Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,830,747	T→C	L99P (CTG→CCG)	xthA →	exonuclease III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,830,747	0	T	C	100.0%	646.7 / NA	202	L99P (CTG→CCG)	xthA	exonuclease III
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (120/82); total (120/82)

Only 100 of 227 total aligned reads displayed.

CCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT  >  NC_000913/1830657‑1830836

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         >  2:4425234/1‑93 (MQ=255)

ccAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgc                                                                                         <  2:4822914/93‑1 (MQ=255)

 cAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgct                                                                                        >  2:3983002/1‑93 (MQ=255)

 cAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgct                                                                                        >  2:962304/1‑93 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGTAAATCCCTCAcagctg                                                                                       >  2:4329817/1‑93 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgctg                                                                                       >  1:1352503/1‑93 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgctg                                                                                       >  1:3660518/1‑93 (MQ=255)

  aaaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCAccgctg                                                                                       >  2:4602116/1‑93 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      >  1:5714475/1‑93 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  1:603686/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  1:541735/93‑1 (MQ=255)

   aaGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTgg                                                                                      <  1:1695524/93‑1 (MQ=255)

    agagACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTggg                                                                                     <  1:454793/93‑1 (MQ=255)

     gagaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGt                                                                                    >  1:8522605/1‑93 (MQ=255)

      agaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTa                                                                                   >  1:2616800/1‑93 (MQ=255)

      agaCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTa                                                                                   <  2:1517951/93‑1 (MQ=255)

        aCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAAt                                                                                 <  2:5078669/93‑1 (MQ=255)

        aCGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAAt                                                                                 <  2:5968538/93‑1 (MQ=255)

          gcagATTGCCGTGCGTCGCGGATTTCCCGGTGACGAAACAGAAACGCAGCGACGGAATATTCTGGCGACAATCCCCTCACCACTAGATAATGt                                                                               <  1:8920462/90‑1 (MQ=255)

          gCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGt                                                                               <  1:513117/93‑1 (MQ=255)

          gCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGt                                                                               >  1:5919738/1‑93 (MQ=255)

          gCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGt                                                                               <  2:1998869/93‑1 (MQ=255)

           ccGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTc                                                                              >  1:7914366/1‑93 (MQ=255)

           ccGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTc                                                                              >  1:1869787/1‑93 (MQ=255)

             gATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCAc                                                                            <  2:9672359/93‑1 (MQ=255)

             gATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCAc                                                                            >  2:3405070/1‑93 (MQ=255)

             gATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGCCAc                                                                            >  1:6630243/1‑93 (MQ=255)

               ttGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCCGGGTAATGTCAACg                                                                          >  1:331992/1‑93 (MQ=255)

                tGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCCCCGCTGGGTAATGTCACCGt                                                                         <  2:6697493/93‑1 (MQ=255)

                tGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGCAATGTCACCGt                                                                         >  2:9092186/1‑93 (MQ=255)

                 gCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTg                                                                        >  1:3866320/1‑93 (MQ=255)

                 gCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTg                                                                        <  1:4302432/93‑1 (MQ=255)

                  gcGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGa                                                                       <  1:6249820/92‑1 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     <  1:8320478/93‑1 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     >  2:1643979/1‑93 (MQ=255)

                    gTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATc                                                                     <  2:4255816/93‑1 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    >  2:803463/1‑93 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    <  2:8359622/93‑1 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    <  1:401817/93‑1 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    >  2:8502124/1‑93 (MQ=255)

                     tGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCa                                                                    >  2:3321097/1‑93 (MQ=255)

                       cGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAAc                                                                  <  1:4569315/93‑1 (MQ=255)

                       cGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAAc                                                                  <  1:6953126/93‑1 (MQ=255)

                       cGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAAc                                                                  <  1:6765033/93‑1 (MQ=255)

                        gTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACg                                                                 <  2:3846216/93‑1 (MQ=255)

