Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,998,039 |
A→G |
Y124H (TAC→CAC) |
fliY ← |
putative periplasmic binding transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,998,039 | 0 | A | G | 99.7%
| 922.8
/ ‑5.1
| 288 | Y124H (TAC→CAC) | fliY | putative periplasmic binding transport protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (164/123); total (164/124) |
| Fisher's exact test for biased strand distribution p-value = 4.31e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.05e-01 |
Only 100 of 300 total aligned reads displayed.
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACG > NC_000913/1997949‑1998128
|
cccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCg > 1:1131189/1‑93 (MQ=255)
cccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCg < 1:2238774/93‑1 (MQ=255)
cccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGCGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATATCAGAAATGGTGTGCg > 2:311818/1‑93 (MQ=255)
ccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCgg < 1:5048367/93‑1 (MQ=255)
cccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCggg > 1:8011914/1‑93 (MQ=255)
ccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCgggg > 2:3576974/1‑93 (MQ=255)
cACTTTTTTGCCTTTCATATCATCGGCTGGTTTAATGGTGTTTTCGTTACCTTTTTTCACTATCGCCTGAATACCATAAATGGTGCTCggggg > 2:8953238/1‑92 (MQ=255)
ttgttGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTgag < 2:9111781/90‑1 (MQ=255)
ttttGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTgaga > 1:4651441/1‑93 (MQ=255)
tttGCCGTTCAGATCATCGGTTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGaa < 1:4718286/93‑1 (MQ=255)
tGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAAt > 1:1765947/1‑93 (MQ=255)
tGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAAt < 2:2341160/93‑1 (MQ=255)
tGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAAt > 2:5051803/1‑93 (MQ=255)
ccTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCg < 2:2265489/93‑1 (MQ=255)
cTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGt > 2:2967906/1‑93 (MQ=255)
ttCAGATCATCGGGTTTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATTCCAGAAAGGTTGTGAGGGGTTGAGAAATCGTAt < 1:2816290/93‑1 (MQ=255)
ttCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAt > 2:1859577/1‑93 (MQ=255)
tCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAtt > 2:7240312/1‑93 (MQ=255)
gATCATCGGCTATTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAttttt > 2:5860449/1‑93 (MQ=255)
atcatcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAtttttt > 1:5488910/1‑93 (MQ=255)
tcatcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTc > 2:2109569/1‑93 (MQ=255)
tcatcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTc > 2:8294255/1‑93 (MQ=255)
tcatcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTc < 1:3354378/93‑1 (MQ=255)
tcatcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGGGCGGGGTTGAGAAATCGGAttttttt > 2:4072008/1‑92 (MQ=255)
catcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCt < 1:4405617/93‑1 (MQ=255)
catcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCt > 1:7274061/1‑93 (MQ=255)
atcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCtt < 1:4847128/93‑1 (MQ=255)
atcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCtt < 2:8573131/93‑1 (MQ=255)
gCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTgcgc > 1:5249988/1‑93 (MQ=255)
gCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTgcgc > 2:5361037/1‑93 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca > 2:9233484/1‑93 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca > 2:8138014/1‑93 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca > 2:6888286/1‑93 (MQ=255)
ttttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcat < 2:6612725/93‑1 (MQ=255)
tttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcatc > 2:6768640/1‑93 (MQ=255)
ttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcatca < 2:4664744/93‑1 (MQ=255)
tAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAg < 1:6670785/93‑1 (MQ=255)
tAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAg < 2:3034334/93‑1 (MQ=255)
tAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAg < 1:8543959/93‑1 (MQ=255)
aaTGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGa > 2:3368884/1‑93 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa > 2:969988/1‑93 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa < 1:8703999/93‑1 (MQ=255)
gTGCCTTCGTTACCTTTTTTCACCAGCGACTGAATACCAGAGATGATGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATg < 1:8921976/93‑1 (MQ=255)
gTGCCTTCGTTACCTTTTTTCACAAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATg < 2:5572742/93‑1 (MQ=255)
gCCTTCGTTACCTTTTTTCCCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGt < 1:9281192/93‑1 (MQ=255)
cTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGa > 1:1478938/1‑93 (MQ=255)
ttCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAc > 1:7588597/1‑93 (MQ=255)
ttCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAc > 1:9835862/1‑93 (MQ=255)
ttCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAc < 1:8417464/93‑1 (MQ=255)
cGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCt > 2:9939579/1‑93 (MQ=255)
cGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCt > 2:1704111/1‑93 (MQ=255)
gTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTg > 2:1081899/1‑93 (MQ=255)
gTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTg > 2:2423266/1‑93 (MQ=255)
gTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTg > 1:2577330/1‑93 (MQ=255)
ttACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGa < 1:8151056/93‑1 (MQ=255)
aCCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGTGCTCATCAGAAATGGTGACCTGAtt > 1:5752787/1‑93 (MQ=255)
ccTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGCGCGGGGTTGAGAAATCGTATTTTTTCTCGCGCTCATCAGAAATGGTGACCTGATTa > 1:7783252/1‑93 (MQ=255)
cTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTaa > 1:621110/1‑93 (MQ=255)
ttttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAt < 2:8496051/93‑1 (MQ=255)
ttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATca < 2:1023766/93‑1 (MQ=255)
tttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATcac > 1:7013152/1‑93 (MQ=255)
cACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATcaccac < 1:2386484/93‑1 (MQ=255)
cACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATcaccac > 2:6524591/1‑93 (MQ=255)
aCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACcaca > 2:3251873/1‑93 (MQ=255)
aCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACcaca < 1:6836798/93‑1 (MQ=255)
aCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACcaca > 1:115372/1‑93 (MQ=255)
ccAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAt > 2:3783576/1‑93 (MQ=255)
ccAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAt > 1:1892390/1‑93 (MQ=255)
cAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATc > 2:2601277/1‑93 (MQ=255)
cAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATc < 2:5660514/93‑1 (MQ=255)
aGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCa > 2:7429806/1‑93 (MQ=255)
aGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCa < 1:3648872/93‑1 (MQ=255)
gcgcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCaa > 2:7743221/1‑93 (MQ=255)
gcgcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCaa > 2:1228262/1‑93 (MQ=255)
gcgcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCaa < 1:3139251/93‑1 (MQ=255)
cgcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAAt < 1:3177773/93‑1 (MQ=255)
cgcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAAt > 1:7933791/1‑93 (MQ=255)
gcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATa < 2:9804941/93‑1 (MQ=255)
gcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATa > 1:6783204/1‑93 (MQ=255)
gcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATa < 2:4077778/93‑1 (MQ=255)
gcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATa < 2:7838748/93‑1 (MQ=255)
gcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATa < 2:8011913/93‑1 (MQ=255)
ccTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATAc > 1:5581336/1‑93 (MQ=255)
ccTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATAc < 2:4405524/93‑1 (MQ=255)
cTGAATACCAGAAATGGTGTGCTGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACg < 2:8629552/93‑1 (MQ=255)
aaTACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATCCGttt < 2:6228706/93‑1 (MQ=255)
aaTACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGttt < 1:9201973/93‑1 (MQ=255)
aaTACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGttt < 2:3923792/93‑1 (MQ=255)
aaTACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACAACATCAATACGttt > 1:2881361/1‑93 (MQ=255)
tACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTag > 1:64534/1‑93 (MQ=255)
tACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTag < 1:1640770/93‑1 (MQ=255)
tACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGATGACCTGATTAATCACCACATCAATACGTTTag > 1:9726344/1‑93 (MQ=255)
aCCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTaga < 2:3086177/93‑1 (MQ=255)
ccAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTagag < 2:1350469/93‑1 (MQ=255)
aGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTc > 1:10029061/1‑93 (MQ=255)
aaaTGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCa > 1:1407793/1‑93 (MQ=255)
aaaTGGTGTGCGGGGTCGAGAAATCGTATTTGTTCTTGCTCTCATCAGAAATGGTGACCTGATTAAGCACCATATCAATACGTTTAGAGTCCa < 2:4898850/93‑1 (MQ=255)
ggTGTGCAGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGa < 1:6018741/93‑1 (MQ=255)
gtgtGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAc > 1:6868054/1‑93 (MQ=255)
gtgtGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAc > 2:4519523/1‑93 (MQ=255)
|
