Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTTCC  >  NC_000913/1814973‑1815157
                                                                                             |                                                                                           
CAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGC                                                                                             >  SRR4302540.2058545/1‑94 (MQ=60)
 AAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTG                                                                                            >  SRR4302540.9300862/1‑94 (MQ=60)
  AAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGA                                                                                           >  SRR4302540.6597065/1‑94 (MQ=60)
   AGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGAC                                                                                          >  SRR4302540.2749752/1‑94 (MQ=60)
     TGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAA                                                                                        <  SRR4302540.7836376/94‑1 (MQ=60)
     TGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAA                                                                                        >  SRR4302540.4074489/1‑94 (MQ=60)
     TGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAA                                                                                        >  SRR4302540.1246716/1‑94 (MQ=60)
     TGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAA                                                                                        >  SRR4302540.7272738/1‑94 (MQ=60)
      GCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAAT                                                                                       <  SRR4302540.8079539/94‑1 (MQ=60)
       CATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATC                                                                                      <  SRR4302540.7548628/94‑1 (MQ=60)
        ATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCC                                                                                     >  SRR4302540.3122369/1‑94 (MQ=60)
          CCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCA                                                                                   <  SRR4302540.4471386/94‑1 (MQ=60)
           CCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCAT                                                                                  >  SRR4302540.5963098/1‑94 (MQ=60)
           CCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCAT                                                                                  <  SRR4302540.8276072/94‑1 (MQ=60)
            CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATT                                                                                 >  SRR4302540.9994054/1‑94 (MQ=60)
            CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATT                                                                                 >  SRR4302540.5259405/1‑94 (MQ=60)
              ATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGC                                                                               >  SRR4302540.8237857/1‑94 (MQ=60)
                GGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGA                                                                             >  SRR4302540.7150325/1‑94 (MQ=60)
                GGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGA                                                                             <  SRR4302540.2212172/94‑1 (MQ=60)
                 GCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGAC                                                                            >  SRR4302540.6438384/1‑94 (MQ=60)
                  CCAGACTCGGTTCATCACGACTCAGCTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA                                                                           <  SRR4302540.7341794/94‑1 (MQ=60)
                  CCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA                                                                           >  SRR4302540.9356384/1‑94 (MQ=60)
                  CCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACA                                                                           >  SRR4302540.7366157/1‑94 (MQ=60)
                  CCAGACTCGGTTCATCACGACTCAACGGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA                                                                           <  SRR4302540.7341793/94‑1 (MQ=60)
                   CAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAG                                                                          <  SRR4302540.3238226/94‑1 (MQ=60)
                   CAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAG                                                                          >  SRR4302540.588483/1‑94 (MQ=60)
                   CAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAG                                                                          <  SRR4302540.1619988/94‑1 (MQ=60)
                   CAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAG                                                                          <  SRR4302540.4702443/94‑1 (MQ=60)
                    AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGG                                                                         >  SRR4302540.7894566/1‑94 (MQ=60)
                    AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGG                                                                         >  SRR4302540.8663567/1‑94 (MQ=60)
                    AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGG                                                                         >  SRR4302540.9560425/1‑94 (MQ=60)
                    AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGG                                                                         >  SRR4302540.7621394/1‑94 (MQ=60)
                      ACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCC                                                                       >  SRR4302540.3429709/1‑94 (MQ=60)
                       CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCT                                                                      >  SRR4302540.5737984/1‑94 (MQ=60)
                       CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCT                                                                      <  SRR4302540.9606566/94‑1 (MQ=60)
                       CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCT                                                                      >  SRR4302540.4324441/1‑94 (MQ=60)
                         CGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCG                                                                    >  SRR4302540.7945323/1‑94 (MQ=60)
                          GGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGA                                                                   >  SRR4302540.9686317/1‑94 (MQ=60)
                            TTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCACATTGCGACAGGCCTCGATA                                                                 >  SRR4302540.3862841/1‑94 (MQ=60)
                             TCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAA                                                                <  SRR4302540.643497/94‑1 (MQ=60)
                              atctagcgcttAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAAT                                                               <  SRR4302540.5525015/83‑1 (MQ=60)
                              CATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAAT                                                               >  SRR4302540.7373758/1‑94 (MQ=60)
                               ATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATG                                                              >  SRR4302540.8035230/1‑94 (MQ=60)
                               ATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATG                                                              >  SRR4302540.1669620/1‑94 (MQ=60)
