Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,216,746	G→C	S252S (TCC→TCG)	yehZ ←	putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,216,746	0	G	C	100.0%	813.7 / NA	252	S252S (TCC→TCG)	yehZ	putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (112/140); total (112/140)

Only 100 of 268 total aligned reads displayed.

GCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC  >  NC_000913/2216656‑2216834

  tGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTCCTGATACTCCCTCAACACCGACt                                                                                      >  1:7929402/1‑93 (MQ=255)

   ggCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTc                                                                                     >  2:3072252/1‑93 (MQ=255)

    gCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCa                                                                                    <  1:9692041/93‑1 (MQ=255)

     cATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCAc                                                                                   <  1:845054/93‑1 (MQ=255)

      aTTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGGGAAGACTTGCTGCAGCCACTGTGCCCTTTGCCGATACTCCCTCAACACCGACTCAcc                                                                                  >  2:4210514/1‑92 (MQ=255)

       ttCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGc                                                                                 >  2:10037184/1‑93 (MQ=255)

           gTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcaccc                                                                             >  2:7419758/1‑92 (MQ=255)

           gTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcacca                                                                             <  2:839544/93‑1 (MQ=255)

            ttGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcaccac                                                                            <  1:9746029/93‑1 (MQ=255)

            ttGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGcaccac                                                                            >  2:3261777/1‑93 (MQ=255)

             tgctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACt                                                                           <  1:7426194/93‑1 (MQ=255)

             tgctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACt                                                                           <  1:4156245/93‑1 (MQ=255)

               ctgcAATTTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCGCTGTGCCATTTGCGGATACTCCCTCAACACCGACCCACGCACCACTgg                                                                         <  2:7908290/93‑1 (MQ=255)

               ctgcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTgg                                                                         <  1:504177/93‑1 (MQ=255)

                 gcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCCCCACTTGtc                                                                       >  2:5810056/1‑92 (MQ=255)

                 gcAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTg                                                                       >  2:6516312/1‑93 (MQ=255)

                  cAATGTTTTTGCATCGAGGCTGGCGAAGAATGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGc                                                                      >  1:3399652/1‑93 (MQ=255)

                    aTGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAg                                                                    >  1:1242164/1‑93 (MQ=255)

                    aTGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAg                                                                    <  2:4954049/93‑1 (MQ=255)

                    aTGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAg                                                                    >  1:2248020/1‑93 (MQ=255)

                     tGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAgg                                                                   <  2:7822910/93‑1 (MQ=255)

                        ttttGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGCGCCATTTGCGGATACTCCCTCAACACCGCCTCACGCCCCCATGGTGCAGgcgg                                                                >  1:2446939/1‑92 (MQ=255)

                         tttGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTCGTGCAGGcgcg                                                               >  2:6775843/1‑93 (MQ=255)

                          ttGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGt                                                              <  1:8152702/93‑1 (MQ=255)

                          ttGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGGGCAGGCGCGt                                                              >  1:6944465/1‑93 (MQ=255)

                             cATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACTACTGGTGCAGGCGCGTAGa                                                           <  2:7582940/93‑1 (MQ=255)

                             cATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGa                                                           <  2:4082624/93‑1 (MQ=255)

                                cGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAg                                                        <  1:4449608/93‑1 (MQ=255)

                                cGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAg                                                        <  2:9026233/93‑1 (MQ=255)

                                  aGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGt                                                      >  1:9540362/1‑93 (MQ=255)

                                  aGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGt                                                      <  1:5773037/93‑1 (MQ=255)

                                     cTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGc                                                   <  1:2015780/93‑1 (MQ=255)

                                     cTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGc                                                   >  2:1726391/1‑93 (MQ=255)

                                         cGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCacac                                               >  2:4282407/1‑93 (MQ=255)

                                         cGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCacac                                               >  2:9862724/1‑93 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                             <  2:5523318/93‑1 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                             >  1:7781709/1‑93 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                             >  1:5876682/1‑93 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                             <  1:5841496/93‑1 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                             >  2:6397020/1‑93 (MQ=255)