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACG > NC_000913/1997949‑1998128
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGCC > NC_000913/1997946‑1998130
|
CGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTG < SRR4302540.5422136/94‑1 (MQ=60)
CGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTG > SRR4302540.5422415/1‑94 (MQ=60)
CGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTG < SRR4302540.1196142/94‑1 (MQ=60)
ACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCG > SRR4302540.1142962/1‑94 (MQ=60)
ACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCG > SRR4302540.7948037/1‑94 (MQ=60)
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGG > SRR4302540.7467948/1‑94 (MQ=60)
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGG < SRR4302540.2262845/94‑1 (MQ=60)
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGG > SRR4302540.2237940/1‑94 (MQ=60)
CCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGG < SRR4302540.5102959/94‑1 (MQ=60)
CCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGG > SRR4302540.4725727/1‑94 (MQ=60)
CCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGG > SRR4302540.8105109/1‑94 (MQ=60)
CCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGG < SRR4302540.2789293/94‑1 (MQ=60)
CACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTT < SRR4302540.2542316/94‑1 (MQ=60)
ACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTG > SRR4302540.3191749/1‑94 (MQ=60)
ACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTG > SRR4302540.6971956/1‑94 (MQ=60)
TTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGA > SRR4302540.4701218/1‑94 (MQ=60)
TTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAA > SRR4302540.6746934/1‑94 (MQ=60)
TTTGCCGTTCAGATCATCGGTTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAA < SRR4302540.4768690/94‑1 (MQ=60)
TTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAAT > SRR4302540.5582796/1‑94 (MQ=60)
TTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAAT > SRR4302540.1785099/1‑94 (MQ=60)
TTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAAT > SRR4302540.1785100/1‑94 (MQ=60)
TGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATC > SRR4302540.2382670/1‑94 (MQ=60)
TGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGACTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATC < SRR4302540.1833770/94‑1 (MQ=60)
CCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGT < SRR4302540.1615755/94‑1 (MQ=60)
TTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAT < SRR4302540.2881100/94‑1 (MQ=60)
TTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAT < SRR4302540.9335958/94‑1 (MQ=60)
TTCAGATCATCGGGTTTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATTCCAGAAAGGTTGTGAGGGGTTGAGAAATCGTATT < SRR4302540.2846715/94‑1 (MQ=60)
TTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATT < SRR4302540.5598898/94‑1 (MQ=60)
TTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATT < SRR4302540.2846717/94‑1 (MQ=60)
AGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTT > SRR4302540.8073152/1‑94 (MQ=60)
GATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTT > SRR4302540.5549331/1‑94 (MQ=60)
TCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCGCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCT < SRR4302540.5080454/94‑1 (MQ=60)
TCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCT < SRR4302540.3391144/94‑1 (MQ=60)
TCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCT > SRR4302540.7355230/1‑94 (MQ=60)
TCAGCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCT < SRR4302540.5772126/94‑1 (MQ=60)
CATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTT < SRR4302540.5082373/94‑1 (MQ=60)
CATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTT < SRR4302540.4453381/94‑1 (MQ=60)
ATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTG > SRR4302540.7236873/1‑94 (MQ=60)
ATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTG < SRR4302540.4899057/94‑1 (MQ=60)
ATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTG > SRR4302540.6727174/1‑94 (MQ=60)
CGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCG > SRR4302540.1288863/1‑94 (MQ=60)
GGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGC > SRR4302540.5307251/1‑94 (MQ=60)
CTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTC > SRR4302540.9946856/1‑94 (MQ=60)
TGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCA < SRR4302540.7985616/94‑1 (MQ=60)
TTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATC > SRR4302540.3244970/1‑94 (MQ=60)
TTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATC < SRR4302540.3079163/94‑1 (MQ=60)
TTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAG > SRR4302540.9761092/1‑94 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA < SRR4302540.8643226/94‑1 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA < SRR4302540.6744493/94‑1 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA < SRR4302540.3374587/94‑1 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA > SRR4302540.9361816/1‑94 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA > SRR4302540.8208914/1‑94 (MQ=60)
AATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAGATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAA > SRR4302540.8416487/1‑94 (MQ=60)
AATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAA < SRR4302540.1575039/94‑1 (MQ=60)
AATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAA > SRR4302540.2590939/1‑94 (MQ=60)
ATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAA > SRR4302540.6047150/1‑94 (MQ=60)
TGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAAT < SRR4302540.9682225/94‑1 (MQ=60)
TGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAAT < SRR4302540.8805033/94‑1 (MQ=60)
GGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATG > SRR4302540.68677/1‑94 (MQ=60)
GTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGG < SRR4302540.6104271/94‑1 (MQ=60)
GTGCCTTCGTTACCTTTTTTCACCAGCGACTGAATACCAGAGATGATGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGG < SRR4302540.9025432/94‑1 (MQ=60)
GCCTTCGTTACCTTTTTTCCCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTG < SRR4302540.9392124/94‑1 (MQ=60)
GCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTG > SRR4302540.5791531/1‑94 (MQ=60)
CCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGA > SRR4302540.1495125/1‑94 (MQ=60)
CCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGA > SRR4302540.8945076/1‑94 (MQ=60)
CCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGA < SRR4302540.687494/94‑1 (MQ=60)
CCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGA > SRR4302540.1495131/1‑94 (MQ=60)
CTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAC > SRR4302540.7673827/1‑94 (MQ=60)
CTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAC > SRR4302540.9950879/1‑94 (MQ=60)
CTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGAGAC > SRR4302540.9854529/1‑94 (MQ=60)
TTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACC > SRR4302540.6758822/1‑94 (MQ=60)
TTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACC < SRR4302540.9246312/94‑1 (MQ=60)
TTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACC > SRR4302540.1471524/1‑94 (MQ=60)
TTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACC < SRR4302540.8515171/94‑1 (MQ=60)
CGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTG > SRR4302540.265550/1‑94 (MQ=60)
CGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTG > SRR4302540.2605114/1‑94 (MQ=60)
CGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTG > SRR4302540.2229866/1‑94 (MQ=60)
GTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGACATGGTGACCTGA > SRR4302540.4747430/1‑94 (MQ=60)
TTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGAT < SRR4302540.8245681/94‑1 (MQ=60)
TACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGTGCTCATCAGAAATGGTGACCTGATT > SRR4302540.5816280/1‑94 (MQ=60)
TACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATT > SRR4302540.8437711/1‑94 (MQ=60)
TCCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTA < SRR4302540.6928619/94‑1 (MQ=60)
ACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGCGCGGGGTTGAGAAATCGTATTTTTTCTCGCGCTCATCAGAAATGGTGACCTGATTA > SRR4302540.7874227/1‑94 (MQ=60)
CCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAA > SRR4302540.627718/1‑94 (MQ=60)
CTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAT < SRR4302540.5281037/94‑1 (MQ=60)
CTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAT > SRR4302540.112281/1‑94 (MQ=60)
CTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAT < SRR4302540.5453044/94‑1 (MQ=60)
TTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATC < SRR4302540.7789643/94‑1 (MQ=60)
TTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATC > SRR4302540.1188340/1‑94 (MQ=60)
TTTTTCACCAGCGGCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTGTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATac > SRR4302540.1604003/1‑92 (MQ=60)
TTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCA < SRR4302540.8788790/94‑1 (MQ=60)
TTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCA < SRR4302540.8788791/94‑1 (MQ=60)
TTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCAC > SRR4302540.7280733/1‑94 (MQ=60)
TTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCAC > SRR4302540.7091014/1‑94 (MQ=60)
TTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCAC > SRR4302540.5939285/1‑94 (MQ=60)
CACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACA < SRR4302540.2412204/94‑1 (MQ=60)
CACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACA > SRR4302540.116604/1‑94 (MQ=60)
actcGCGCCTGAATATCAGAAATGGTCTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGCCATGATTAATCACCACAT < SRR4302540.1144955/90‑1 (MQ=60)
ACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAT > SRR4302540.1913105/1‑94 (MQ=60)
ACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAT < SRR4302540.4562710/94‑1 (MQ=60)
ACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAT < SRR4302540.6912521/94‑1 (MQ=60)
ACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAT < SRR4302540.1144956/94‑1 (MQ=60)
ACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACAT > SRR4302540.1067199/1‑94 (MQ=60)
CAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCA < SRR4302540.8842352/94‑1 (MQ=60)
CAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCA > SRR4302540.230696/1‑94 (MQ=60)
CAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCA > SRR4302540.6474085/1‑94 (MQ=60)
AGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAA > SRR4302540.8089030/1‑94 (MQ=60)
AGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAA < SRR4302540.3688842/94‑1 (MQ=60)
GCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAAT < SRR4302540.3173487/94‑1 (MQ=60)
GCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAAT > SRR4302540.8026263/1‑94 (MQ=60)
CGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATA > SRR4302540.6858212/1‑94 (MQ=60)
CGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATA < SRR4302540.3212312/94‑1 (MQ=60)
GCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATAC < SRR4302540.3598269/94‑1 (MQ=60)
GCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATAC > SRR4302540.4632097/1‑94 (MQ=60)
GCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATAC > SRR4302540.5642774/1‑94 (MQ=60)
GCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATAC > SRR4302540.3725225/1‑94 (MQ=60)
CTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGT > SRR4302540.6647483/1‑94 (MQ=60)
GAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACAACATCAATACGTTT > SRR4302540.2912712/1‑94 (MQ=60)
AATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTA < SRR4302540.7015152/94‑1 (MQ=60)
AATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTA < SRR4302540.9312380/94‑1 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAG > SRR4302540.6114923/1‑94 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAG > SRR4302540.5269894/1‑94 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAG > SRR4302540.65183/1‑94 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAG < SRR4302540.816660/94‑1 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAG > SRR4302540.2933841/1‑94 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGATGACCTGATTAATCACCACATCAATACGTTTAG > SRR4302540.9840581/1‑94 (MQ=60)
TACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGA < SRR4302540.1658702/94‑1 (MQ=60)
ACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAG < SRR4302540.1686141/94‑1 (MQ=60)
ACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAG > SRR4302540.8736800/1‑94 (MQ=60)
CCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGT < SRR4302540.8548566/94‑1 (MQ=60)
CCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGT < SRR4302540.3206423/94‑1 (MQ=60)
CAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTC > SRR4302540.10145736/1‑94 (MQ=60)
CAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTC > SRR4302540.4819412/1‑94 (MQ=60)
CAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTC < SRR4302540.4815653/94‑1 (MQ=60)
AGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCC < SRR4302540.1746963/94‑1 (MQ=60)
AGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCC > SRR4302540.3671965/1‑94 (MQ=60)
GAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCA > SRR4302540.1422950/1‑94 (MQ=60)
AAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAG > SRR4302540.5404316/1‑94 (MQ=60)
AAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAG < SRR4302540.7733005/94‑1 (MQ=60)
AATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGC > SRR4302540.9037942/1‑94 (MQ=60)
AATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGC > SRR4302540.6430678/1‑94 (MQ=60)
GGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAC > SRR4302540.6944188/1‑94 (MQ=60)
GGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAC > SRR4302540.6944189/1‑94 (MQ=60)
GGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAC > SRR4302540.7629615/1‑94 (MQ=60)
GGTGTGCAGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAC < SRR4302540.6085497/94‑1 (MQ=60)
GTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACG > SRR4302540.4376500/1‑94 (MQ=60)
GTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACG > SRR4302540.10114049/1‑94 (MQ=60)
TGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGC > SRR4302540.4632642/1‑94 (MQ=60)
GTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGCC > SRR4302540.1548571/1‑94 (MQ=60)
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CGACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGCC > NC_000913/1997946‑1998130
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
