Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,928,564 |
T→C |
T70A (ACC→GCC) |
yebG ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,928,564 | 0 | T | C | 99.6%
| 828.7
/ ‑5.3
| 261 | T70A (ACC→GCC) | yebG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (132/128); total (132/129) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.29e-01 |
Only 100 of 281 total aligned reads displayed.
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGG > NC_000913/1928474‑1928653
|
aGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGgcgc > 1:8134453/1‑93 (MQ=255)
aGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGgcgc > 2:3152424/1‑93 (MQ=255)
aGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGgcgc > 1:6522153/1‑93 (MQ=255)
aGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGgcgc > 2:8559884/1‑93 (MQ=255)
gTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCt < 1:6022163/93‑1 (MQ=255)
ttGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTc < 1:5852491/93‑1 (MQ=255)
tGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCa < 2:6501081/93‑1 (MQ=255)
gCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAg > 1:2597237/1‑93 (MQ=255)
gCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAg > 1:6194281/1‑93 (MQ=255)
ttCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGca > 2:5548227/1‑93 (MQ=255)
tCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGcac > 2:1472534/1‑93 (MQ=255)
tCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGcac < 2:2692417/93‑1 (MQ=255)
tCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGcac > 2:5207307/1‑93 (MQ=255)
cAGGCAGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGcaca < 2:580771/93‑1 (MQ=255)
ggCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATc < 2:334093/93‑1 (MQ=255)
gCCGCGTGTGAGGCACCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCt < 2:1060070/93‑1 (MQ=255)
ccGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtt > 2:660303/1‑93 (MQ=255)
ccGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtt < 1:9598552/93‑1 (MQ=255)
cgcgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATtttt > 2:7938647/1‑93 (MQ=255)
gcgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtttt < 1:8904218/93‑1 (MQ=255)
gcgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtttt < 2:6185677/93‑1 (MQ=255)
gcgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtttt < 1:7026674/93‑1 (MQ=255)
cgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCttttt > 2:1713518/1‑93 (MQ=255)
cgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCttttt < 1:1486350/93‑1 (MQ=255)
cgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCttttt < 2:9741351/93‑1 (MQ=255)
cgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCttttt > 2:6918558/1‑93 (MQ=255)
cgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCttttt < 1:2870087/93‑1 (MQ=255)
tgtgAGGCATCTTCCTCTTCGTATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGt > 1:1811694/1‑93 (MQ=255)
tgAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTc < 1:3051150/93‑1 (MQ=255)
tgAGGAATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTc < 1:1124816/93‑1 (MQ=255)
aGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTg < 1:2242653/93‑1 (MQ=255)
ggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgc > 1:913511/1‑93 (MQ=255)
gCATCTTACTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgcc < 1:6306592/93‑1 (MQ=255)
cATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgcca < 2:7074087/93‑1 (MQ=255)
aTCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccag < 2:3037030/93‑1 (MQ=255)
tCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagc > 2:8190555/1‑93 (MQ=255)
cTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcc < 1:8699624/93‑1 (MQ=255)
ttCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca < 2:8799270/93‑1 (MQ=255)
ttCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca > 2:2302079/1‑93 (MQ=255)
ttCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca < 2:4975390/93‑1 (MQ=255)
ttCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca < 1:6083048/93‑1 (MQ=255)
ttCCCCTTCCGATTCAGCACCGACGACCTGTGGGGACGGTAATTTTCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca < 1:7926938/93‑1 (MQ=255)
ctCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca < 1:9378399/92‑1 (MQ=255)
tCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAt > 1:4462259/1‑93 (MQ=255)
tCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAt > 2:9804744/1‑93 (MQ=255)
ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAg < 1:5678201/93‑1 (MQ=255)
tctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGc < 1:9881330/93‑1 (MQ=255)
tctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGc < 2:7362094/93‑1 (MQ=255)
tCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaa < 1:9545748/93‑1 (MQ=255)
tCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaa < 1:7448551/93‑1 (MQ=255)
cgcaTTCAGCACCGACGACCTGTGCGGACGGTAATTCGCCGGTTTCAAGACTGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaaa < 2:5452276/90‑1 (MQ=255)
cGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaaa < 2:7825295/93‑1 (MQ=255)
cGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaaa > 1:3864723/1‑93 (MQ=255)
cGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaaa < 1:4142772/93‑1 (MQ=255)
aTTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAggg > 1:6910186/1‑93 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc > 2:9011787/1‑93 (MQ=255)
aGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTc < 2:4419854/93‑1 (MQ=255)
cACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAc < 1:5369053/93‑1 (MQ=255)
ccGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGt > 2:6382480/1‑93 (MQ=255)
gacgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTg > 1:2014055/1‑93 (MQ=255)
gacgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTg > 2:7250292/1‑93 (MQ=255)
acgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGc > 1:636467/1‑93 (MQ=255)
cgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCt > 2:3727088/1‑93 (MQ=255)
gacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTc > 2:9485336/1‑93 (MQ=255)
acCTGTGGGGACGGTAATTTGCCGGTTTTGAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCg > 1:10027755/1‑93 (MQ=255)
acCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCg < 1:7702560/93‑1 (MQ=255)
cTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTc < 1:9168580/93‑1 (MQ=255)
tgtgGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCt < 1:8355718/93‑1 (MQ=255)
tgtgGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCt > 2:1895031/1‑93 (MQ=255)
tgtgGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCt < 2:5489808/93‑1 (MQ=255)
gggACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCa < 1:6817904/93‑1 (MQ=255)
gACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAtt > 2:7516209/1‑93 (MQ=255)
gTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCa > 2:7838631/1‑93 (MQ=255)
aaTTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACt > 2:5683418/1‑93 (MQ=255)
aTTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTg > 2:2941781/1‑93 (MQ=255)
tttGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTgg < 1:8605959/93‑1 (MQ=255)
ttGCCGGTTTTCAGAATGGCGCTCAGCCCATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGga < 1:1028706/93‑1 (MQ=255)
tGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGgag < 2:4838696/93‑1 (MQ=255)
ccGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGaa < 1:2699639/93‑1 (MQ=255)
ggTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAtt < 2:5308032/93‑1 (MQ=255)
ggTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAtt < 2:2078532/93‑1 (MQ=255)
ggTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAtt > 1:7838495/1‑93 (MQ=255)
gTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTGACGTTGCTCGTCTTCCATTTGCACTGGAGAAttt > 1:7185407/1‑93 (MQ=255)
gTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAttt > 1:4938083/1‑93 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg < 1:8502350/93‑1 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg > 2:5919345/1‑93 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg > 1:2416980/1‑93 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg > 1:9781427/1‑93 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTAGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg < 1:3685100/93‑1 (MQ=255)
tttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGt < 2:8362676/93‑1 (MQ=255)
tttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGt < 1:7502370/93‑1 (MQ=255)
ttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTc < 1:4834546/93‑1 (MQ=255)
aGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGc > 2:4050356/1‑93 (MQ=255)
gAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGcc > 1:6861384/1‑93 (MQ=255)
gAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGcc < 1:3278963/93‑1 (MQ=255)
gAATGGCGATCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGAATTCACGTTACTCGACTACAATTTGCACTGGAGAATTTGTCAGcc < 1:8971877/93‑1 (MQ=255)
aaTGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCa > 1:2808969/1‑93 (MQ=255)
aaTGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCa < 2:3633262/93‑1 (MQ=255)
aTGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAGGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAg > 1:5544008/1‑93 (MQ=255)
tGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAgg > 2:1331049/1‑93 (MQ=255)
|
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGG > NC_000913/1928474‑1928653
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTC > NC_000913/1928471‑1928657
|
GCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGC < SRR4302540.7835825/94‑1 (MQ=60)
GCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGC > SRR4302540.117408/1‑94 (MQ=60)
CAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTTAGAATGGCG > SRR4302540.369630/1‑94 (MQ=60)
CAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCG > SRR4302540.4893416/1‑94 (MQ=60)
CAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCG < SRR4302540.8343666/94‑1 (MQ=60)
CAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCG < SRR4302540.6008032/94‑1 (MQ=60)
CAAGTTGCTTCAGGCCGCGCGTGAGGCAACTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGACTGGCG > SRR4302540.3647273/1‑94 (MQ=60)
AAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGC > SRR4302540.8228865/1‑94 (MQ=60)
AAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGC > SRR4302540.6594590/1‑94 (MQ=60)
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCT > SRR4302540.7045870/1‑94 (MQ=60)
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTAAGCCCCGACGACCTGTGGGGAGGGCAATTTCCCGGTTTCCAGACTGGCGCT > SRR4302540.7045872/1‑94 (MQ=60)
GTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTCATTTGCCGGTTTTCAGAATGGCGCTC > SRR4302540.1599108/1‑94 (MQ=60)
GTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTC > SRR4302540.7233800/1‑94 (MQ=60)
GTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTC < SRR4302540.6088971/94‑1 (MQ=60)
TTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCA < SRR4302540.3226930/94‑1 (MQ=60)
TTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCA < SRR4302540.5917220/94‑1 (MQ=60)
TTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGCAATTTGCCGGTTTTCAGAATGGCGCTCA > SRR4302540.1077004/1‑94 (MQ=60)
TGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAG > SRR4302540.2625245/1‑94 (MQ=60)
TGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAG > SRR4302540.6263243/1‑94 (MQ=60)
TGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAG > SRR4302540.6263245/1‑94 (MQ=60)
CTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTCATTTGCCGGTTTTGAGAATGGTGCTCAGCA > SRR4302540.3559935/1‑94 (MQ=60)
TTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCAC < SRR4302540.6936197/94‑1 (MQ=60)
TCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGAGTCAGCACCGACGACCTGTGGGGACTGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACA < SRR4302540.9782430/94‑1 (MQ=60)
CAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACAT < SRR4302540.8845358/94‑1 (MQ=60)
CAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACAT > SRR4302540.9649305/1‑94 (MQ=60)
AGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATC > SRR4302540.8475627/1‑94 (MQ=60)
GGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCT < SRR4302540.9702344/94‑1 (MQ=60)
GGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCT < SRR4302540.9695101/94‑1 (MQ=60)
CCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTT < SRR4302540.9711797/94‑1 (MQ=60)
CGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTT < SRR4302540.8789917/94‑1 (MQ=60)
CGCGTGTGAGGCATCTTCCTCTTCGGATCCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTT < SRR4302540.5216317/94‑1 (MQ=60)
GCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTT < SRR4302540.9007309/94‑1 (MQ=60)
GCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTT < SRR4302540.7104733/94‑1 (MQ=60)
GCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTT < SRR4302540.9304494/94‑1 (MQ=60)
CGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTG < SRR4302540.2901259/94‑1 (MQ=60)
CGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTG < SRR4302540.1502671/94‑1 (MQ=60)
GTGTGAGGCATCTTCCTCTTCGTATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGT > SRR4302540.1831465/1‑94 (MQ=60)
TGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCT < SRR4302540.3084630/94‑1 (MQ=60)
TGAGGAATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCT < SRR4302540.1136514/94‑1 (MQ=60)
GAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTG < SRR4302540.2774894/94‑1 (MQ=60)
AGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGC < SRR4302540.2266753/94‑1 (MQ=60)
AGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGC > SRR4302540.923177/1‑94 (MQ=60)
GCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCA > SRR4302540.4987265/1‑94 (MQ=60)
GCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCA > SRR4302540.4987264/1‑94 (MQ=60)
GCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCA < SRR4302540.7664357/94‑1 (MQ=60)
GCATCTTACTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCA < SRR4302540.6376824/94‑1 (MQ=60)
CATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAG < SRR4302540.8373758/94‑1 (MQ=60)
ATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGC > SRR4302540.4708583/1‑94 (MQ=60)
ATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGGTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGC > SRR4302540.6565194/1‑94 (MQ=60)
ATCTTCCTCTTCGGATTCAGCACAGACGACCTGTGGGGACGGTAATCTGCCGGTGTTCAGCATGGAGATCAGCACATCTTTTTGTTGTGCCAGC > SRR4302540.1698354/1‑94 (MQ=60)
CTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCA < SRR4302540.8800612/94‑1 (MQ=60)
TTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT < SRR4302540.6150740/94‑1 (MQ=60)
TTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT > SRR4302540.4510632/1‑94 (MQ=60)
TTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT > SRR4302540.1844259/1‑94 (MQ=60)
TTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT > SRR4302540.2361248/1‑94 (MQ=60)
TTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT > SRR4302540.8613276/1‑94 (MQ=60)
TTCCCCTTCCGATTCAGCACCGACGACCTGTGGGGACGGTAATTTTCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT < SRR4302540.8019329/94‑1 (MQ=60)
CTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAT < SRR4302540.9490038/94‑1 (MQ=60)
TCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATA < SRR4302540.2894295/94‑1 (MQ=60)
CCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAG > SRR4302540.8228987/1‑94 (MQ=60)
CTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGC > SRR4302540.7556284/1‑94 (MQ=60)
CTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGC < SRR4302540.5740722/94‑1 (MQ=60)
CTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGC < SRR4302540.7542279/94‑1 (MQ=60)
TCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCG < SRR4302540.9996711/94‑1 (MQ=60)
TCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCG < SRR4302540.2632691/94‑1 (MQ=60)
TCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCG > SRR4302540.7811419/1‑94 (MQ=60)
TCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCG > SRR4302540.3770029/1‑94 (MQ=60)
CTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGA < SRR4302540.8783907/94‑1 (MQ=60)
CTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGA < SRR4302540.9530813/94‑1 (MQ=60)
TTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAA < SRR4302540.3049430/94‑1 (MQ=60)
TCGGATTCAGCACCGACGACCTGTGGGGGCGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAA > SRR4302540.6065209/1‑94 (MQ=60)
TCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAA > SRR4302540.3906731/1‑94 (MQ=60)
TCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAA < SRR4302540.7531566/94‑1 (MQ=60)
TCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAA < SRR4302540.9658687/94‑1 (MQ=60)
CGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAG < SRR4302540.6964658/94‑1 (MQ=60)
CGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAG < SRR4302540.7395888/94‑1 (MQ=60)
CGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAG < SRR4302540.4187597/94‑1 (MQ=60)
GGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGG > SRR4302540.8527540/1‑94 (MQ=60)
GATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGG > SRR4302540.6987063/1‑94 (MQ=60)
ATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGC < SRR4302540.10030259/94‑1 (MQ=60)
TTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCT > SRR4302540.4160865/1‑94 (MQ=60)
GCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAC < SRR4302540.6133332/94‑1 (MQ=60)
GCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAC < SRR4302540.8918747/94‑1 (MQ=60)
CACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACG < SRR4302540.3053608/94‑1 (MQ=60)
CACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACG > SRR4302540.2582642/1‑94 (MQ=60)
CACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACG < SRR4302540.5428056/94‑1 (MQ=60)
ACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGT > SRR4302540.597616/1‑94 (MQ=60)
ACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGT > SRR4302540.10159793/1‑94 (MQ=60)
ACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGT > SRR4302540.1332958/1‑94 (MQ=60)
CCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTT > SRR4302540.5529000/1‑94 (MQ=60)
CCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTT < SRR4302540.5619098/94‑1 (MQ=60)
CGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTG > SRR4302540.2035826/1‑94 (MQ=60)
GACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGC > SRR4302540.6255820/1‑94 (MQ=60)
GACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGC > SRR4302540.643232/1‑94 (MQ=60)
CGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTC < SRR4302540.8019338/94‑1 (MQ=60)
GACCTGTGGGGACGGTAATTTGCCGGTTTTGAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCG > SRR4302540.10144425/1‑94 (MQ=60)
GACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAATGGCTTCACGTTGCTCG > SRR4302540.9079641/1‑94 (MQ=60)
ACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGT < SRR4302540.681117/94‑1 (MQ=60)
ACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGT < SRR4302540.7790642/94‑1 (MQ=60)
CCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTC > SRR4302540.9255022/1‑94 (MQ=60)
CCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTC > SRR4302540.9163842/1‑94 (MQ=60)
CCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTC > SRR4302540.1047825/1‑94 (MQ=60)
CCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTC < SRR4302540.9717114/94‑1 (MQ=60)
CTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCT < SRR4302540.9278576/94‑1 (MQ=60)
CTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCT < SRR4302540.1177383/94‑1 (MQ=60)
TGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTT < SRR4302540.2446449/94‑1 (MQ=60)
TGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTT < SRR4302540.8452696/94‑1 (MQ=60)
TGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTT > SRR4302540.6417921/1‑94 (MQ=60)
GGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCA > SRR4302540.6341187/1‑94 (MQ=60)
GGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAT < SRR4302540.2689772/94‑1 (MQ=60)
GGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAT < SRR4302540.6893371/94‑1 (MQ=60)
GACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTT < SRR4302540.3567699/94‑1 (MQ=60)
GACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTT < SRR4302540.797234/94‑1 (MQ=60)
CGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGC > SRR4302540.5439323/1‑94 (MQ=60)
CGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGACAGCCATAGCGAAAGGGCTTCACTTTGCTCGTCTTCCATTTGC > SRR4302540.6932527/1‑94 (MQ=60)
GGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCA > SRR4302540.8184478/1‑94 (MQ=60)
GGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCA < SRR4302540.7935750/94‑1 (MQ=60)
TAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACT > SRR4302540.5774313/1‑94 (MQ=60)
AATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTG > SRR4302540.9068299/1‑94 (MQ=60)
TTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGA < SRR4302540.8705960/94‑1 (MQ=60)
TTGCCGGTTTTCAGAATGGCGCTCAGCCCATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAG < SRR4302540.1039140/94‑1 (MQ=60)
TTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAG < SRR4302540.4836402/94‑1 (MQ=60)
ggcgctgttcaaAATGGCGCTCAGCCCCTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAA < SRR4302540.2046999/82‑1 (MQ=60)
GCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAA < SRR4302540.6392359/94‑1 (MQ=60)
GCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAA < SRR4302540.2046731/94‑1 (MQ=60)
CCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAT < SRR4302540.680745/94‑1 (MQ=60)
CCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAT < SRR4302540.2728777/94‑1 (MQ=60)
CGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATT > SRR4302540.7930076/1‑94 (MQ=60)
GGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTGACGTTGCTCGTCTTCCATTTGCACTGGAGAATTT > SRR4302540.7265507/1‑94 (MQ=60)
GGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTT > SRR4302540.4991366/1‑94 (MQ=60)
GGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTT > SRR4302540.4265164/1‑94 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCCCTGGAGAATTTT > SRR4302540.9896063/1‑94 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTG > SRR4302540.2443024/1‑94 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTG < SRR4302540.1936677/94‑1 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTG > SRR4302540.9896062/1‑94 (MQ=60)
TTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGT < SRR4302540.8601150/94‑1 (MQ=60)
TTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGT > SRR4302540.4453749/1‑94 (MQ=60)
TTTTCAGAATGGCGCTCAGCACATCTTTTAGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGT < SRR4302540.3725369/94‑1 (MQ=60)
TTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTC > SRR4302540.10008489/1‑94 (MQ=60)
TTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTC < SRR4302540.7586206/94‑1 (MQ=60)
TTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCA < SRR4302540.7794169/94‑1 (MQ=60)
TTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCA < SRR4302540.4886338/94‑1 (MQ=60)
TCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAG < SRR4302540.6113548/94‑1 (MQ=60)
TCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAG > SRR4302540.2310199/1‑94 (MQ=60)
CAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGC < SRR4302540.6483310/94‑1 (MQ=60)
AGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC < SRR4302540.3727193/94‑1 (MQ=60)
AGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC > SRR4302540.7232708/1‑94 (MQ=60)
AGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC > SRR4302540.6937428/1‑94 (MQ=60)
AGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC > SRR4302540.3117047/1‑94 (MQ=60)
GAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCA < SRR4302540.3314779/94‑1 (MQ=60)
GAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCA > SRR4302540.2839302/1‑94 (MQ=60)
GAATGGCGATCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGAATTCACGTTACTCGACTACAATTTGCACTGGAGAATTTGTCAGCCA < SRR4302540.9078438/94‑1 (MQ=60)
AATGGCTCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAG < SRR4302540.7442706/94‑1 (MQ=60)
AATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAGGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAG > SRR4302540.5605079/1‑94 (MQ=60)
AATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAG > SRR4302540.5805141/1‑94 (MQ=60)
AATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAG < SRR4302540.5107973/94‑1 (MQ=60)
ATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGG > SRR4302540.9386857/1‑94 (MQ=60)
TGGCGCTCAGCACATCTTTTTGTTCTTCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGT < SRR4302540.2729216/94‑1 (MQ=60)
TGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGT < SRR4302540.1536981/94‑1 (MQ=60)
GGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTG < SRR4302540.8051158/94‑1 (MQ=60)
GCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGT > SRR4302540.6279760/1‑94 (MQ=60)
GCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCACTTGCACTGGAGAATTTGTCAGCCAGGTGT > SRR4302540.6279761/1‑94 (MQ=60)
CGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGACAGGTGTC > SRR4302540.333787/1‑94 (MQ=60)
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GCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTC > NC_000913/1928471‑1928657
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