                                           aaGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCt                                             <  1:3789968/93‑1 (MQ=255)

                                            aGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCtt                                            <  2:8124566/93‑1 (MQ=255)

                                            aGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCtt                                            <  1:484483/93‑1 (MQ=255)

                                                 tgCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCACCACGTACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGa                                       <  1:5567460/92‑1 (MQ=255)

                                                 ggCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGa                                       <  2:2919282/93‑1 (MQ=255)

                                                     gTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACGACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGGGGATcac                                   >  1:9057326/1‑91 (MQ=255)

                                                     gTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGc                                   >  1:3315799/1‑93 (MQ=255)

                                                     gTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGc                                   >  1:7171709/1‑93 (MQ=255)

                                                     gTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGc                                   >  1:2942155/1‑93 (MQ=255)

                                                      tAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCt                                  <  1:6017668/93‑1 (MQ=255)

                                                        gCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTa                                <  1:8782654/93‑1 (MQ=255)

                                                        gCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTa                                >  2:8756107/1‑93 (MQ=255)

                                                        gCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTa                                <  2:5635441/93‑1 (MQ=255)

                                                         ccACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTaa                               <  1:2814969/93‑1 (MQ=255)

                                                         ccACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTaa                               <  1:1724184/93‑1 (MQ=255)

                                                         ccACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTaa                               <  2:9574975/93‑1 (MQ=255)

                                                         ccACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTaa                               <  2:373503/93‑1 (MQ=255)

                                                          cACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAg                              >  2:9439429/1‑93 (MQ=255)

                                                            cTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGt                            >  2:7047133/1‑93 (MQ=255)

                                                            cTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGt                            >  1:6872268/1‑93 (MQ=255)

                                                             tgtgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGtt                           <  1:9975909/93‑1 (MQ=255)

                                                              gtgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGttt                          <  2:1764022/93‑1 (MQ=255)

                                                              gtgCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGttt                          <  1:3857100/93‑1 (MQ=255)

                                                              gtaccATTTGCGGATACTCCCTCAACACCGACTCACGCACCGCTGGTGCAGGCGCGTAGATAGGTTGCACCCCTTGCGGATCGCTTAAGGttt                          <  2:7279411/90‑1 (MQ=255)

                                                                 ccATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCa                       <  1:112178/93‑1 (MQ=255)

                                                                  cATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAg                      >  1:6627931/1‑93 (MQ=255)

                                                                  cATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAg                      >  2:9055147/1‑93 (MQ=255)

                                                                  cATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAg                      >  2:1903103/1‑93 (MQ=255)

                                                                   aTTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGc                     >  2:3628522/1‑93 (MQ=255)

                                                                   aTTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGc                     >  1:9676339/1‑93 (MQ=255)

                                                                   aTTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGc                     >  2:279472/1‑93 (MQ=255)

                                                                    tttGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGcc                    <  2:3518100/93‑1 (MQ=255)

                                                                     ttGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGccc                   <  2:2016417/93‑1 (MQ=255)

                                                                      tGCGGATACTCCCACAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTGTGCAGcccc                  <  2:7741439/93‑1 (MQ=255)

                                                                       gCGGATGCTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCa                 <  1:4315692/93‑1 (MQ=255)

                                                                       gCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCa                 <  1:1628997/93‑1 (MQ=255)

                                                                       gCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCa                 <  2:1048957/93‑1 (MQ=255)

                                                                        cGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAg                <  2:1260128/93‑1 (MQ=255)

                                                                        cGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAg                >  2:6616682/1‑93 (MQ=255)

                                                                         ggATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAgc               <  1:9822631/93‑1 (MQ=255)

                                                                         ggATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAgc               <  1:6080064/93‑1 (MQ=255)

                                                                           aTACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAgcgc             <  2:3836488/93‑1 (MQ=255)

                                                                             aCTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGcgccg           >  2:9411587/1‑93 (MQ=255)

