Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,208,197 |
A→C |
T360P (ACC→CCC) |
b2122 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,208,197 | 0 | A | C | 99.2%
| 763.2
/ ‑5.0
| 237 | T360P (ACC→CCC) | b2122 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (135/100); total (136/101) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
Only 100 of 255 total aligned reads displayed.
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT > NC_000913/2208107‑2208285
|
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 1:8598365/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 1:1717843/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc < 2:6344392/93‑1 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGGCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 2:5278763/1‑93 (MQ=255)
aaGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATc > 1:9512811/1‑93 (MQ=255)
aaGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATc < 2:2476557/93‑1 (MQ=255)
aGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATcc > 2:3437431/1‑93 (MQ=255)
aGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATcc < 2:4516580/93‑1 (MQ=255)
gCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATccc < 1:5451131/93‑1 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga < 1:7621201/93‑1 (MQ=255)
aaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGac < 2:6584143/93‑1 (MQ=255)
cTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACAcc < 1:2054667/93‑1 (MQ=255)
ttGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGACATTGAGCATTATGGTTTACGCATCTGGTTTGCCGATCACGACACCg > 1:5846754/1‑93 (MQ=255)
tGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCgg < 2:11741/93‑1 (MQ=255)
tGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCgg < 2:6647419/93‑1 (MQ=255)
tcatcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAg < 1:325083/93‑1 (MQ=255)
tcatcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAg < 2:2132045/93‑1 (MQ=255)
catcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGCTTACGCATCTGGTTTACCGATTCCGACAACGGCAGt > 1:9412949/1‑93 (MQ=255)
atcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTa > 2:9534449/1‑93 (MQ=255)
tcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAt > 2:671451/1‑93 (MQ=255)
tcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAt > 1:7168538/1‑93 (MQ=255)
cTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtt < 2:7043739/93‑1 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt < 1:6263879/93‑1 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt > 2:3856564/1‑93 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt < 1:1748009/93‑1 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt < 2:8801064/93‑1 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt < 1:8783720/93‑1 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt < 2:2321815/93‑1 (MQ=255)
ggCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGc > 2:4604832/1‑93 (MQ=255)
gCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGGATTATGGTTTACCCATCTGGTTTCCTGATCCCGACACCGGCAGTATTTTGCa > 1:5408396/1‑93 (MQ=255)
gCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCa < 2:866751/93‑1 (MQ=255)
cTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAc < 2:4240912/93‑1 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc > 1:9028736/1‑93 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc > 1:3382718/1‑93 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc > 2:4155041/1‑93 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc < 1:7584887/93‑1 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAAGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc < 1:793259/93‑1 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt > 2:4325266/1‑93 (MQ=255)
gtgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCtt < 2:1863/93‑1 (MQ=255)
tgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCttt < 1:2385940/93‑1 (MQ=255)
tgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCttt > 1:2251460/1‑93 (MQ=255)
gtCTTTATGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTc < 2:3525848/93‑1 (MQ=255)
cTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgc < 2:8646350/93‑1 (MQ=255)
cTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgc < 1:5362864/93‑1 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 1:6685803/1‑93 (MQ=255)
tAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCa > 1:4252247/1‑93 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt < 1:2783059/93‑1 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt < 2:1463930/93‑1 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt > 2:4893519/1‑93 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt > 2:6758240/1‑93 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg < 2:5190322/93‑1 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg < 2:4963177/93‑1 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg < 2:7362937/93‑1 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg > 1:1356304/1‑93 (MQ=255)
aTGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTgg > 2:3346002/1‑93 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc > 1:530109/1‑93 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc < 1:1584582/93‑1 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc > 1:3222286/1‑93 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc > 2:8064377/1‑93 (MQ=255)
gTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCcgc > 1:9556963/1‑93 (MQ=255)
tGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGa > 1:9371127/1‑93 (MQ=255)
gCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGaa > 1:2716624/1‑93 (MQ=255)
gCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGaa > 1:8744740/1‑93 (MQ=255)
tGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGt > 2:2884306/1‑93 (MQ=255)
ggCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTg > 1:3537189/1‑93 (MQ=255)
ggCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTg > 1:7529993/1‑93 (MQ=255)
gCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGa < 2:8200917/93‑1 (MQ=255)
ggATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACa < 1:29085/93‑1 (MQ=255)
gATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAg > 1:8116954/1‑93 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa > 2:2438058/1‑93 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa > 1:962613/1‑93 (MQ=255)
ttGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaaa > 1:98957/1‑93 (MQ=255)
aGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACt < 1:9112535/93‑1 (MQ=255)
gaTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCa < 1:7238640/92‑1 (MQ=255)
tATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCg > 2:3657815/1‑93 (MQ=255)
tATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCg > 1:9276459/1‑93 (MQ=255)
tATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCg > 2:4046102/1‑93 (MQ=255)
tGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGc > 2:5350106/1‑93 (MQ=255)
gTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAg < 2:6229969/93‑1 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc < 1:1449907/93‑1 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc > 1:2341980/1‑93 (MQ=255)
ttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCt < 1:448624/93‑1 (MQ=255)
ttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCt < 2:5777072/93‑1 (MQ=255)
ttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCt > 1:2534847/1‑93 (MQ=255)
tACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTa < 1:3672543/93‑1 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc > 2:545083/1‑93 (MQ=255)
cATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgcg > 1:561938/1‑93 (MQ=255)
cATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgcg > 2:7444029/1‑93 (MQ=255)
aTCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 1:1815853/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc < 1:6795543/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc < 1:8370521/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc < 1:5804610/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc < 1:651551/93‑1 (MQ=255)
tGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCgg < 1:3931724/93‑1 (MQ=255)
tGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCgg > 1:1121968/1‑93 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc > 2:2725441/1‑93 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc > 2:3564900/1‑93 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc < 1:4886369/93‑1 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc > 2:9187737/1‑93 (MQ=255)
gTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCt > 1:8931697/1‑93 (MQ=255)
|
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT > NC_000913/2208107‑2208285
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTA > NC_000913/2208105‑2208290
|
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCC < SRR4302540.9437571/94‑1 (MQ=60)
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCC > SRR4302540.9791573/1‑94 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTTAGCATTATGTGTTACGCATCTGGTTTCCC > SRR4302540.713893/1‑94 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCC > SRR4302540.903396/1‑94 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCC > SRR4302540.8698306/1‑94 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCC > SRR4302540.1736392/1‑94 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTT‑CCG > SRR4302540.8698305/1‑94 (MQ=60)
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCG > SRR4302540.3310257/1‑94 (MQ=60)
GAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGA < SRR4302540.9613280/94‑1 (MQ=60)
GAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATC > SRR4302540.9625491/1‑94 (MQ=60)
AGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCC < SRR4302540.9021708/94‑1 (MQ=60)
GCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCG < SRR4302540.5511120/94‑1 (MQ=60)
CAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGA < SRR4302540.1221173/94‑1 (MQ=60)
CAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGA > SRR4302540.440371/1‑94 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC > SRR4302540.9216388/1‑94 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC < SRR4302540.589261/94‑1 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC < SRR4302540.7706902/94‑1 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC < SRR4302540.9461567/94‑1 (MQ=60)
AAAGCTGGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC < SRR4302540.8452645/94‑1 (MQ=60)
AAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACA < SRR4302540.2701433/94‑1 (MQ=60)
AGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACAC > SRR4302540.9389389/1‑94 (MQ=60)
GCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACC > SRR4302540.6919584/1‑94 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCG < SRR4302540.2076783/94‑1 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCG > SRR4302540.1827192/1‑94 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGACATTGAGCATTATGGTTTACGCATCTGGTTTGCCGATCACGACACCG > SRR4302540.5911426/1‑94 (MQ=60)
TGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGC > SRR4302540.8258741/1‑94 (MQ=60)
TGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGC > SRR4302540.7678214/1‑94 (MQ=60)
TGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGC > SRR4302540.160951/1‑94 (MQ=60)
TGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCCATCCCGACACCGGC > SRR4302540.7678215/1‑94 (MQ=60)
ATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAG > SRR4302540.3659775/1‑94 (MQ=60)
TCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGT < SRR4302540.328340/94‑1 (MQ=60)
TCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGT < SRR4302540.328339/94‑1 (MQ=60)
TCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGGTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGT > SRR4302540.9524865/1‑94 (MQ=60)
TCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGCTTACGCATCTGGTTTACCGATTCCGACAACGGCAGT > SRR4302540.9524866/1‑94 (MQ=60)
CATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTA > SRR4302540.3657512/1‑94 (MQ=60)
ATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAT > SRR4302540.7248454/1‑94 (MQ=60)
CTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTT > SRR4302540.6632144/1‑94 (MQ=60)
TGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTT < SRR4302540.1766937/94‑1 (MQ=60)
TGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTT < SRR4302540.6333566/94‑1 (MQ=60)
GCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTG < SRR4302540.8885391/94‑1 (MQ=60)
GGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGGATTATGGTTTACCCATCTGGTTTCCTGATCCCGACACCGGCAGTATTTTGCA > SRR4302540.5467866/1‑94 (MQ=60)
GGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCA > SRR4302540.5467868/1‑94 (MQ=60)
GGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCA < SRR4302540.924679/94‑1 (MQ=60)
GGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCA < SRR4302540.8844836/94‑1 (MQ=60)
CTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACC > SRR4302540.9137078/1‑94 (MQ=60)
CTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACC > SRR4302540.3419643/1‑94 (MQ=60)
CTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACC > SRR4302540.2785883/1‑94 (MQ=60)
CTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACC > SRR4302540.3419642/1‑94 (MQ=60)
TGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACCCCGGCAGTATTTTGCACCT > SRR4302540.2402972/1‑94 (MQ=60)
TGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCT < SRR4302540.3010294/94‑1 (MQ=60)
TGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCT > SRR4302540.6855641/1‑94 (MQ=60)
TGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCT < SRR4302540.7670043/94‑1 (MQ=60)
TGGTGTCTTTAGGTATGCGTTGCTGGCAAGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCT < SRR4302540.801680/94‑1 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT < SRR4302540.3780547/94‑1 (MQ=60)
GTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTT > SRR4302540.6007521/1‑94 (MQ=60)
GTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTT > SRR4302540.2275631/1‑94 (MQ=60)
TGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTC < SRR4302540.2411651/94‑1 (MQ=60)
GTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCG < SRR4302540.918207/94‑1 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCG > SRR4302540.6759629/1‑94 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCG < SRR4302540.5421770/94‑1 (MQ=60)
TTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCA > SRR4302540.4298508/1‑94 (MQ=60)
TTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCA > SRR4302540.5995527/1‑94 (MQ=60)
TTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCA < SRR4302540.5360611/94‑1 (MQ=60)
AGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT < SRR4302540.98692/94‑1 (MQ=60)
AGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT > SRR4302540.4962782/1‑94 (MQ=60)
AGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT < SRR4302540.5098836/94‑1 (MQ=60)
GGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTT < SRR4302540.1673777/94‑1 (MQ=60)
GGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTT < SRR4302540.2813122/94‑1 (MQ=60)
GGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTT < SRR4302540.141889/94‑1 (MQ=60)
GTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTG > SRR4302540.1370600/1‑94 (MQ=60)
TATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGG > SRR4302540.2269151/1‑94 (MQ=60)
TATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGG > SRR4302540.1533272/1‑94 (MQ=60)
ATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGC > SRR4302540.3257306/1‑94 (MQ=60)
ATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGC > SRR4302540.535836/1‑94 (MQ=60)
TGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCC < SRR4302540.1601891/94‑1 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302540.9669973/1‑94 (MQ=60)
TTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGA > SRR4302540.2515227/1‑94 (MQ=60)
TTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGA > SRR4302540.9482700/1‑94 (MQ=60)
TGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAA > SRR4302540.8846230/1‑94 (MQ=60)
TGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAA > SRR4302540.2745918/1‑94 (MQ=60)
TGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAA > SRR4302540.5617830/1‑94 (MQ=60)
TGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTG > SRR4302540.7614287/1‑94 (MQ=60)
TGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTG > SRR4302540.3575812/1‑94 (MQ=60)
CAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAC > SRR4302540.5738681/1‑94 (MQ=60)
AGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACA > SRR4302540.1414972/1‑94 (MQ=60)
GGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAG > SRR4302540.9765500/1‑94 (MQ=60)
GGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAG > SRR4302540.8211150/1‑94 (MQ=60)
GGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAG < SRR4302540.29393/94‑1 (MQ=60)
GGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAG > SRR4302540.2881248/1‑94 (MQ=60)
GATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGG > SRR4302540.4354448/1‑94 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA > SRR4302540.972564/1‑94 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA > SRR4302540.1983708/1‑94 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302540.242124/1‑94 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302540.100003/1‑94 (MQ=60)
TGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGCATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAAC > SRR4302540.475525/1‑94 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC < SRR4302540.9222053/94‑1 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC > SRR4302540.8881849/1‑94 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC > SRR4302540.3859273/1‑94 (MQ=60)
GATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAC < SRR4302540.7319375/94‑1 (MQ=60)
CATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAC < SRR4302540.2777967/94‑1 (MQ=60)
CATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAC > SRR4302540.2333151/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302540.7604431/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC < SRR4302540.1761177/94‑1 (MQ=60)
TTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCG > SRR4302540.9387362/1‑94 (MQ=60)
TATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGG > SRR4302540.6745565/1‑94 (MQ=60)
TATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGG < SRR4302540.7981890/94‑1 (MQ=60)
TATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGG < SRR4302540.5972417/94‑1 (MQ=60)
GGTTTACGCATCTGGTTTCCCTATCCCGACACCGGCAGAATTTTGCATCTTTCGCGCAGTTGGCCGCGAAGGGAACAGGAAAACTCACCGGCAG > SRR4302540.9637729/1‑94 (MQ=60)
GGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAG < SRR4302540.655970/94‑1 (MQ=60)
GGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAG > SRR4302540.9637728/1‑94 (MQ=60)
GGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGCTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAG > SRR4302540.7451/1‑94 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGC < SRR4302540.5878722/94‑1 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGC > SRR4302540.9521270/1‑94 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGC > SRR4302540.2367214/1‑94 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT < SRR4302540.1465674/94‑1 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT > SRR4302540.2562186/1‑94 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT > SRR4302540.5558890/1‑94 (MQ=60)
TTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTA < SRR4302540.453404/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302540.8138011/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302540.8728760/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302540.889716/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302540.8001276/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302540.3712707/94‑1 (MQ=60)
CGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGC < SRR4302540.9678004/94‑1 (MQ=60)
GCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCG > SRR4302540.3355323/1‑94 (MQ=60)
GCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCG > SRR4302540.568050/1‑94 (MQ=60)
GCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAAGCG > SRR4302540.3160718/1‑94 (MQ=60)
GCATCTGGTCTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCG > SRR4302540.7628800/1‑94 (MQ=60)
CATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGT < SRR4302540.2410103/94‑1 (MQ=60)
CATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGT > SRR4302540.409479/1‑94 (MQ=60)
GTCTGGTTTCCCGATCCCGAAACCGGCAGTATTTTGCACCTTTCGCGCAGTTGTCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302540.1835682/94‑1 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302540.5461783/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302540.1835683/94‑1 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG < SRR4302540.658480/94‑1 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG < SRR4302540.5868749/94‑1 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG < SRR4302540.8467664/94‑1 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG < SRR4302540.6870701/94‑1 (MQ=60)
CTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGG > SRR4302540.1133619/1‑94 (MQ=60)
CTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGG > SRR4302540.2172954/1‑94 (MQ=60)
CTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGG > SRR4302540.5434861/1‑94 (MQ=60)
TGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGC < SRR4302540.3974230/94‑1 (MQ=60)
TGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGC > SRR4302540.8672620/1‑94 (MQ=60)
TGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGC > SRR4302540.7300108/1‑94 (MQ=60)
GGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT < SRR4302540.4938872/94‑1 (MQ=60)
GGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT > SRR4302540.9035964/1‑94 (MQ=60)
CCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTA < SRR4302540.7608195/94‑1 (MQ=60)
|
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTA > NC_000913/2208105‑2208290
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