                                TCACGCCTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACACTCCCATTGCGACAGGCCGCGATAATGC                                                             <  SRR4302540.3914020/94‑1 (MQ=60)
                                TCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGC                                                             <  SRR4302540.3914024/94‑1 (MQ=60)
                                TCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGC                                                             <  SRR4302540.6996891/94‑1 (MQ=60)
                                TCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGC                                                             <  SRR4302540.3454253/94‑1 (MQ=60)
                                 CACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCC                                                            >  SRR4302540.6853779/1‑94 (MQ=60)
                                    GACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTA                                                         <  SRR4302540.6602480/94‑1 (MQ=60)
                                    GACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTA                                                         <  SRR4302540.6602481/94‑1 (MQ=60)
                                     GCTCAACTGCCCCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAG                                                        <  SRR4302540.929132/94‑1 (MQ=60)
                                        CAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTC                                                     >  SRR4302540.1319252/1‑94 (MQ=60)
                                        CAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTC                                                     <  SRR4302540.4529544/94‑1 (MQ=60)
                                        CAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTC                                                     >  SRR4302540.2705468/1‑94 (MQ=60)
                                         AACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCT                                                    <  SRR4302540.6518354/94‑1 (MQ=60)
                                         AACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCT                                                    >  SRR4302540.3184735/1‑94 (MQ=60)
                                          ACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG                                                   <  SRR4302540.4863918/94‑1 (MQ=60)
                                          ACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG                                                   >  SRR4302540.1653106/1‑94 (MQ=60)
                                            TGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGAC                                                 <  SRR4302540.6784688/94‑1 (MQ=60)
                                              CACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCT                                               >  SRR4302540.566402/1‑94 (MQ=60)
                                              CACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCT                                               <  SRR4302540.6148713/94‑1 (MQ=60)
                                                CCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTT                                             <  SRR4302540.7241203/94‑1 (MQ=60)
                                                 CGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG                                            <  SRR4302540.9452802/94‑1 (MQ=60)
                                                 CGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG                                            >  SRR4302540.7575905/1‑94 (MQ=60)
                                                 CGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG                                            >  SRR4302540.6569597/1‑94 (MQ=60)
                                                   CATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCT                                          <  SRR4302540.1522138/94‑1 (MQ=60)
                                                   CATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCT                                          <  SRR4302540.9400481/94‑1 (MQ=60)
                                                    ATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTT                                         >  SRR4302540.7247253/1‑94 (MQ=60)
                                                    ATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTT                                         >  SRR4302540.4939375/1‑94 (MQ=60)
                                                      GGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAA                                       <  SRR4302540.2764626/94‑1 (MQ=60)
                                                      GGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAA                                       >  SRR4302540.9530145/1‑94 (MQ=60)
                                                      GGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAA                                       <  SRR4302540.2764625/94‑1 (MQ=60)
                                                       GTAAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAG                                      <  SRR4302540.3815612/94‑1 (MQ=60)
                                                        TCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGC                                     <  SRR4302540.9734717/94‑1 (MQ=60)
                                                        TCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGC                                     <  SRR4302540.3127485/94‑1 (MQ=60)
                                                         CAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCC                                    >  SRR4302540.6710804/1‑94 (MQ=60)
                                                         CAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCC                                    <  SRR4302540.5527093/94‑1 (MQ=60)
                                                         CAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCC                                    >  SRR4302540.2172990/1‑94 (MQ=60)
                                                          AATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCA                                   >  SRR4302540.5470141/1‑94 (MQ=60)
                                                          AATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCA                                   <  SRR4302540.5741517/94‑1 (MQ=60)
                                                           ATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAA                                  >  SRR4302540.1891696/1‑94 (MQ=60)
                                                            TAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAA                                 <  SRR4302540.486715/94‑1 (MQ=60)
                                                              GCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAAT                               <  SRR4302540.1177117/94‑1 (MQ=60)
                                                               CCTGCCCATTCCCCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATC                              <  SRR4302540.8571247/94‑1 (MQ=60)
                                                               CCTGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATC                              <  SRR4302540.4243049/94‑1 (MQ=60)
                                                                CTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCA                             >  SRR4302540.9223145/1‑94 (MQ=60)
                                                                CTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCA                             >  SRR4302540.3977323/1‑94 (MQ=60)
                                                                 TGCCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT                            <  SRR4302540.4597309/94‑1 (MQ=60)
                                                                   CCCATTCGCCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCG                          <  SRR4302540.1568264/94‑1 (MQ=60)