                                                                             aCTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGcgccg           >  2:4079576/1‑93 (MQ=255)

                                                                              cTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGcgccgc          <  1:9005728/93‑1 (MQ=255)

                                                                                cccTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTa        <  2:4857000/93‑1 (MQ=255)

                                                                                 ccTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACCCCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAc       <  2:5290198/93‑1 (MQ=255)

                                                                                  cTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAcc      <  1:4532674/93‑1 (MQ=255)

                                                                                  cTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAcc      >  2:1159952/1‑93 (MQ=255)

                                                                                  cTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAcc      <  2:9302977/93‑1 (MQ=255)

                                                                                  cTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAcc      <  1:9247992/93‑1 (MQ=255)

                                                                                  cTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGCTGGCACTCCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTAcc      <  2:503781/93‑1 (MQ=255)

                                                                                   tCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCTGCTAccc     <  2:6167518/93‑2 (MQ=255)

                                                                                   tCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCg     >  1:517114/1‑93 (MQ=255)

                                                                                   tCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCg     >  1:7342333/1‑93 (MQ=255)

                                                                                    cAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGc                        <  1:1747887/73‑1 (MQ=255)

                                                                                     aaCACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCggg   <  1:7598736/93‑1 (MQ=255)

                                                                                      acacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGc  <  1:263358/93‑1 (MQ=255)

                                                                                      acacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGc  <  1:5534161/93‑1 (MQ=255)

                                                                                      acacCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGc  <  1:6550973/93‑1 (MQ=255)

GCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC  >  NC_000913/2216656‑2216834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTCA  >  NC_000913/2216653‑2216839

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACC                                                                                               <  SRR4302540.5537823/94‑1 (MQ=60)

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACC                                                                                               <  SRR4302540.1533460/94‑1 (MQ=60)

  TGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGA                                                                                             >  SRR4302540.1421316/1‑94 (MQ=60)

    CTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACT                                                                                           <  SRR4302540.6001584/94‑1 (MQ=60)

    CTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTCCTGATACTCCCTCAACACCGACT                                                                                           >  SRR4302540.8021814/1‑94 (MQ=60)

      GGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCA                                                                                         <  SRR4302540.9835692/94‑1 (MQ=60)

       GCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCAC                                                                                        <  SRR4302540.4504986/94‑1 (MQ=60)

       GCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCAC                                                                                        >  SRR4302540.6867077/1‑94 (MQ=60)

       GCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCAC                                                                                        <  SRR4302540.9806030/94‑1 (MQ=60)

        CATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACG                                                                                       <  SRR4302540.854020/94‑1 (MQ=60)

        CATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACG                                                                                       <  SRR4302540.3893669/94‑1 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302540.7622550/1‑94 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302540.1739555/1‑94 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302540.3001518/1‑94 (MQ=60)

         ATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGC                                                                                      >  SRR4302540.9147434/1‑94 (MQ=60)

          TTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCC                                                                                     >  SRR4302540.1557146/1‑94 (MQ=60)

           TCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACATCGACTCACGCAC                                                                                    >  SRR4302540.6128004/1‑94 (MQ=60)

           TCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCAC                                                                                    >  SRR4302540.6128003/1‑94 (MQ=60)

            CAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACC                                                                                   <  SRR4302540.9682317/94‑1 (MQ=60)

             AGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCA                                                                                  <  SRR4302540.7692443/94‑1 (MQ=60)

             AGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCA                                                                                  <  SRR4302540.8831964/94‑1 (MQ=60)

              GTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCAC                                                                                 <  SRR4302540.4968257/94‑1 (MQ=60)

               TTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACT                                                                                <  SRR4302540.9860403/94‑1 (MQ=60)

                TGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTG                                                                               <  SRR4302540.4201273/94‑1 (MQ=60)

                TGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTG                                                                               <  SRR4302540.7508922/94‑1 (MQ=60)

                 GCTGCAATGTTTTTGCATCGATGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGG                                                                              >  SRR4302540.8437090/1‑94 (MQ=60)

