Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,204,258 |
T→C |
W182R (TGG→CGG) |
yehM → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,204,258 | 0 | T | C | 100.0%
| 569.9
/ NA
| 179 | W182R (TGG→CGG) | yehM | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (80/99); total (80/99) |
Only 100 of 222 total aligned reads displayed.
CCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC > NC_000913/2204169‑2204347
|
ccTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcgga < 2:8632893/93‑1 (MQ=255)
ccTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcgga > 1:531956/1‑93 (MQ=255)
ccTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcgga > 1:772818/1‑93 (MQ=255)
ctctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggat > 2:501209/1‑93 (MQ=255)
tctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggatt > 1:9979416/1‑93 (MQ=255)
tctGCGCTGGCGCACTATTTTGCCCAACGGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggatt < 2:7674648/93‑1 (MQ=255)
ctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattg > 2:3545858/1‑93 (MQ=255)
gcgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattgga < 1:7365597/93‑1 (MQ=255)
cgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattggat < 2:9008795/93‑1 (MQ=255)
cgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattggat < 2:7115223/93‑1 (MQ=255)
cgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattggat < 2:8244955/93‑1 (MQ=255)
gcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg < 1:1603352/93‑1 (MQ=255)
gcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg > 2:5804957/1‑93 (MQ=255)
cTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATgg > 2:8774635/1‑93 (MQ=255)
ggCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGc < 2:3158977/93‑1 (MQ=255)
cgcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGa < 1:9530178/93‑1 (MQ=255)
cACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATg > 2:9290819/1‑93 (MQ=255)
aCTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgc < 1:9425223/93‑1 (MQ=255)
cTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgca < 1:3127353/93‑1 (MQ=255)
tATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcag < 1:3342537/93‑1 (MQ=255)
tATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcag < 1:4744860/93‑1 (MQ=255)
aTTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagc < 1:1261240/93‑1 (MQ=255)
ttttGCCCCATTGCGGGGGGACGCCTCGGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagca < 2:395719/93‑1 (MQ=255)
ttttGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagca < 2:395717/93‑1 (MQ=255)
ttttGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagca > 1:5825668/1‑93 (MQ=255)
tGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCaaaa < 1:5086644/93‑1 (MQ=255)
tGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCaaaa > 2:3411170/1‑93 (MQ=255)
cccAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaata > 2:266410/1‑93 (MQ=255)
ccAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataa > 1:8364335/1‑93 (MQ=255)
cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat < 1:3797395/93‑1 (MQ=255)
cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat > 1:8572715/1‑93 (MQ=255)
cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat < 2:5608589/93‑1 (MQ=255)
aaCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATg > 1:3332744/1‑93 (MQ=255)
aaCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATg > 1:1519783/1‑93 (MQ=255)
aaCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATg > 1:9347422/1‑93 (MQ=255)
aCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATgg < 1:9845913/93‑1 (MQ=255)
cTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGc > 1:5217793/1‑93 (MQ=255)
cTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGc > 1:8013198/1‑93 (MQ=255)
ggggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACg > 1:7046003/1‑93 (MQ=255)
ggggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACg < 2:3881238/93‑1 (MQ=255)
ggggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACg > 1:599603/1‑93 (MQ=255)
gggCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgt > 1:9872337/1‑93 (MQ=255)
aCGCCTCCGGCGATGCTCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAg < 1:6718115/93‑1 (MQ=255)
aCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCTATGCAGCAAAATAATGACGACGGGTTAg > 1:8732930/1‑93 (MQ=255)
aCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAg < 2:7799228/93‑1 (MQ=255)
aCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGACTGGATGGGCGATGCAGAAAAAAAATGGGGACGGGTTAg > 1:2778901/1‑93 (MQ=255)
ccTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTg > 2:6138217/1‑93 (MQ=255)
ccTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTg < 2:1258761/93‑1 (MQ=255)
cTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGt < 2:899287/93‑1 (MQ=255)
tgcGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTc < 2:4800970/91‑1 (MQ=255)
tCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTc < 1:4043373/93‑1 (MQ=255)
tCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTc < 2:6464948/93‑1 (MQ=255)
tCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGGTGTc > 2:4548594/1‑93 (MQ=255)
tCCGGCGATGCCCTCAATCGTCACCGCGAAGCCGTTATGGCCAGCCGGATTGGATGGTCGATGCATCAAAATAATGGCGACGGGCTAGTGGTc > 2:6749672/1‑93 (MQ=255)
ccGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCt < 2:6888552/93‑1 (MQ=255)
ccGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCt < 2:3645441/93‑1 (MQ=255)
cGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTg < 1:8865242/93‑1 (MQ=255)
ggCGATGCGCTCAATCGTCAGCGCGACGCCTTTATGGCCCGCCGGATGGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGc < 2:5737381/93‑1 (MQ=255)
ggCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGc < 1:6175267/93‑1 (MQ=255)
gCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCg < 2:5571338/93‑1 (MQ=255)
gCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCg < 1:6863198/93‑1 (MQ=255)
gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCggg > 2:279533/1‑92 (MQ=255)
tGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtgg > 2:6493894/1‑93 (MQ=255)
tGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtgg > 2:5308758/1‑93 (MQ=255)
gcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctg < 2:2905805/93‑1 (MQ=255)
tCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctggc > 2:7858578/1‑93 (MQ=255)
cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa > 2:933969/1‑93 (MQ=255)
cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa < 1:2434781/93‑1 (MQ=255)
cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa < 2:5485554/93‑1 (MQ=255)
cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATAGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa > 2:9774827/1‑93 (MQ=255)
aaTCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCAc < 2:4300691/93‑1 (MQ=255)
aTCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACg < 1:3575857/93‑1 (MQ=255)
tCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGc > 2:2613880/1‑93 (MQ=255)
tCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGc < 2:1990430/93‑1 (MQ=255)
cGTCAGCGCGAAGCCTTTATGGGCCGCCGGATTGGATGGGCGATGCAGCAAAATCATGGCGCCGAGTTGGTTGTCTGCGGTGGCTGGCACGCt > 2:4692959/1‑93 (MQ=255)
gTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTc > 2:4451830/1‑93 (MQ=255)
gTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTc > 1:3269184/1‑93 (MQ=255)
aGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCgg < 2:908834/93‑1 (MQ=255)
aGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCgg < 1:4181461/93‑1 (MQ=255)
gcgcGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGc < 2:8052843/93‑1 (MQ=255)
gcgcGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCCCCGGc > 2:7358849/1‑93 (MQ=255)
gcgcGAAGCCTTTATGGCCCGCCGGAGTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGc < 2:2033293/93‑1 (MQ=255)
gcgcCAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGc < 1:3228758/93‑1 (MQ=255)
cgcgAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGcc > 1:1127794/1‑92 (MQ=255)
cgcgAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCa < 1:5585259/93‑1 (MQ=255)
cgAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACt < 2:7176993/93‑1 (MQ=255)
cgAACCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACt < 2:7279894/93‑1 (MQ=255)
caaGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTg < 1:293923/92‑1 (MQ=255)
ccTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCaa > 2:6681267/1‑93 (MQ=255)
cTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCaaa > 1:7604970/1‑93 (MQ=255)
cTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCaaa > 1:4421131/1‑93 (MQ=255)
cTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCaaa > 2:4089530/1‑93 (MQ=255)
cTTTATGGCCCGCCGGAGTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCaaa < 2:114017/93‑1 (MQ=255)
ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa < 2:3824248/93‑1 (MQ=255)
ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa < 1:2642711/93‑1 (MQ=255)
tATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAt < 2:3503459/93‑1 (MQ=255)
aTGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAtg < 1:6253896/93‑1 (MQ=255)
tGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAtgt > 1:1043520/1‑93 (MQ=255)
gCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTgg < 1:9534628/93‑1 (MQ=255)
cGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgcgc < 2:5901722/93‑1 (MQ=255)
|
CCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC > NC_000913/2204169‑2204347
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT > NC_000913/2204165‑2204351
|
TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGCAGCCTTTATGGCCCGCC > SRR4302540.10142466/1‑94 (MQ=60)
TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCC > SRR4302540.10142467/1‑94 (MQ=60)
CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGA > SRR4302540.537706/1‑94 (MQ=60)
CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGA > SRR4302540.781037/1‑94 (MQ=60)
CCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGAT < SRR4302540.6982399/94‑1 (MQ=60)
CTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATT > SRR4302540.10095787/1‑94 (MQ=60)
CTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAACCCTTTATGGCCCGCCGGATT < SRR4302540.9857246/94‑1 (MQ=60)
CTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGG > SRR4302540.9970121/1‑94 (MQ=60)
CTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGG > SRR4302540.3375678/1‑94 (MQ=60)
CTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGG > SRR4302540.3288234/1‑94 (MQ=60)
tcgtgtgaccccttTTTTGCCCAACTGCGGGGCGACGCCGCCGGCGAGGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGAT < SRR4302540.2511229/80‑1 (MQ=60)
GCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGAT < SRR4302540.7447719/94‑1 (MQ=60)
CGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATG < SRR4302540.7564712/94‑1 (MQ=60)
CGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATG > SRR4302540.171624/1‑94 (MQ=60)
GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG < SRR4302540.1620893/94‑1 (MQ=60)
CGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAT > SRR4302540.4544222/1‑94 (MQ=60)
CGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAT < SRR4302540.9643006/94‑1 (MQ=60)
GCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATG < SRR4302540.9364679/94‑1 (MQ=60)
CACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGC > SRR4302540.8600891/1‑94 (MQ=60)
ACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCA < SRR4302540.9537220/94‑1 (MQ=60)
CTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAG < SRR4302540.3161497/94‑1 (MQ=60)
CTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAG < SRR4302540.8761970/94‑1 (MQ=60)
TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC < SRR4302540.4795496/94‑1 (MQ=60)
TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC > SRR4302540.1172678/1‑94 (MQ=60)
TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC < SRR4302540.3379215/94‑1 (MQ=60)
ATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCA > SRR4302540.5890070/1‑94 (MQ=60)
ATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCA > SRR4302540.3584267/1‑94 (MQ=60)
ATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCA < SRR4302540.1274181/94‑1 (MQ=60)
TTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAA < SRR4302540.3167301/94‑1 (MQ=60)
TGCCCACCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAAT < SRR4302540.1567582/94‑1 (MQ=60)
TGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAAT < SRR4302540.5141638/94‑1 (MQ=60)
CCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAA > SRR4302540.8461396/1‑94 (MQ=60)
CCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT > SRR4302540.8672316/1‑94 (MQ=60)
CCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT > SRR4302540.786532/1‑94 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG < SRR4302540.3838774/94‑1 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG > SRR4302540.3368187/1‑94 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG > SRR4302540.3369338/1‑94 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG > SRR4302540.1536604/1‑94 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG > SRR4302540.8850880/1‑94 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG > SRR4302540.9458769/1‑94 (MQ=60)
CACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGG < SRR4302540.4119358/94‑1 (MQ=60)
ACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGC > SRR4302540.8106403/1‑94 (MQ=60)
ACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGC < SRR4302540.9961009/94‑1 (MQ=60)
ACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGC > SRR4302540.5274671/1‑94 (MQ=60)
CTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCG < SRR4302540.1848581/94‑1 (MQ=60)
GCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGAC > SRR4302540.5723707/1‑94 (MQ=60)
CGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACG > SRR4302540.7124354/1‑94 (MQ=60)
CGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACG > SRR4302540.606033/1‑94 (MQ=60)
GGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGTTGCAGCAAAATAATGGCGACGT > SRR4302540.6139948/1‑94 (MQ=60)
GGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGT > SRR4302540.9987632/1‑94 (MQ=60)
GGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTG < SRR4302540.2903095/94‑1 (MQ=60)
CGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTA < SRR4302540.9643627/94‑1 (MQ=60)
CGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGAGACGTGTTA > SRR4302540.7531827/1‑94 (MQ=60)
GACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCTATGCAGCAAAATAATGACGACGGGTTAG > SRR4302540.8834341/1‑94 (MQ=60)
GACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAG > SRR4302540.6822132/1‑94 (MQ=60)
GACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAG < SRR4302540.5346384/94‑1 (MQ=60)
GACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGACTGGATGGGCGATGCAGAAAAAAAATGGGGACGGGTTAG > SRR4302540.2808928/1‑94 (MQ=60)
ACGCCTCCGGCGATGCTCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGT < SRR4302540.6792234/94‑1 (MQ=60)
CTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTC > SRR4302540.560036/1‑94 (MQ=60)
TCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCT < SRR4302540.4086966/94‑1 (MQ=60)
CGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGC < SRR4302540.8967827/94‑1 (MQ=60)
GGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCG < SRR4302540.4837476/94‑1 (MQ=60)
GGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCG < SRR4302540.6244065/94‑1 (MQ=60)
GCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGG < SRR4302540.6939262/94‑1 (MQ=60)
GATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTG > SRR4302540.1473801/1‑94 (MQ=60)
ATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGG < SRR4302540.3894436/94‑1 (MQ=60)
TCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCA > SRR4302540.477378/1‑94 (MQ=60)
CAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCAC < SRR4302540.2461008/94‑1 (MQ=60)
AATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACG < SRR4302540.3243575/94‑1 (MQ=60)
ATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGC > SRR4302540.9497932/1‑94 (MQ=60)
ATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGC < SRR4302540.3614910/94‑1 (MQ=60)
CGTCAGCGCGAAGCCTTTATGGCCCGCCGGTTTGGATGGGCGATGCAGCAAAATAATGGCGACGAGTTAGTTGTCTGCGGTGGCTGGCACGCAC > SRR4302540.3560760/1‑94 (MQ=60)
CGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTC > SRR4302540.3304863/1‑94 (MQ=60)
GTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCC > SRR4302540.7700565/1‑94 (MQ=60)
TCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCG < SRR4302540.1136383/94‑1 (MQ=60)
AGCGCGAGTCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGC < SRR4302540.9578902/94‑1 (MQ=60)
AGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGC < SRR4302540.4226887/94‑1 (MQ=60)
GCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCC > SRR4302540.1139527/1‑94 (MQ=60)
GCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCA < SRR4302540.5420815/94‑1 (MQ=60)
GCGCCAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCA < SRR4302540.3263866/94‑1 (MQ=60)
agaGAAGCCTTTAGGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGCCGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCAC < SRR4302540.3008148/91‑1 (MQ=60)
CGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCAC < SRR4302540.5646729/94‑1 (MQ=60)
GAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGG > SRR4302540.6477914/1‑94 (MQ=60)
CAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGG < SRR4302540.296825/94‑1 (MQ=60)
AGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCA > SRR4302540.7175232/1‑94 (MQ=60)
AGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCA > SRR4302540.10014325/1‑94 (MQ=60)
GCCTTTATGGCCCGCCGGATTTGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAA < SRR4302540.5985217/94‑1 (MQ=60)
CCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAA > SRR4302540.4469034/1‑94 (MQ=60)
CCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAA > SRR4302540.7690420/1‑94 (MQ=60)
CTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAG > SRR4302540.2708444/1‑94 (MQ=60)
CTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAG > SRR4302540.6497871/1‑94 (MQ=60)
TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT < SRR4302540.2671377/94‑1 (MQ=60)
TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT < SRR4302540.4341705/94‑1 (MQ=60)
TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT < SRR4302540.9573440/94‑1 (MQ=60)
ATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGT < SRR4302540.6323475/94‑1 (MQ=60)
ATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGT > SRR4302540.1054126/1‑94 (MQ=60)
ATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGT < SRR4302540.3679088/94‑1 (MQ=60)
ATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGT < SRR4302540.6323476/94‑1 (MQ=60)
ATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGT > SRR4302540.253026/1‑94 (MQ=60)
GGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGG < SRR4302540.5149275/94‑1 (MQ=60)
GCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGC < SRR4302540.9647499/94‑1 (MQ=60)
CCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCG > SRR4302540.8403604/1‑94 (MQ=60)
CCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC < SRR4302540.8772663/94‑1 (MQ=60)
CGGATTTGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302540.3294767/94‑1 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT > SRR4302540.1659203/1‑94 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302540.158519/94‑1 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302540.6560323/94‑1 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302540.3794159/94‑1 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302540.5563478/94‑1 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302540.4948364/94‑1 (MQ=60)
|
TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT > NC_000913/2204165‑2204351
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