                         tCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTAACCGTGATCAACgg                                                                >  2:7296089/1‑93 (MQ=255)

                            cgGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTa                                                             <  1:8395150/93‑1 (MQ=255)

                              gCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACt                                                           >  2:1365638/1‑93 (MQ=255)

                              gCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACt                                                           >  2:9439865/1‑93 (MQ=255)

                                 ttCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTcc                                                        <  2:1206949/93‑1 (MQ=255)

                                    ccGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGc                                                     >  1:1616500/1‑93 (MQ=255)

                                       gTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAgg                                                  >  2:6046216/1‑93 (MQ=255)

                                       gTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAgg                                                  >  2:7175946/1‑93 (MQ=255)

                                       gTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAgg                                                  <  1:7352040/93‑1 (MQ=255)

                                        tGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAggg                                                 <  1:7301285/93‑1 (MQ=255)

                                        tGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAggg                                                 >  2:9804681/1‑93 (MQ=255)

                                           cgacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGa                                              >  2:1336832/1‑93 (MQ=255)

                                           cgacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGa                                              <  2:2853517/93‑1 (MQ=255)

                                           cgacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGa                                              <  1:2223085/93‑1 (MQ=255)

                                           cgacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGa                                              >  2:9182904/1‑93 (MQ=255)

                                            gacgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGaa                                             <  1:9857388/93‑1 (MQ=255)

                                             acgaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGaaa                                            >  1:1046690/1‑93 (MQ=255)

                                               gaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGc                                          >  2:9302803/1‑93 (MQ=255)

                                               gaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGc                                          <  1:3948188/93‑1 (MQ=255)

                                               gaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGc                                          >  1:8550485/1‑93 (MQ=255)

                                               gaAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACAGTTACTTCCCGCAGGGTGAAAGc                                          >  2:5519652/1‑93 (MQ=255)

                                                aaGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAgac                                         >  1:853069/1‑91 (MQ=255)

                                                aaGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGcc                                         <  1:8248060/93‑1 (MQ=255)

                                                  gagGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCcgc                                       >  1:9531949/1‑93 (MQ=255)

                                                    ggCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGa                                     >  1:9076403/1‑93 (MQ=255)

                                                    ggCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGa                                     >  1:8154296/1‑93 (MQ=255)

                                                    ggCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGa                                     >  1:8062722/1‑93 (MQ=255)

                                                      cgcAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGAcc                                   >  1:3682752/1‑93 (MQ=255)

                                                       gcAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCa                                  <  2:7692638/93‑1 (MQ=255)

                                                       gcAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCa                                  <  1:4927267/93‑1 (MQ=255)

                                                        cAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCAt                                 <  2:7158554/93‑1 (MQ=255)

                                                         aGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATc                                <  2:1873614/93‑1 (MQ=255)

                                                         aGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATc                                >  1:7604892/1‑93 (MQ=255)

                                                          gcggcgGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATcc                               >  1:7763813/1‑93 (MQ=255)

                                                          gcggcgGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATcc                               >  1:4505912/1‑93 (MQ=255)

                                                           cggcggATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATcag                              >  1:3603080/1‑91 (MQ=255)

                                                             gcggATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGAt                            >  2:7763270/1‑93 (MQ=255)

                                                               ggATTATTATGGC‑GAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATaaa                         >  2:7596220/1‑93 (MQ=255)

                                                                   tattatGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAAtt                      >  2:6420210/1‑93 (MQ=255)

                                                                    attatGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTc                     >  1:7684044/1‑93 (MQ=255)

                                                                    attatGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTc                     >  1:8827702/1‑93 (MQ=255)

                                                                      tatGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTccc                   >  1:6580724/1‑93 (MQ=255)

                                                                       atGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCg                  <  1:6428148/93‑1 (MQ=255)