                  CTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGT                                                                             <  SRR4302540.509576/94‑1 (MQ=60)

                  CTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGT                                                                             <  SRR4302540.5614174/94‑1 (MQ=60)

                  CTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGT                                                                             <  SRR4302540.5614173/94‑1 (MQ=60)

                    GCAATGTTTTTGCATCGAGGCTGGCGAAGAATGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGC                                                                           >  SRR4302540.3436721/1‑94 (MQ=60)

                     CAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCA                                                                          >  SRR4302540.9495631/1‑94 (MQ=60)

                      AATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAG                                                                         >  SRR4302540.2272165/1‑94 (MQ=60)

                      AATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAG                                                                         >  SRR4302540.1254837/1‑94 (MQ=60)

                      AATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAG                                                                         >  SRR4302540.1254836/1‑94 (MQ=60)

                       ATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGGAGACACTGAGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGGGCAGG                                                                        >  SRR4302540.8795520/1‑94 (MQ=60)

                        TGTTTCTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGC                                                                       <  SRR4302540.10023311/94‑1 (MQ=60)

                          TTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGCGCCATTTGCGGATACTCCCTCAACACCGCCTCACGCCCCCATGGTGCAGGCGG                                                                     >  SRR4302540.2473288/1‑94 (MQ=60)

                           TTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCG                                                                    <  SRR4302540.5794255/94‑1 (MQ=60)

                           TTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCG                                                                    >  SRR4302540.7367871/1‑94 (MQ=60)

                           TTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTAACGCACCACTGGTGCAGGCGCG                                                                    >  SRR4302540.7367872/1‑94 (MQ=60)

                            TTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGGGCAGGCGCGT                                                                   >  SRR4302540.7021760/1‑94 (MQ=60)

                             TTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTA                                                                  <  SRR4302540.8247353/94‑1 (MQ=60)

                             TTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTA                                                                  <  SRR4302540.2271835/94‑1 (MQ=60)

                             TTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTA                                                                  <  SRR4302540.7081265/94‑1 (MQ=60)

                                CATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGAT                                                               >  SRR4302540.4757421/1‑94 (MQ=60)

                                  TCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAG                                                             >  SRR4302540.9797329/1‑94 (MQ=60)

                                  TCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAG                                                             <  SRR4302540.3382795/94‑1 (MQ=60)

                                  TCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAG                                                             <  SRR4302540.4158006/94‑1 (MQ=60)

                                  TCGAGGCTGGCGAAGAATGGCTGTAGCCACTGTGCCCTTTGCGGATACTCACTCAACACCGACTCACGCAACACTGGTGCAGAAGCGTAGATAG                                                             >  SRR4302540.3968250/1‑94 (MQ=60)

                                   CGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACGCCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGG                                                            <  SRR4302540.6331715/94‑1 (MQ=60)

                                   CGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGG                                                            <  SRR4302540.4497832/94‑1 (MQ=60)

                                   CGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGG                                                            <  SRR4302540.4497552/94‑1 (MQ=60)

                                    GAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGT                                                           >  SRR4302540.9653260/1‑94 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTT                                                          <  SRR4302540.5836808/94‑1 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTT                                                          >  SRR4302540.6040356/1‑94 (MQ=60)

                                     AGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTT                                                          <  SRR4302540.3890449/94‑1 (MQ=60)

                                       GCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGC                                                        >  SRR4302540.8954359/1‑94 (MQ=60)

                                        CTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCA                                                       <  SRR4302540.2037574/94‑1 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302540.7872667/1‑94 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302540.7872666/1‑94 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302540.7606019/1‑94 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302540.1761266/1‑94 (MQ=60)

                                             GAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCT                                                  >  SRR4302540.5941640/1‑94 (MQ=60)

                                              AAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTT                                                 <  SRR4302540.3101808/94‑1 (MQ=60)

                                              AAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTT                                                 <  SRR4302540.5906092/94‑1 (MQ=60)

                                              AAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTT                                                 <  SRR4302540.3831289/94‑1 (MQ=60)

                                               AGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTG                                                <  SRR4302540.489665/94‑1 (MQ=60)

