Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,392,487 |
T→C |
T194A (ACC→GCC) |
nuoL ← |
NADH dehydrogenase I chain L |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,392,487 | 0 | T | C | 99.6%
| 728.9
/ ‑4.8
| 230 | T194A (ACC→GCC) | nuoL | NADH dehydrogenase I chain L |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (126/103); total (127/103) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.00e-01 |
Only 100 of 240 total aligned reads displayed.
CCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > NC_000913/2392397‑2392576
|
ccAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGgcgc > 2:9041870/1‑93 (MQ=255)
ccAGCAACATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGgcgc > 2:9763734/1‑93 (MQ=255)
gcagcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCa > 1:7681429/1‑93 (MQ=255)
cagcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAg > 2:3508759/1‑93 (MQ=255)
agcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGt > 1:2110228/1‑93 (MQ=255)
agcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGt < 2:9186477/93‑1 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGtt < 1:2530560/93‑1 (MQ=255)
aTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCg > 2:2808060/1‑93 (MQ=255)
tCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGt > 2:5118797/1‑93 (MQ=255)
tCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGCGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGt > 1:2814708/1‑93 (MQ=255)
gTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTaa > 2:7298341/1‑93 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCATTGTAAAGaa < 2:9320186/93‑1 (MQ=255)
ccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAt > 1:5538820/1‑93 (MQ=255)
ccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAt > 1:378531/1‑93 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg > 1:5833864/1‑93 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg > 1:4644070/1‑93 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg < 1:5678034/93‑1 (MQ=255)
caTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGaa > 1:5788973/1‑93 (MQ=255)
caTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGaa < 2:4894453/93‑1 (MQ=255)
caTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGaa < 1:7774413/93‑1 (MQ=255)
caTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGaa < 1:4517610/93‑1 (MQ=255)
tCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACa < 1:6502096/93‑1 (MQ=255)
tCACCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAGTGACCa > 2:7655545/1‑93 (MQ=255)
cAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAg < 1:3606848/93‑1 (MQ=255)
cAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAg > 1:2670328/1‑93 (MQ=255)
cATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGc < 1:8000376/93‑1 (MQ=255)
cATGTGATGCCCGTCAGCAAAGCGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGc < 1:7183987/93‑1 (MQ=255)
aTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg > 2:2655510/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 2:9842706/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 2:9335392/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 1:990134/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 2:1959494/1‑93 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 2:5947817/93‑1 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTNAAGAATGAACAGTNTGAAAGc > 1:6534535/1‑93 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGc < 2:6401428/93‑1 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGc < 2:3232631/93‑1 (MQ=255)
ttGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCg > 1:592515/1‑93 (MQ=255)
gtGCCGTCAGCAAATTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCg < 1:1277293/92‑1 (MQ=255)
cGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGa < 1:2139389/93‑1 (MQ=255)
gTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGaa > 1:3174187/1‑93 (MQ=255)
gTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGaa > 2:3245064/1‑93 (MQ=255)
tCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAac > 1:8045484/1‑93 (MQ=255)
tCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAac > 1:4007515/1‑93 (MQ=255)
aGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAacac < 2:6798663/93‑1 (MQ=255)
aGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAacac < 2:614605/93‑1 (MQ=255)
aGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAacac < 2:2794461/93‑1 (MQ=255)
cAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGt < 1:7020576/93‑1 (MQ=255)
agaGTGCGGTGGTGCGAGTGCCACCATTGCGCGGAAGTTAAGGGGGCCCAGTTCGGTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTc < 1:238179/91‑1 (MQ=255)
aaGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCa > 2:393087/1‑93 (MQ=255)
aaGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCa > 1:1394877/1‑93 (MQ=255)
aaGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCa > 1:74244/1‑93 (MQ=255)
aGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAc > 1:1708492/1‑93 (MQ=255)
aGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAc < 1:8702074/93‑1 (MQ=255)
gTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAcc > 1:840517/1‑93 (MQ=255)
gTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAcc > 2:4439991/1‑93 (MQ=255)
gcgcTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCca < 2:7937155/93‑1 (MQ=255)
cgcTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCcac > 2:7352778/1‑93 (MQ=255)