                                                                   CCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCG                          <  SRR4302540.6144352/94‑1 (MQ=60)
                                                                   CCCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCG                          <  SRR4302540.174054/94‑1 (MQ=60)
                                                                    CCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGG                         >  SRR4302540.3747714/1‑94 (MQ=60)
                                                                    CCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGG                         >  SRR4302540.5501754/1‑94 (MQ=60)
                                                                    CCATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGG                         >  SRR4302540.3388555/1‑94 (MQ=60)
                                                                      ATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCA                       >  SRR4302540.9761317/1‑94 (MQ=60)
                                                                      ATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCA                       >  SRR4302540.4308850/1‑94 (MQ=60)
                                                                      ATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCA                       >  SRR4302540.2835048/1‑94 (MQ=60)
                                                                      ATTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCA                       >  SRR4302540.8708001/1‑94 (MQ=60)
                                                                       TTCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCAT                      <  SRR4302540.1811440/94‑1 (MQ=60)
                                                                        TCACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATT                     <  SRR4302540.1043957/94‑1 (MQ=60)
                                                                          ACCAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAA                   >  SRR4302540.4218667/1‑94 (MQ=60)
                                                                            CAGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACA                 <  SRR4302540.9281692/94‑1 (MQ=60)
                                                                             AGCGCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAA                >  SRR4302540.1148068/1‑94 (MQ=60)
                                                                               CGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATC              >  SRR4302540.8928214/1‑94 (MQ=60)
                                                                               CGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATC              <  SRR4302540.4419945/94‑1 (MQ=60)
                                                                                GCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCA             <  SRR4302540.3846173/94‑1 (MQ=60)
                                                                                GCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCA             >  SRR4302540.1295240/1‑94 (MQ=60)
                                                                                GCCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCA             >  SRR4302540.8629655/1‑94 (MQ=60)
                                                                                GCCGTCGGCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCA             <  SRR4302540.2012248/94‑1 (MQ=60)
                                                                                CCCGTCGTCGACGTGACAATCCCATTGCGACAGTCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCA             <  SRR4302540.5016602/94‑1 (MQ=60)
                                                                                 CCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAG            >  SRR4302540.5853013/1‑94 (MQ=60)
                                                                                 CCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAG            >  SRR4302540.7041461/1‑94 (MQ=60)
                                                                                 CCGTCGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAG            >  SRR4302540.7041460/1‑94 (MQ=60)
                                                                                  CGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGT           >  SRR4302540.9379128/1‑94 (MQ=60)
                                                                                   GTCGTCGACGTAACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTA          >  SRR4302540.3775320/1‑94 (MQ=60)
                                                                                    TCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAA         <  SRR4302540.3253196/94‑1 (MQ=60)
                                                                                     CGTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAG        <  SRR4302540.8525518/94‑1 (MQ=60)
                                                                                      GTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGC       >  SRR4302540.3665382/1‑94 (MQ=60)
                                                                                      GTCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGC       <  SRR4302540.9828773/94‑1 (MQ=60)
                                                                                       TCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCG      >  SRR4302540.8434016/1‑94 (MQ=60)
                                                                                       TCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCG      >  SRR4302540.2213520/1‑94 (MQ=60)
                                                                                       TCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCG      <  SRR4302540.6045719/94‑1 (MQ=60)
                                                                                       TCGACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCG      <  SRR4302540.4057614/94‑1 (MQ=60)
                                                                                       TCGACGCGACAAGCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCG      <  SRR4302540.617969/94‑1 (MQ=60)
                                                                                        CGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGT     >  SRR4302540.3666960/1‑94 (MQ=60)
                                                                                        CGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGT     >  SRR4302540.2138058/1‑94 (MQ=60)
                                                                                         GACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTT    <  SRR4302540.4176570/94‑1 (MQ=60)
                                                                                         GACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTT    >  SRR4302540.316815/1‑94 (MQ=60)
                                                                                          ACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTTC   >  SRR4302540.9950466/1‑94 (MQ=60)
                                                                                          ACGCGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTTC   <  SRR4302540.10141895/94‑1 (MQ=60)
                                                                                           CGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTTCC  <  SRR4302540.305381/94‑1 (MQ=60)
                                                                                           CGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTTCC  >  SRR4302540.4367625/1‑94 (MQ=60)
                                                                                             |                                                                                           
CAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCATCGGCATTAACAATCAGTAAGCGTTCC  >  NC_000913/1814973‑1815157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