Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,013,946 |
G→A |
Q26Q (CAG→CAA) |
fliH → |
FliH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,013,946 | 0 | G | A | 100.0%
| 697.3
/ NA
| 189 | Q26Q (CAG→CAA) | fliH | FliH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (91/98); total (91/98) |
Only 100 of 196 total aligned reads displayed.
GCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > NC_000913/2013857‑2014035
|
gCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCa > 1:40735/1‑93 (MQ=255)
cGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCag < 2:7383633/93‑1 (MQ=255)
aTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGtt < 1:421097/93‑1 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt > 2:1793276/1‑93 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt > 1:8345539/1‑93 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt < 1:5620587/93‑1 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt > 1:4976528/1‑93 (MQ=255)
ggTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtg < 1:3415330/93‑1 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt > 2:7859709/1‑93 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt > 1:5500515/1‑93 (MQ=255)
tAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgtg > 2:6364062/1‑93 (MQ=255)
ttGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGccc > 2:8738491/1‑93 (MQ=255)
tGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCa < 1:6138342/93‑1 (MQ=255)
tGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCa < 2:1619075/93‑1 (MQ=255)
tGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCa < 1:3902711/93‑1 (MQ=255)
ggCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAt < 2:5637933/93‑1 (MQ=255)
ggCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAt > 1:5486072/1‑93 (MQ=255)
ggCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAt > 2:2850760/1‑93 (MQ=255)
gCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATa < 2:8507624/93‑1 (MQ=255)
cAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAg > 1:3520375/1‑93 (MQ=255)
cAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAg < 2:4935580/93‑1 (MQ=255)
aGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGt < 2:9626017/93‑1 (MQ=255)
gcggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTc > 2:9362980/1‑93 (MQ=255)
cggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCg < 1:783427/93‑1 (MQ=255)
ggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGa < 1:3207200/93‑1 (MQ=255)
cgAGGATACCTATGTCTGCTAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCCGAGTTTGTGCCCATAGTCGAGc > 2:8247930/1‑93 (MQ=255)
cgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGc > 1:3166197/1‑93 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg < 2:7241691/93‑1 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg > 2:6673761/1‑93 (MQ=255)
ggATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCgg > 2:6539684/1‑93 (MQ=255)
aCCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaaga < 1:513315/93‑1 (MQ=255)
aCCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaaga < 1:9846904/93‑1 (MQ=255)
ccTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaagaa > 1:953966/1‑93 (MQ=255)
cTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGaaa > 1:4196174/1‑93 (MQ=255)
cTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGaaa > 2:7676329/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 1:5782871/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 1:4154897/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 1:3286618/1‑93 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca < 1:6754268/93‑1 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca > 1:8354614/1‑93 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca > 2:2259231/1‑93 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca < 2:4702949/93‑1 (MQ=255)
gTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcat > 2:9858554/1‑93 (MQ=255)
gTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcat < 1:1710142/93‑1 (MQ=255)
tCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatc > 2:712225/1‑93 (MQ=255)
cTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatca < 1:7120393/93‑1 (MQ=255)
cTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatca < 2:3321409/93‑1 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatcat < 1:1034452/93‑1 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatcat < 2:4568767/93‑1 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatcat > 2:4626743/1‑93 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt < 2:3785582/93‑1 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt < 2:4089313/93‑1 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt < 1:9971288/93‑1 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt > 2:5367425/1‑93 (MQ=255)
tAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGa < 2:8238724/93‑1 (MQ=255)
tAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGa > 2:491445/1‑93 (MQ=255)
tAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGa > 2:9923761/1‑93 (MQ=255)
aaTCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGaa < 1:4778143/93‑1 (MQ=255)
aaTCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGaa > 1:7603407/1‑93 (MQ=255)
aTCTGCCGTGGAAAACCTGGACGCCGGACGCTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAag < 2:1083177/93‑1 (MQ=255)
aTCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAag < 2:4167662/93‑1 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 1:5805240/93‑1 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 1:9855986/93‑1 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 2:9292592/93‑1 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 1:9096341/93‑1 (MQ=255)
tGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAgg > 1:3091012/1‑93 (MQ=255)
ccGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCt < 2:1770031/93‑1 (MQ=255)
ccGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCt < 1:8548281/93‑1 (MQ=255)
tGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGaa < 1:9027318/93‑1 (MQ=255)
tGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGaa > 1:6261561/1‑93 (MQ=255)
gAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAcc > 1:1863434/1‑93 (MQ=255)
aaaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAccc > 1:3100989/1‑93 (MQ=255)
aaaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAccc > 2:48409/1‑93 (MQ=255)
aaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAg < 1:1362428/93‑1 (MQ=255)
aCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGc < 2:6455490/93‑1 (MQ=255)
ccgggACGCCGGACGATCGCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGcc < 1:9455842/90‑1 (MQ=255)
cTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCt < 1:2026679/93‑1 (MQ=255)
ggACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTg < 2:3035362/93‑1 (MQ=255)
gccGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGa < 2:9177703/91‑1 (MQ=255)
cGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagc < 2:3531058/93‑1 (MQ=255)
cGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagcagc < 1:7976324/93‑1 (MQ=255)
cGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagcagc > 1:7188591/1‑93 (MQ=255)
cGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagcagc < 2:2536967/93‑1 (MQ=255)
ggACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAgcagca > 2:5059182/1‑93 (MQ=255)
ggACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAgcagca > 1:1168538/1‑93 (MQ=255)
gACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCaa < 1:2845744/93‑1 (MQ=255)
gACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCaa > 2:5176194/1‑93 (MQ=255)
cGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACt < 2:223903/93‑1 (MQ=255)
gATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTg > 1:8823289/1‑93 (MQ=255)
aTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTgg > 1:6013350/1‑93 (MQ=255)
aTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTgg > 1:2507564/1‑93 (MQ=255)
tctcGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGgc > 2:4277336/1‑93 (MQ=255)
tctcGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGgc < 1:9228080/93‑1 (MQ=255)
gcgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCac > 1:1517322/1‑92 (MQ=255)
gcgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCaa > 2:3942242/1‑93 (MQ=255)
cgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAc > 1:6626852/1‑93 (MQ=255)
gcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACt > 2:2733835/1‑93 (MQ=255)
ccaccaCAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTg > 1:868685/1‑93 (MQ=255)
acaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAt > 1:1991509/1‑93 (MQ=255)
acaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAt > 2:1181342/1‑93 (MQ=255)
|
GCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > NC_000913/2013857‑2014035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG > NC_000913/2013854‑2014039
|
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG < SRR4302540.2885232/94‑1 (MQ=60)
TGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGC < SRR4302540.6796683/94‑1 (MQ=60)
GGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCA > SRR4302540.41153/1‑94 (MQ=60)
CGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGG > SRR4302540.5044522/1‑94 (MQ=60)
ATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTT < SRR4302540.9925662/94‑1 (MQ=60)
ATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTT < SRR4302540.425528/94‑1 (MQ=60)
ATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTT > SRR4302540.5030388/1‑94 (MQ=60)
ATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTT > SRR4302540.6049002/1‑94 (MQ=60)
ATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTT > SRR4302540.8442402/1‑94 (MQ=60)
TGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTG < SRR4302540.3273337/94‑1 (MQ=60)
TGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTG < SRR4302540.5682428/94‑1 (MQ=60)
GGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGT < SRR4302540.3452503/94‑1 (MQ=60)
GGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGT < SRR4302540.1411721/94‑1 (MQ=60)
GGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGT > SRR4302540.5561085/1‑94 (MQ=60)
NNNTTGGNAGCGGCGAGNATANCNATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGC < SRR4302540.8024502/94‑1 (MQ=60)
NAATTGGNAGCGGCGAGGATANCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGC < SRR4302540.8024503/94‑1 (MQ=60)
ATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCC < SRR4302540.8924729/94‑1 (MQ=60)
TGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAT > SRR4302540.5546463/1‑94 (MQ=60)
TGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAT < SRR4302540.3945043/94‑1 (MQ=60)
TGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAT < SRR4302540.8950138/94‑1 (MQ=60)
TGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAT < SRR4302540.6206708/94‑1 (MQ=60)
GCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAG > SRR4302540.3558736/1‑94 (MQ=60)
CAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGT < SRR4302540.6094329/94‑1 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC > SRR4302540.8451670/1‑94 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC < SRR4302540.8445269/94‑1 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC > SRR4302540.5786019/1‑94 (MQ=60)
CGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGA < SRR4302540.791760/94‑1 (MQ=60)
GGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAG < SRR4302540.10111051/94‑1 (MQ=60)
GGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAG < SRR4302540.3242027/94‑1 (MQ=60)
GCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGC > SRR4302540.3200626/1‑94 (MQ=60)
CGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCC < SRR4302540.350087/94‑1 (MQ=60)
AGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGG > SRR4302540.7823654/1‑94 (MQ=60)
GATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAA < SRR4302540.3171130/94‑1 (MQ=60)
ACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAA < SRR4302540.9962010/94‑1 (MQ=60)
ACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAA > SRR4302540.963863/1‑94 (MQ=60)
ACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAA > SRR4302540.2035519/1‑94 (MQ=60)
ACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAA < SRR4302540.518826/94‑1 (MQ=60)
ACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAA > SRR4302540.2608310/1‑94 (MQ=60)
CCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAA > SRR4302540.4718053/1‑94 (MQ=60)
CCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAA > SRR4302540.4241820/1‑94 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC > SRR4302540.3322560/1‑94 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC > SRR4302540.5846751/1‑94 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC > SRR4302540.4199907/1‑94 (MQ=60)
TATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACC < SRR4302540.5648393/94‑1 (MQ=60)
ATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCA > SRR4302540.8451580/1‑94 (MQ=60)
ATGTCTGATAAGCTGCGGTGGAAAGCGTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCA < SRR4302540.4249099/94‑1 (MQ=60)
TGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCAT < SRR4302540.6828897/94‑1 (MQ=60)
TGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCAT < SRR4302540.91307/94‑1 (MQ=60)
GTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATC < SRR4302540.1728618/94‑1 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAT < SRR4302540.299258/94‑1 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAT < SRR4302540.7199680/94‑1 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAT > SRR4302540.2323188/1‑94 (MQ=60)
TGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT < SRR4302540.1044970/94‑1 (MQ=60)
GATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTG < SRR4302540.10087602/94‑1 (MQ=60)
ATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGA > SRR4302540.6522757/1‑94 (MQ=60)
ATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGA > SRR4302540.1895651/1‑94 (MQ=60)
TAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAA > SRR4302540.7688840/1‑94 (MQ=60)
TAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAA < SRR4302540.1198323/94‑1 (MQ=60)
AATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAG < SRR4302540.4829194/94‑1 (MQ=60)
ATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGA < SRR4302540.8164427/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302540.9509850/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302540.5869385/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302540.5869387/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302540.9971171/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302540.9205636/94‑1 (MQ=60)
CTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGG > SRR4302540.3124919/1‑94 (MQ=60)
TGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGC > SRR4302540.9985598/1‑94 (MQ=60)
CCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTG > SRR4302540.5518110/1‑94 (MQ=60)
CCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTG < SRR4302540.8647584/94‑1 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA < SRR4302540.6295568/94‑1 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCACGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA > SRR4302540.4894615/1‑94 (MQ=60)
GTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAA > SRR4302540.4149920/1‑94 (MQ=60)
GTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAA > SRR4302540.6331222/1‑94 (MQ=60)
TGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAC < SRR4302540.9135642/94‑1 (MQ=60)
GGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACC > SRR4302540.1883860/1‑94 (MQ=60)
GAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCC > SRR4302540.3134954/1‑94 (MQ=60)
AACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGC < SRR4302540.1376823/94‑1 (MQ=60)
ACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCC < SRR4302540.7096884/94‑1 (MQ=60)
CCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCT > SRR4302540.7263197/1‑94 (MQ=60)
CCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCT < SRR4302540.9568060/94‑1 (MQ=60)
CCGGGACGCCGGACGATCGCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCT < SRR4302540.9568059/94‑1 (MQ=60)
CTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTT < SRR4302540.2048568/94‑1 (MQ=60)
CGCCGGACGATCTCGCGCCACCGCAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCA > SRR4302540.7413432/1‑94 (MQ=60)
GCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAG > SRR4302540.3395515/1‑94 (MQ=60)
CCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGC > SRR4302540.7268723/1‑94 (MQ=60)
CGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCA < SRR4302540.8069245/94‑1 (MQ=60)
CGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCA > SRR4302540.6815410/1‑94 (MQ=60)
CGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCA > SRR4302540.1180642/1‑94 (MQ=60)
GGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAA > SRR4302540.3241868/1‑94 (MQ=60)
GACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAAC < SRR4302540.3664537/94‑1 (MQ=60)
GACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAAC < SRR4302540.2876544/94‑1 (MQ=60)
GACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAAC < SRR4302540.3129673/94‑1 (MQ=60)
ACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACT < SRR4302540.1812764/94‑1 (MQ=60)
CGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTG > SRR4302540.8925316/1‑94 (MQ=60)
GATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGG > SRR4302540.2534646/1‑94 (MQ=60)
GATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGG > SRR4302540.6080035/1‑94 (MQ=60)
TCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCG < SRR4302540.9338713/94‑1 (MQ=60)
CGCGCCACCACAAGCAGAGTTTGTGCCCATAGTGGAGCCGGAAGAAACCATCATTGCAGAGGCTGAAGCCAGCCTTGAGCAGaacttggctaac > SRR4302540.1534106/1‑82 (MQ=60)
CGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAC > SRR4302540.1534107/1‑94 (MQ=60)
GCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAC > SRR4302540.6700214/1‑94 (MQ=60)
CGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACT > SRR4302540.9226615/1‑94 (MQ=60)
GCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTG > SRR4302540.877902/1‑94 (MQ=60)
ACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAA > SRR4302540.4072511/1‑94 (MQ=60)
CACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT < SRR4302540.8766829/94‑1 (MQ=60)
CACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT < SRR4302540.1609378/94‑1 (MQ=60)
CACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT < SRR4302540.4213158/94‑1 (MQ=60)
CACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > SRR4302540.2013090/1‑94 (MQ=60)
AGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG < SRR4302540.6004102/94‑1 (MQ=60)
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CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG > NC_000913/2013854‑2014039
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