                                                GACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGC                                               >  SRR4302540.9715889/1‑94 (MQ=60)

                                                 ACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCG                                              >  SRR4302540.2254505/1‑94 (MQ=60)

                                                  CTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGG                                             <  SRR4302540.7490420/94‑1 (MQ=60)

                                                    TGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCACCACGTACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGAT                                           <  SRR4302540.5628766/94‑1 (MQ=60)

                                                    GGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGAT                                           <  SRR4302540.4480198/94‑1 (MQ=60)

                                                      CTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCG                                         >  SRR4302540.939881/1‑94 (MQ=60)

                                                      CTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCG                                         <  SRR4302540.2002195/94‑1 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACGACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGGGGATCAC                                        >  SRR4302540.9166060/1‑94 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGC                                        >  SRR4302540.2974485/1‑94 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGC                                        <  SRR4302540.8993248/94‑1 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGC                                        >  SRR4302540.3352154/1‑94 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGC                                        >  SRR4302540.7251650/1‑94 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGC                                        >  SRR4302540.5121214/1‑94 (MQ=60)

                                                       TGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGAGCAGGCGCGAAGATAGGTTGCACACCTTGCGGATAGC                                        >  SRR4302540.8036302/1‑94 (MQ=60)

                                                        GTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCT                                       <  SRR4302540.4502219/94‑1 (MQ=60)

                                                         TAGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTT                                      <  SRR4302540.6084411/94‑1 (MQ=60)

                                                          AGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTA                                     <  SRR4302540.5860640/94‑1 (MQ=60)

                                                          AGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTA                                     <  SRR4302540.5860641/94‑1 (MQ=60)

                                                          AGCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTA                                     <  SRR4302540.5131451/94‑1 (MQ=60)

                                                           GCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGtgcacccatctacgcgcctga                                    >  SRR4302540.6647294/1‑73 (MQ=60)

                                                           GCCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAA                                    <  SRR4302540.8884323/94‑1 (MQ=60)

                                                            CCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAG                                   <  SRR4302540.2845378/94‑1 (MQ=60)

                                                            CCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAG                                   <  SRR4302540.1742792/94‑1 (MQ=60)

                                                            CCACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAG                                   <  SRR4302540.4266219/94‑1 (MQ=60)

                                                              ACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGT                                 <  SRR4302540.9893330/94‑1 (MQ=60)

                                                              ACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGT                                 <  SRR4302540.9893332/94‑1 (MQ=60)

                                                              ACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGT                                 >  SRR4302540.6948441/1‑94 (MQ=60)

                                                              ACTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGT                                 >  SRR4302540.6948444/1‑94 (MQ=60)

                                                               CTGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTT                                >  SRR4302540.6639904/1‑94 (MQ=60)

                                                                ctTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTT                               <  SRR4302540.2835216/92‑1 (MQ=60)

                                                                TGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTT                               <  SRR4302540.10092249/94‑1 (MQ=60)

                                                                TGTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTT                               <  SRR4302540.4898250/94‑1 (MQ=60)

                                                                 GTGCCATTTGCGGATACTCCCTCAACGCCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTG                              <  SRR4302540.1004423/94‑1 (MQ=60)

                                                                 GTGCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTG                              <  SRR4302540.3899035/94‑1 (MQ=60)

                                                                   ctcttccgatctagcgcttTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCA                            <  SRR4302540.1766814/75‑1 (MQ=60)

                                                                   GCCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCA                            <  SRR4302540.6865065/94‑1 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGGCTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           <  SRR4302540.1688465/94‑1 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           <  SRR4302540.113373/94‑1 (MQ=60)

                                                                    CCATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAG                           >  SRR4302540.6701308/1‑94 (MQ=60)

                                                                     CATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGC                          >  SRR4302540.9790192/1‑94 (MQ=60)

                                                                     CATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGATGCACACCTTGCGGATCGCTTAAGGTTTGCAGC                          >  SRR4302540.9814038/1‑94 (MQ=60)