                                                                            ggAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCaaa             >  1:10034278/1‑93 (MQ=255)

                                                                             gAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCaaaa            <  1:3089941/93‑1 (MQ=255)

                                                                              aaaTCCCCTCACCGCTGGGTAATGTCACCGTGATAAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAg           <  2:2507601/93‑1 (MQ=255)

                                                                                aTCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAgcg         >  1:9551904/1‑93 (MQ=255)

                                                                                 tCCCCTCACGCGTGGATAATGTCCCCGTGATCAACGGTTCATTCCCGGAGGGTGACAGCCGCCACCTTCCGATAAAATTCCCGGCAAAAgcgc        <  2:4185400/93‑1 (MQ=255)

                                                                                 tCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAgcgc        >  1:2480753/1‑93 (MQ=255)

                                                                                  ccccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCa       >  1:5121180/1‑93 (MQ=255)

                                                                                    ccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGt     >  1:444744/1‑93 (MQ=255)

                                                                                    ccTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGt     >  1:3139541/1‑93 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtt    <  2:6522643/93‑1 (MQ=255)

                                                                                     cTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGtt    >  2:5393130/1‑93 (MQ=255)

                                                                                       cACCGCTGGGGAATGTCACCGTGATCACCGGTTACTTCCCGCAGGGCAAAAGCTCAGACCATCCGATAAAATTCCCGGGAAAAGTGCAGtttt  >  2:8871683/1‑93 (MQ=255)

CCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTT  >  NC_000913/1830657‑1830836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  >  NC_000913/1830654‑1830840

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACC                                                                                               <  SRR4302540.1581612/94‑1 (MQ=60)

 TACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCG                                                                                              <  SRR4302540.1609537/94‑1 (MQ=60)

   CCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCT                                                                                            >  SRR4302540.4425164/1‑94 (MQ=60)

    CAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTG                                                                                           >  SRR4302540.9735613/1‑94 (MQ=60)

    CAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTG                                                                                           >  SRR4302540.3700589/1‑94 (MQ=60)

    CAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTG                                                                                           >  SRR4302540.1366732/1‑94 (MQ=60)

     AAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGG                                                                                          >  SRR4302540.5777377/1‑94 (MQ=60)

     AAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGG                                                                                          >  SRR4302540.328273/1‑94 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302540.547600/94‑1 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302540.610148/94‑1 (MQ=60)

      AAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGG                                                                                         <  SRR4302540.1713898/94‑1 (MQ=60)

       AGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGT                                                                                        >  SRR4302540.8621644/1‑94 (MQ=60)

       AGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGT                                                                                        <  SRR4302540.459645/94‑1 (MQ=60)

       AGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGAGACGACGAAGAGGCGCAGCGGCGGCTTATTATGTCGGAAATCCCCTCACCGCTGGGC                                                                                        >  SRR4302540.8621648/1‑94 (MQ=60)

        GAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTA                                                                                       >  SRR4302540.2645079/1‑94 (MQ=60)

         AGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAA                                                                                      <  SRR4302540.3754081/94‑1 (MQ=60)

          GACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAAT                                                                                     <  SRR4302540.2526453/94‑1 (MQ=60)

            CGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGT                                                                                   >  SRR4302540.5985135/1‑94 (MQ=60)

            CGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGT                                                                                   <  SRR4302540.6529857/94‑1 (MQ=60)

            CGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGT                                                                                   >  SRR4302540.8388530/1‑94 (MQ=60)

             GCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTC                                                                                  <  SRR4302540.518628/94‑1 (MQ=60)

             GCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTC                                                                                  >  SRR4302540.1890274/1‑94 (MQ=60)

             GCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTC                                                                                  <  SRR4302540.4413496/94‑1 (MQ=60)

             GCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTC                                                                                  >  SRR4302540.8006636/1‑94 (MQ=60)

              CCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCA                                                                                 >  SRR4302540.5180101/1‑94 (MQ=60)

              CCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCA                                                                                 <  SRR4302540.8644131/94‑1 (MQ=60)

              CCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCA                                                                                 <  SRR4302540.4048689/94‑1 (MQ=60)

               CGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCAC                                                                                >  SRR4302540.3578351/1‑94 (MQ=60)

               CGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGCCAC                                                                                >  SRR4302540.6703637/1‑94 (MQ=60)

                GATTGCCGTGCGTAGCGGCTTTCCCGGTCACGCGGACGAGGCGCAGCGGCGGATTATCATGCCGGAAATCCCCTCACTGCTGGGTCATGTCACC                                                                               <  SRR4302540.3875704/94‑1 (MQ=60)

                 ATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCG                                                                              >  SRR4302540.8072063/1‑94 (MQ=60)

                 ATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCCGGGTAATGTCAACG                                                                              >  SRR4302540.335335/1‑94 (MQ=60)

                   TGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTG                                                                            >  SRR4302540.3908349/1‑94 (MQ=60)

                    GCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGA                                                                           <  SRR4302540.4349261/94‑1 (MQ=60)

                     GCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGAT                                                                          <  SRR4302540.6319365/94‑1 (MQ=60)

                      CGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATC                                                                         <  SRR4302540.7809764/94‑1 (MQ=60)

                      CGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATC                                                                         >  SRR4302540.4113014/1‑94 (MQ=60)

                      CGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATC                                                                         >  SRR4302540.10153110/1‑94 (MQ=60)

                       GTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCA                                                                        <  SRR4302540.8417060/94‑1 (MQ=60)

                       GTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCA                                                                        >  SRR4302540.7910744/1‑94 (MQ=60)

                        TGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAA                                                                       <  SRR4302540.406008/94‑1 (MQ=60)

                          CGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACG                                                                     <  SRR4302540.4618640/94‑1 (MQ=60)

                          CGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACG                                                                     <  SRR4302540.2356396/94‑1 (MQ=60)

                          CGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACG                                                                     <  SRR4302540.6839793/94‑1 (MQ=60)

                          CGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACG                                                                     <  SRR4302540.7030485/94‑1 (MQ=60)

                               CGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTAC                                                                <  SRR4302540.8492571/94‑1 (MQ=60)

                                GGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACT                                                               >  SRR4302540.3791144/1‑94 (MQ=60)

                                 GCTTTCCCGGTGCCGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTT                                                              <  SRR4302540.453586/94‑1 (MQ=60)

                                 GCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTT                                                              >  SRR4302540.3981542/1‑94 (MQ=60)

                                 GCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTT                                                              <  SRR4302540.4613050/94‑1 (MQ=60)

                                  CTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTC                                                             >  SRR4302540.9652809/1‑94 (MQ=60)

                                   TTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCC                                                            >  SRR4302540.7426851/1‑94 (MQ=60)

                                    TTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCC                                                           <  SRR4302540.5414832/94‑1 (MQ=60)

                                    TTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCC                                                           >  SRR4302540.7708720/1‑94 (MQ=60)

                                      CCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGC                                                         <  SRR4302540.6171372/94‑1 (MQ=60)

                                      CCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGC                                                         >  SRR4302540.1870403/1‑94 (MQ=60)

                                      CCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGC                                                         >  SRR4302540.1634232/1‑94 (MQ=60)

                                       CCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCA                                                        >  SRR4302540.4788181/1‑94 (MQ=60)

                                        CGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAG                                                       >  SRR4302540.895795/1‑94 (MQ=60)

                                         GGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCCGG                                                      >  SRR4302540.864016/1‑94 (MQ=60)

                                         GGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGG                                                      >  SRR4302540.6104827/1‑94 (MQ=60)

                                         GGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGG                                                      <  SRR4302540.5716342/94‑1 (MQ=60)

                                          GTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGG                                                     <  SRR4302540.7434045/94‑1 (MQ=60)