gcTGGTGCCAGTTCCTCCATGTCGCTGAAGTGCGGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCcaca < 2:6029289/93‑1 (MQ=255)
cTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCacac > 1:8849493/1‑93 (MQ=255)
tGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACg < 1:9148101/93‑1 (MQ=255)
ggTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACgg > 1:4529680/1‑93 (MQ=255)
gTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACggg > 1:9559022/1‑93 (MQ=255)
tGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGt > 2:5018103/1‑93 (MQ=255)
ccAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCa > 1:9962572/1‑93 (MQ=255)
ccAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCa > 1:9753650/1‑93 (MQ=255)
cAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac > 2:7617327/1‑93 (MQ=255)
cAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac > 2:7182922/1‑93 (MQ=255)
cAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac < 1:9481086/93‑1 (MQ=255)
cAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac < 1:1845578/93‑1 (MQ=255)
aGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacg > 2:5564464/1‑93 (MQ=255)
gTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacga > 2:1408757/1‑93 (MQ=255)
ttCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacgac > 2:2963039/1‑93 (MQ=255)
ttCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacgac > 1:3241178/1‑93 (MQ=255)
ccaccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAcgacga > 1:844733/1‑93 (MQ=255)
ccaccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAcgacga > 2:1710118/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa > 1:1220914/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa < 2:8040562/93‑1 (MQ=255)
accaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAc < 2:228185/93‑1 (MQ=255)
accaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAc > 1:6660891/1‑93 (MQ=255)
ccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACg > 2:6003132/1‑93 (MQ=255)
ccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACg < 2:4040833/93‑1 (MQ=255)
caTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGc < 2:1848549/93‑1 (MQ=255)
caTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGc < 2:3353777/93‑1 (MQ=255)
aTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCt > 2:4591904/1‑93 (MQ=255)
aTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCt < 2:3087292/93‑1 (MQ=255)
ttCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCttt < 2:6553609/93‑1 (MQ=255)
cgcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCa < 2:8225182/93‑1 (MQ=255)
gcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 1:9286245/93‑1 (MQ=255)
gcgGAAGTGCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 2:109915/93‑1 (MQ=255)
cgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAtt < 1:9362374/93‑1 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGCACGCTTTCATTGc < 1:6717259/93‑1 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc < 1:222506/93‑1 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc > 1:6915563/1‑93 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc > 2:1586425/1‑93 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc < 2:5734144/93‑1 (MQ=255)
ttCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCt > 2:9384746/1‑93 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc > 1:489427/1‑93 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc > 1:3843368/1‑93 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc < 1:8348566/93‑1 (MQ=255)
aGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgcg > 1:5002597/1‑93 (MQ=255)
|
CCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > NC_000913/2392397‑2392576
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCATT > NC_000913/2392396‑2392580
|
CCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGC > SRR4302540.5730400/1‑94 (MQ=60)
CCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCC > SRR4302540.7368381/1‑94 (MQ=60)
AGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCA > SRR4302540.781943/1‑94 (MQ=60)
AGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCA > SRR4302540.7768408/1‑94 (MQ=60)
AGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCA > SRR4302540.2433077/1‑94 (MQ=60)
AGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCA > SRR4302540.1598615/1‑94 (MQ=60)
GCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAG < SRR4302540.10029032/94‑1 (MQ=60)
CAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGT > SRR4302540.2132877/1‑94 (MQ=60)
AGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTT < SRR4302540.6104185/94‑1 (MQ=60)
GCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTC < SRR4302540.2557867/94‑1 (MQ=60)
ATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGCGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGT > SRR4302540.2845116/1‑94 (MQ=60)
TCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT < SRR4302540.9584809/94‑1 (MQ=60)
TCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT > SRR4302540.8480578/1‑94 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302540.9775904/94‑1 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG > SRR4302540.8634290/1‑94 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302540.4596302/94‑1 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302540.2587891/94‑1 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302540.2587892/94‑1 (MQ=60)
AGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGT > SRR4302540.2359185/1‑94 (MQ=60)
AGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGT < SRR4302540.6996301/94‑1 (MQ=60)
CGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAA < SRR4302540.7961576/94‑1 (MQ=60)
TCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAG < SRR4302540.5921012/94‑1 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT > SRR4302540.5599826/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT > SRR4302540.3827018/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT > SRR4302540.382446/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT > SRR4302540.5799116/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT > SRR4302540.2250447/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302540.5898373/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302540.2158184/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302540.4693781/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302540.1739291/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302540.8518004/1‑94 (MQ=60)
CACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGA < SRR4302540.5740553/94‑1 (MQ=60)
ACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAA > SRR4302540.5852936/1‑94 (MQ=60)
CATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAAC < SRR4302540.7865298/94‑1 (MQ=60)
CATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAAC < SRR4302540.4566543/94‑1 (MQ=60)
CATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTCGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAAC < SRR4302540.4566542/94‑1 (MQ=60)
ATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACA > SRR4302540.5562544/1‑94 (MQ=60)
ATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACA < SRR4302540.9985802/94‑1 (MQ=60)
TCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAG > SRR4302540.2699251/1‑94 (MQ=60)
TCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAG < SRR4302540.6574372/94‑1 (MQ=60)
TCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAACTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAG < SRR4302540.9469030/94‑1 (MQ=60)
CAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGT < SRR4302540.3646259/94‑1 (MQ=60)
GCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGC > SRR4302540.1274287/1‑94 (MQ=60)
catgtgatgcCCGTCAGCAAAGCGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG < SRR4302540.7264074/84‑1 (MQ=60)
CATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG < SRR4302540.8093492/94‑1 (MQ=60)
CATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG > SRR4302540.3299654/1‑94 (MQ=60)
ATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGA > SRR4302540.1000240/1‑94 (MQ=60)
TGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAA > SRR4302540.8328175/1‑94 (MQ=60)
GTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAA > SRR4302540.4574982/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTNAAGAATGAACANTNCGAANGC > SRR4302540.6607065/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTNAAGAATGAACAGTNTGAAAGC > SRR4302540.6607066/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGC > SRR4302540.8840397/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGC > SRR4302540.2042331/1‑94 (MQ=60)
TATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGC > SRR4302540.8649766/1‑94 (MQ=60)
ATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCG < SRR4302540.7614093/94‑1 (MQ=60)
ATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCG > SRR4302540.598890/1‑94 (MQ=60)
GTGCCGTCAGCAAATTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGA < SRR4302540.1290459/94‑1 (MQ=60)
TGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAG < SRR4302540.9563676/94‑1 (MQ=60)
GCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGG < SRR4302540.6621678/94‑1 (MQ=60)
GCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGG > SRR4302540.9754749/1‑94 (MQ=60)
CCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGA < SRR4302540.8047140/94‑1 (MQ=60)
CGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAA < SRR4302540.2162381/94‑1 (MQ=60)
CGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAA > SRR4302540.3208693/1‑94 (MQ=60)
GTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAAC > SRR4302540.8138958/1‑94 (MQ=60)
GTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAAC > SRR4302540.4050661/1‑94 (MQ=60)
GTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAAA > SRR4302540.2973832/1‑94 (MQ=60)
TCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACA > SRR4302540.4638934/1‑94 (MQ=60)
CAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACAC < SRR4302540.4778347/94‑1 (MQ=60)
AGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTTCGAAAGCGAGGAACACG > SRR4302540.9082907/1‑94 (MQ=60)
GCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGT > SRR4302540.6883820/1‑94 (MQ=60)
CAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTC < SRR4302540.7098551/94‑1 (MQ=60)
CAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTC < SRR4302540.7098550/94‑1 (MQ=60)
CAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTC > SRR4302540.3908490/1‑94 (MQ=60)
AGAGTGCGGTGGTGCGAGTGCCACCATTGCGCGGAAGTTAAGGGGGCCCAGTTCGGTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCA < SRR4302540.240491/94‑1 (MQ=60)
AAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCA > SRR4302540.1409833/1‑94 (MQ=60)
AAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCA > SRR4302540.75014/1‑94 (MQ=60)
AAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCA > SRR4302540.1409834/1‑94 (MQ=60)
AAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAC > SRR4302540.1726952/1‑94 (MQ=60)
AGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACC > SRR4302540.849435/1‑94 (MQ=60)
AGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACC < SRR4302540.8803084/94‑1 (MQ=60)
GCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCAC > SRR4302540.5868507/1‑94 (MQ=60)
CGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACA > SRR4302540.8138900/1‑94 (MQ=60)
GCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACAC > SRR4302540.8951873/1‑94 (MQ=60)
GCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACAC < SRR4302540.8185318/94‑1 (MQ=60)
CTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACG > SRR4302540.6639348/1‑94 (MQ=60)
TGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGG > SRR4302540.4578716/1‑94 (MQ=60)
TGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGG < SRR4302540.9257962/94‑1 (MQ=60)
GGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGG > SRR4302540.9672042/1‑94 (MQ=60)
GCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCA > SRR4302540.10078811/1‑94 (MQ=60)
GCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCA > SRR4302540.9868088/1‑94 (MQ=60)
CAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACG < SRR4302540.9593516/94‑1 (MQ=60)
CAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACG < SRR4302540.1865801/94‑1 (MQ=60)
GTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGAC > SRR4302540.3276449/1‑94 (MQ=60)
GTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGAC < SRR4302540.2739587/94‑1 (MQ=60)
TCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGA > SRR4302540.853696/1‑94 (MQ=60)
CCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAA > SRR4302540.1233409/1‑94 (MQ=60)
CACCATTTCGCGGAAGTTCAGGGCGCCCAGTTGGTTGTAAAGAATGAACAGTGTGCAAGCGAGGAACACGTCACCCCAACGGGTCACGACGAAG > SRR4302540.5271107/1‑94 (MQ=60)
CACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAC > SRR4302540.6734534/1‑94 (MQ=60)
CCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGC > SRR4302540.7179872/1‑94 (MQ=60)
TTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTT > SRR4302540.2088949/1‑94 (MQ=60)
TCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCA < SRR4302540.1639476/94‑1 (MQ=60)
CGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAT < SRR4302540.2166416/94‑1 (MQ=60)
CGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAT < SRR4302540.10100233/94‑1 (MQ=60)
CGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGAGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAT < SRR4302540.5557417/94‑1 (MQ=60)
GCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATT < SRR4302540.320609/94‑1 (MQ=60)
GCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATT < SRR4302540.3723011/94‑1 (MQ=60)
GCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATT < SRR4302540.9397218/94‑1 (MQ=60)
GCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATT < SRR4302540.3263/94‑1 (MQ=60)
CGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTG < SRR4302540.9473864/94‑1 (MQ=60)
GGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGC > SRR4302540.6992515/1‑94 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGCACGCTTTCATTGCC < SRR4302540.6791367/94‑1 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGCACGCTTTCATTGCC < SRR4302540.6791366/94‑1 (MQ=60)
GAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCC < SRR4302540.224659/94‑1 (MQ=60)
AAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCG < SRR4302540.9599151/94‑1 (MQ=60)
AGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGC > SRR4302540.3690924/1‑94 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAGAGCGAGGAACACGGCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302540.4245943/94‑1 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302540.7463407/94‑1 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT > SRR4302540.4344989/1‑94 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302540.5035790/94‑1 (MQ=60)
TTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTG > SRR4302540.5767286/1‑94 (MQ=60)
TCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGC > SRR4302540.494667/1‑94 (MQ=60)
TCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGC > SRR4302540.3885167/1‑94 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACCGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302540.932607/94‑1 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG > SRR4302540.5056770/1‑94 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302540.8445463/94‑1 (MQ=60)
AGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > SRR4302540.6064470/1‑94 (MQ=60)
AGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > SRR4302540.9251733/1‑94 (MQ=60)
GGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCA < SRR4302540.2014552/94‑1 (MQ=60)
GCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCAT < SRR4302540.1085044/94‑1 (MQ=60)
CGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCATT > SRR4302540.4849451/1‑94 (MQ=60)
|
CCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCATT > NC_000913/2392396‑2392580
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