                                                                      ATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCC                         >  SRR4302540.5930846/1‑94 (MQ=60)

                                                                      ATTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCC                         >  SRR4302540.3457521/1‑94 (MQ=60)

                                                                       TTTGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCC                        <  SRR4302540.253222/94‑1 (MQ=60)

                                                                         TGCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCA                      <  SRR4302540.8500560/94‑1 (MQ=60)

                                                                          GCGGATGCTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAG                     <  SRR4302540.4362683/94‑1 (MQ=60)

                                                                          GCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAG                     <  SRR4302540.1646830/94‑1 (MQ=60)

                                                                          GCGGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAG                     <  SRR4302540.2019592/94‑1 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   <  SRR4302540.9937549/94‑1 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   <  SRR4302540.2532569/94‑1 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   <  SRR4302540.6147677/94‑1 (MQ=60)

                                                                            GGATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCG                   >  SRR4302540.5551816/1‑94 (MQ=60)

                                                                              ATACTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCC                 >  SRR4302540.7696118/1‑94 (MQ=60)

                                                                                 CTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCT              <  SRR4302540.2430601/94‑1 (MQ=60)

                                                                                 CTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCT              <  SRR4302540.9113768/94‑1 (MQ=60)

                                                                                 CTCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCT              >  SRR4302540.9117607/1‑94 (MQ=60)

                                                                                  TCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTA             >  SRR4302540.268969/1‑94 (MQ=60)

                                                                                  TCCCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTA             >  SRR4302540.8215948/1‑94 (MQ=60)

                                                                                    CCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACC           >  SRR4302540.7097586/1‑94 (MQ=60)

                                                                                    CCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACC           <  SRR4302540.2932837/94‑1 (MQ=60)

                                                                                    CCTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTCCACACCATGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACC           >  SRR4302540.3846406/1‑94 (MQ=60)

                                                                                     CTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCG          <  SRR4302540.9358714/94‑1 (MQ=60)

                                                                                     CTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCG          <  SRR4302540.4581731/94‑1 (MQ=60)

                                                                                     CTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCG          >  SRR4302540.522659/1‑94 (MQ=60)

                                                                                     CTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCG          >  SRR4302540.7424257/1‑94 (MQ=60)

                                                                                     CTCAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGATGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCG          >  SRR4302540.3436641/1‑94 (MQ=60)

                                                                                       CAACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGG        <  SRR4302540.581186/94‑1 (MQ=60)

                                                                                        AACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC       <  SRR4302540.9215939/94‑1 (MQ=60)

                                                                                        AACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC       >  SRR4302540.4164063/1‑94 (MQ=60)

                                                                                        AACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC       >  SRR4302540.6641020/1‑94 (MQ=60)

                                                                                        AACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGC       <  SRR4302540.7684116/94‑1 (MQ=60)

                                                                                         ACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC      <  SRR4302540.5595103/94‑1 (MQ=60)

                                                                                         ACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC      <  SRR4302540.6623634/94‑1 (MQ=60)

                                                                                         ACACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCC      <  SRR4302540.265925/94‑1 (MQ=60)

                                                                                          CACCGACTCACGCACCACTGGTGGAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCG     >  SRR4302540.1864276/1‑94 (MQ=60)

                                                                                          CACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGGTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGACG     >  SRR4302540.4815127/1‑94 (MQ=60)

                                                                                           ACCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGT    <  SRR4302540.6294957/94‑1 (MQ=60)

                                                                                            CCGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTC   >  SRR4302540.3708513/1‑94 (MQ=60)

                                                                                             CGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTCA  <  SRR4302540.919363/94‑1 (MQ=60)

AATGCTGGCATTCAGTTGCTGCAATGTTTTTGCATCGAGGCTGGCGAAGACTGGCTGTAGCCACTGTGCCATTTGCGGATACTCCCTCAACACGGACTCACGCACCACTGGTGCAGGCGCGTAGATAGGTTGCACACCTTGCGGATCGCTTAAGGTTTGCAGCCCCAGCGCCGCTACCGGGCCGTCA  >  NC_000913/2216653‑2216839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`