                                           TGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGT                                                    <  SRR4302540.7382781/94‑1 (MQ=60)

                                           TGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGG                                                    >  SRR4302540.7327798/1‑94 (MQ=60)

                                              CGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAA                                                 <  SRR4302540.2247048/94‑1 (MQ=60)

                                              CGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAA                                                 >  SRR4302540.5840371/1‑94 (MQ=60)

                                               GACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAA                                                <  SRR4302540.9972577/94‑1 (MQ=60)

                                               GACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAA                                                >  SRR4302540.8396953/1‑94 (MQ=60)

                                               GACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAA                                                >  SRR4302540.1057327/1‑94 (MQ=60)

                                                ACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAG                                               >  SRR4302540.8607245/1‑94 (MQ=60)

                                                ACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAG                                               >  SRR4302540.2624993/1‑94 (MQ=60)

                                                ACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGGAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGGGAAAG                                               >  SRR4302540.902950/1‑94 (MQ=60)

                                                 CGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGC                                              >  SRR4302540.8649806/1‑94 (MQ=60)

                                                 CGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGC                                              >  SRR4302540.4992930/1‑94 (MQ=60)

                                                 CGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGC                                              >  SRR4302540.9617108/1‑94 (MQ=60)

                                                  GAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCC                                             >  SRR4302540.7989857/1‑94 (MQ=60)

                                                  GAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCC                                             <  SRR4302540.3990812/94‑1 (MQ=60)

                                                  GAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGAC                                             >  SRR4302540.862125/1‑94 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCG                                            <  SRR4302540.8343930/94‑1 (MQ=60)

                                                   AAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTGACTTCCCGCAGGGTGAAAGCCG                                            <  SRR4302540.8343928/94‑1 (MQ=60)

                                                    AGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGC                                           >  SRR4302540.10106087/1‑94 (MQ=60)

                                                    AGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGC                                           >  SRR4302540.9644788/1‑94 (MQ=60)

                                                      AGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGA                                         >  SRR4302540.9185421/1‑94 (MQ=60)

                                                      AGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGA                                         >  SRR4302540.8248973/1‑94 (MQ=60)

                                                      AGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGA                                         >  SRR4302540.8156303/1‑94 (MQ=60)

                                                        GCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACC                                       >  SRR4302540.3723000/1‑94 (MQ=60)

                                                        GCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACC                                       <  SRR4302540.8746105/94‑1 (MQ=60)

                                                        GCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACC                                       <  SRR4302540.3077158/94‑1 (MQ=60)

                                                         CGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCA                                      >  SRR4302540.6703419/1‑94 (MQ=60)

                                                         CGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCA                                      >  SRR4302540.7552677/1‑94 (MQ=60)

                                                          GCAGCGGGGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGGGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCAT                                     <  SRR4302540.3130390/94‑1 (MQ=60)

                                                          GCAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCAT                                     <  SRR4302540.4980378/94‑1 (MQ=60)

                                                           CAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATC                                    >  SRR4302540.1161741/1‑94 (MQ=60)

                                                           CAGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATC                                    >  SRR4302540.7690342/1‑94 (MQ=60)

                                                            AGCGGCGGATTATTATGGCGGAAATTCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCTCCACCATCC                                   >  SRR4302540.8413523/1‑94 (MQ=60)

                                                            AGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCC                                   >  SRR4302540.4554749/1‑94 (MQ=60)

                                                            AGCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCC                                   >  SRR4302540.7854560/1‑94 (MQ=60)

                                                             GCGGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCAG                                  >  SRR4302540.3642454/1‑94 (MQ=60)

                                                               GGCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGAT                                >  SRR4302540.2141707/1‑94 (MQ=60)

                                                                GCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATA                               <  SRR4302540.6763549/94‑1 (MQ=60)

                                                                GCGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATA                               <  SRR4302540.8177043/94‑1 (MQ=60)

