑1 (MQ=60)

                                                                                   TATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCG           <  SRR4302540.9199105/94‑1 (MQ=60)

                                                                                    ATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGC          >  SRR4302540.4776011/1‑94 (MQ=60)

                                                                                    ATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGC          >  SRR4302540.3052523/1‑94 (MQ=60)

                                                                                    ATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGC          <  SRR4302540.7584016/94‑1 (MQ=60)

                                                                                     TTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCA         >  SRR4302540.2027800/1‑94 (MQ=60)

                                                                                      TTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCAC        >  SRR4302540.6573770/1‑94 (MQ=60)

                                                                                      TTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCAC        <  SRR4302540.1951035/94‑1 (MQ=60)

                                                                                         TGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG     >  SRR4302540.8426335/1‑94 (MQ=60)

                                                                                          GACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGG    <  SRR4302540.6296721/94‑1 (MQ=60)

                                                                                          GACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGG    <  SRR4302540.1046947/94‑1 (MQ=60)

                                                                                           ACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGC   >  SRR4302540.5616298/1‑94 (MQ=60)

                                                                                            CCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCA  >  SRR4302540.1118295/1‑94 (MQ=60)

TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCA  >  NC_000913/1812389‑1812574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`