                                                                 CGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAA                              >  SRR4302540.4566009/1‑94 (MQ=60)

                                                                 CGGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAA                              >  SRR4302540.9131154/1‑94 (MQ=60)

                                                                  GGATTATTATGGCGGAAATCCCCTCCCCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAA                             <  SRR4302540.1637732/94‑1 (MQ=60)

                                                                  GGATTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAA                             <  SRR4302540.1637731/94‑1 (MQ=60)

                                                                     TTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATT                          >  SRR4302540.6762214/1‑94 (MQ=60)

                                                                     TTATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATT                          >  SRR4302540.3722857/1‑94 (MQ=60)

                                                                      TATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTC                         >  SRR4302540.7771143/1‑94 (MQ=60)

                                                                      TATTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTC                         >  SRR4302540.8929790/1‑94 (MQ=60)

                                                                       ATTATGGCGGAAATCCCCTCACCGCTGGGGAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCC                        >  SRR4302540.3685760/1‑94 (MQ=60)

                                                                        TTATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCC                       >  SRR4302540.6653619/1‑94 (MQ=60)

                                                                          ATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGG                     <  SRR4302540.6499694/94‑1 (MQ=60)

                                                                          ATGGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGGTACTTCCCGCAGGGTGAAAGCCGCGACCCTCCGATAAAATTACCGG                     >  SRR4302540.2292256/1‑94 (MQ=60)

                                                                            GGCGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCA                   <  SRR4302540.4889872/94‑1 (MQ=60)

                                                                              CGGAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAA                 >  SRR4302540.10150984/1‑94 (MQ=60)

                                                                                GAAATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAG               <  SRR4302540.3123838/94‑1 (MQ=60)

                                                                                  AATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCG             >  SRR4302540.9664885/1‑94 (MQ=60)

                                                                                   ATCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGC            >  SRR4302540.2507480/1‑94 (MQ=60)

                                                                                    TCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCACAAGCGCA           >  SRR4302540.7014736/1‑94 (MQ=60)

                                                                                    TCCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCA           >  SRR4302540.5176628/1‑94 (MQ=60)

                                                                                     CCCCTCCCCGCTGGGTAATGTCACCGTGCTCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAG          <  SRR4302540.3358265/94‑1 (MQ=60)

                                                                                     CCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAG          <  SRR4302540.8479346/94‑1 (MQ=60)

                                                                                     CCCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAG          >  SRR4302540.5196392/1‑94 (MQ=60)

                                                                                      CCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGT         >  SRR4302540.159455/1‑94 (MQ=60)

                                                                                      CCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGT         >  SRR4302540.3173778/1‑94 (MQ=60)

                                                                                      CCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGT         >  SRR4302540.449479/1‑94 (MQ=60)

                                                                                      CCCTCACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGT         >  SRR4302540.6337042/1‑94 (MQ=60)

                                                                                          CACCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTA     >  SRR4302540.7913922/1‑94 (MQ=60)

                                                                                            CCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATC   <  SRR4302540.2854866/94‑1 (MQ=60)

                                                                                            CCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATC   >  SRR4302540.7305717/1‑94 (MQ=60)

                                                                                            CCGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATA   >  SRR4302540.6558506/1‑94 (MQ=60)

                                                                                             CGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  >  SRR4302540.6979046/1‑94 (MQ=60)

                                                                                             CGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  <  SRR4302540.10102305/94‑1 (MQ=60)

TGACCAAAGAGACGCCGATTGCCGTGCGTCGCGGCTTTCCCGGTGACGACGAAGAGGCGCAGCGGCGGATTATTATGGCGGAAATCCCCTCACTGCTGGGTAATGTCACCGTGATCAACGGTTACTTCCCGCAGGGTGAAAGCCGCGACCATCCGATAAAATTCCCGGCAAAAGCGCAGTTTTATCA  >  NC_000913/1830654‑1830840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`