Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,748,983 |
T→C |
A44A (GCT→GCC) |
yfjB → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,748,983 | 0 | T | C | 99.4%
| 1134.1
/ ‑5.7
| 353 | A44A (GCT→GCC) | yfjB | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (160/191); minor base A (2/0); total (162/191) |
| Fisher's exact test for biased strand distribution p-value = 2.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 365 total aligned reads displayed.
ACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCTCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGG > NC_000913/2748893‑2749072
|
aCGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCa < 2:3843292/93‑1 (MQ=255)
aCGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCa < 1:5234920/93‑1 (MQ=255)
cGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCAc < 1:5359161/93‑1 (MQ=255)
cGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCAc < 2:7457809/93‑1 (MQ=255)
cGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCAc < 2:9189097/93‑1 (MQ=255)
cACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGaa < 2:7181162/93‑1 (MQ=255)
cACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGaa < 1:5619719/93‑1 (MQ=255)
cACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGaa < 1:9971708/93‑1 (MQ=255)
cACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGCTGAGCAACAAATCGCCCACGaa < 2:6405316/93‑1 (MQ=255)
cACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACAAGGTCATCGTTGAGCAACAAATCGCCCACGaa < 1:8048783/93‑1 (MQ=255)
cccccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAc < 2:2271092/92‑1 (MQ=255)
cccccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAc < 2:8327069/92‑1 (MQ=255)
aCCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAc > 2:4263745/1‑93 (MQ=255)
ccccACTGCACTGACAACACATGAAATGCTCTACTGCTGGCTGTGCACAAAAGGTTACGAGGGCATCGCTGAGCAACAGATCGCCCACGCACt > 2:6950238/1‑93 (MQ=255)
ccccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACt < 1:9731296/93‑1 (MQ=255)
ccccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACt < 2:6134170/93‑1 (MQ=255)
cccACTGCCCTGACACCACATGAAATGATCTACCGCTGGCTGTGCGCAAAAGGTTACGAGGTCATCGTTGGGCAACAAATGGCCCCCGAACtc > 1:8421576/1‑92 (MQ=255)
cccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTg > 1:7320304/1‑93 (MQ=255)
cccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTg < 2:8893682/93‑1 (MQ=255)
ccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGc < 1:1855731/93‑1 (MQ=255)
ccACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGc > 1:8776254/1‑93 (MQ=255)
tgcactgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACt < 2:1049763/93‑1 (MQ=255)
tgcactgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACt > 1:3012038/1‑93 (MQ=255)
tgcactgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACt > 2:4922238/1‑93 (MQ=255)
tgcactgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGCTACGAGGTCATCGTTGAGCAACACATCGCCCACGAACTGCCACt > 1:3278525/1‑93 (MQ=255)
cactgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGGGCAACAAATCGCCCACGAACTGCAACTga < 1:7118066/93‑1 (MQ=255)
cactgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTga > 2:82624/1‑93 (MQ=255)
actgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaa < 1:1686555/93‑1 (MQ=255)
actgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaa < 2:4012922/93‑1 (MQ=255)
ctgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaag < 2:4744720/93‑1 (MQ=255)
ctgACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaaa > 1:1981902/1‑92 (MQ=255)
gACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaagaa < 2:1780183/93‑1 (MQ=255)
gACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaagaa > 1:5741089/1‑93 (MQ=255)
gACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTgaagaa > 1:5405193/1‑93 (MQ=255)
acaacaCATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAAt < 2:239542/93‑1 (MQ=255)
acaTGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGaa < 1:367975/93‑1 (MQ=255)
acaTGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGaa < 2:2632887/93‑1 (MQ=255)
acaTGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGaa > 1:2158418/1‑93 (MQ=255)
caTGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGaaa > 1:9827246/1‑93 (MQ=255)
aTGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGaaaa > 2:8179465/1‑93 (MQ=255)
tGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAAc > 1:751181/1‑93 (MQ=255)
tGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAAc > 2:2033142/1‑93 (MQ=255)
aaaTGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTg < 2:9585419/93‑1 (MQ=255)
aaTGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTgg < 1:6895643/93‑1 (MQ=255)
aTGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGc > 2:5410322/1‑93 (MQ=255)
tGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCa < 2:8499798/93‑1 (MQ=255)
agCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCa < 2:3602085/92‑1 (MQ=255)
tctACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGc < 2:5503754/93‑1 (MQ=255)
ctACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCt > 2:2996872/1‑93 (MQ=255)
tACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTc > 2:5607947/1‑93 (MQ=255)
tACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTc < 2:2681165/93‑1 (MQ=255)
ccGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTcgc > 1:5878290/1‑93 (MQ=255)
ccGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTcgc > 2:7922197/1‑93 (MQ=255)
ctggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCACCAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGga > 1:2710829/1‑93 (MQ=255)
ctggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGga < 2:8033652/93‑1 (MQ=255)
ctggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGga < 2:2176370/93‑1 (MQ=255)
tggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGgag > 2:171492/1‑93 (MQ=255)
tggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGgag > 1:6823663/1‑93 (MQ=255)
ggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGgaga < 1:2537006/93‑1 (MQ=255)
ggctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGgaga < 1:4600251/93‑1 (MQ=255)
gctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAt > 1:4336302/1‑93 (MQ=255)
gctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAt < 2:6907477/93‑1 (MQ=255)
ctgTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAtt < 1:314711/93‑1 (MQ=255)
gtgCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTgg < 1:100029/93‑1 (MQ=255)
gtgCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTgg < 1:9233296/93‑1 (MQ=255)
tgCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTggg < 1:6459422/93‑1 (MQ=255)
gCACAAAAGGTGACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGc < 2:3224642/93‑1 (MQ=255)
acaAGAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCaa < 1:7744261/93‑1 (MQ=255)
acaAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCaa < 1:1345661/93‑1 (MQ=255)
caAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAAc < 2:4467652/93‑1 (MQ=255)
caAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAAc > 1:4953268/1‑93 (MQ=255)
aaaaGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACt > 2:1385029/1‑93 (MQ=255)
aGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGc < 2:9512883/93‑1 (MQ=255)
tACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGAt < 1:728078/93‑1 (MQ=255)
gAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGAtctc < 2:3103311/93‑1 (MQ=255)
gAGGTCATCGTTGAGCAACAAATCGCACACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTAGCGGAGATTGGGCAACTAGCTGAtatc > 2:2506002/1‑93 (MQ=255)
aGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTcg > 1:8704477/1‑93 (MQ=255)
ggTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTcgc < 2:6568899/93‑1 (MQ=255)
ggTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTcgc > 1:4798029/1‑93 (MQ=255)
ggTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTcgc < 2:5297397/93‑1 (MQ=255)
gTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTcgcg < 2:975947/93‑1 (MQ=255)
cATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGt < 1:6601529/93‑1 (MQ=255)
cATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGt < 1:2428750/93‑1 (MQ=255)
cATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACACTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGt < 2:7599957/93‑1 (MQ=255)
aTCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTa < 1:9636023/93‑1 (MQ=255)
aTCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTa < 1:9162394/93‑1 (MQ=255)
tCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAg > 1:9137479/1‑93 (MQ=255)
ttGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCg > 1:9534218/1‑93 (MQ=255)
tGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGt > 2:9253617/1‑93 (MQ=255)
tGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGt < 2:3913862/93‑1 (MQ=255)
aGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTtg < 1:162797/93‑1 (MQ=255)
gCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTtgg > 2:7328546/1‑93 (MQ=255)
aacaaATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTtggtg < 2:1877587/93‑1 (MQ=255)
caaATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTggcggc > 2:9368534/1‑93 (MQ=255)
caaATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGc < 1:3992524/93‑1 (MQ=255)
aaaTCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCg < 2:577344/93‑1 (MQ=255)
aaaTCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCg > 2:9408911/1‑93 (MQ=255)
aaTCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGa < 1:6243298/93‑1 (MQ=255)
aTCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGAc < 2:659653/93‑1 (MQ=255)
tCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACg < 2:5009984/93‑1 (MQ=255)
|
ACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCTCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGG > NC_000913/2748893‑2749072
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCTCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAAT > NC_000913/2748891‑2749076
|
CCACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCC < SRR4302540.4033935/94‑1 (MQ=60)
CACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCA < SRR4302540.4698078/94‑1 (MQ=60)
ACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCAC < SRR4302540.1937742/94‑1 (MQ=60)
ACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCAC < SRR4302540.5292028/94‑1 (MQ=60)
CGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACG < SRR4302540.5418021/94‑1 (MQ=60)
CGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACG < SRR4302540.9523375/94‑1 (MQ=60)
CGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATAGTTGAGCAACAAATCGCCCACG > SRR4302540.9782404/1‑94 (MQ=60)
CACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAC < SRR4302540.1900308/94‑1 (MQ=60)
CACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAC < SRR4302540.9318747/94‑1 (MQ=60)
CACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAC < SRR4302540.5681551/94‑1 (MQ=60)
CACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAC > SRR4302540.6807757/1‑94 (MQ=60)
CACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAAC < SRR4302540.10088024/94‑1 (MQ=60)
CACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACAAGGTCATCGTTGAGCAACAAATCGCCCACGAAC < SRR4302540.8142276/94‑1 (MQ=60)
ACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACT > SRR4302540.8600402/1‑94 (MQ=60)
ACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACC > SRR4302540.6721054/1‑94 (MQ=60)
CCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTG > SRR4302540.7402062/1‑94 (MQ=60)
CCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTG < SRR4302540.9845564/94‑1 (MQ=60)
CCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTG > SRR4302540.8519033/1‑94 (MQ=60)
CCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTG > SRR4302540.9865184/1‑94 (MQ=60)
CCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGC > SRR4302540.8877907/1‑94 (MQ=60)
CCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCA < SRR4302540.1876085/94‑1 (MQ=60)
CCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCA > SRR4302540.9648554/1‑94 (MQ=60)
CCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCA > SRR4302540.1008305/1‑94 (MQ=60)
CACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAA < SRR4302540.6580480/94‑1 (MQ=60)
CACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAA < SRR4302540.8979938/94‑1 (MQ=60)
ACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAAC < SRR4302540.7685418/94‑1 (MQ=60)
ACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAAC > SRR4302540.2875455/1‑94 (MQ=60)
ACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAAC > SRR4302540.9781728/1‑94 (MQ=60)
ACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAAC < SRR4302540.8065132/94‑1 (MQ=60)
ACTGCACTGACAACACATGAAAGTCTCTACCGCTGGGTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAAAAAATCGCACACGAACTGCAAT > SRR4302540.1845066/1‑94 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACT < SRR4302540.9250465/94‑1 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACT < SRR4302540.5814014/94‑1 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACT > SRR4302540.666694/1‑94 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACT > SRR4302540.3045167/1‑94 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACT > SRR4302540.3858578/1‑94 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACT < SRR4302540.5762286/94‑1 (MQ=60)
CTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGCTACGAGGTCATCGTTGAGCAACACATCGCCCACGAACTGCCACT > SRR4302540.3314334/1‑94 (MQ=60)
TGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTG > SRR4302540.9740329/1‑94 (MQ=60)
GCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGA < SRR4302540.33898/94‑1 (MQ=60)
CACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGGGCAACAAATCGCCCACGAACTGCAACTGAA < SRR4302540.7197307/94‑1 (MQ=60)
CACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAA < SRR4302540.1869162/94‑1 (MQ=60)
CACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAA > SRR4302540.4956360/1‑94 (MQ=60)
CACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGCCATCGTTGAGCAACAAATCGCCCACGCACTGCAACTGTA > SRR4302540.7571245/1‑94 (MQ=60)
ACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAG > SRR4302540.145150/1‑94 (MQ=60)
ACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAG < SRR4302540.1704849/94‑1 (MQ=60)
ACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAA > SRR4302540.2003395/1‑94 (MQ=60)
TGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAA > SRR4302540.5464620/1‑94 (MQ=60)
TGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAA > SRR4302540.4382825/1‑94 (MQ=60)
TGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAA > SRR4302540.5804371/1‑94 (MQ=60)
GACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAAT < SRR4302540.2606465/94‑1 (MQ=60)
GACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAAT < SRR4302540.2059979/94‑1 (MQ=60)
GACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAAT < SRR4302540.5156625/94‑1 (MQ=60)
ACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATG > SRR4302540.10039032/1‑94 (MQ=60)
ACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATG < SRR4302540.4026773/94‑1 (MQ=60)
CAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCATGAACTGCAACTGAAGAATGT < SRR4302540.746157/94‑1 (MQ=60)
CAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGT < SRR4302540.1986078/94‑1 (MQ=60)
CAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGT < SRR4302540.5464038/94‑1 (MQ=60)
CAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGT > SRR4302540.2442345/1‑94 (MQ=60)
CAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGT > SRR4302540.5194759/1‑94 (MQ=60)
AACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTG < SRR4302540.5863908/94‑1 (MQ=60)
AACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTG > SRR4302540.8586594/1‑94 (MQ=60)
ACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGA > SRR4302540.7434398/1‑94 (MQ=60)
CACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAA > SRR4302540.2181661/1‑94 (MQ=60)
ACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAA > SRR4302540.7018749/1‑94 (MQ=60)
ACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAA > SRR4302540.9942200/1‑94 (MQ=60)
ACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAA < SRR4302540.371767/94‑1 (MQ=60)
ATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAAC > SRR4302540.759182/1‑94 (MQ=60)
ATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAAC > SRR4302540.6387151/1‑94 (MQ=60)
ATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAAC < SRR4302540.9103847/94‑1 (MQ=60)
ATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAAC < SRR4302540.3147286/94‑1 (MQ=60)
ATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCACACGAACTGCAACTGAAGAATGTGAAAAC > SRR4302540.6247974/1‑94 (MQ=60)
TGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACT < SRR4302540.420912/94‑1 (MQ=60)
TGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACT < SRR4302540.2465280/94‑1 (MQ=60)
AATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGC < SRR4302540.6972173/94‑1 (MQ=60)
AATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGC < SRR4302540.5458693/94‑1 (MQ=60)
ATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCA < SRR4302540.9865652/94‑1 (MQ=60)
TGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCAC < SRR4302540.95162/94‑1 (MQ=60)
TGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCAC < SRR4302540.991933/94‑1 (MQ=60)
TGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCAC < SRR4302540.7365822/94‑1 (MQ=60)
CTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGC > SRR4302540.6463980/1‑94 (MQ=60)
TCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCT > SRR4302540.8876392/1‑94 (MQ=60)
CTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTC > SRR4302540.7169492/1‑94 (MQ=60)
CTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTC > SRR4302540.7169493/1‑94 (MQ=60)
CTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTC > SRR4302540.2768937/1‑94 (MQ=60)
ACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGC > SRR4302540.5943264/1‑94 (MQ=60)
ACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGC > SRR4302540.4709473/1‑94 (MQ=60)
ACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCGCGC > SRR4302540.923473/1‑94 (MQ=60)
CCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCG > SRR4302540.9803900/1‑94 (MQ=60)
CGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGG > SRR4302540.53532/1‑94 (MQ=60)
CGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGG < SRR4302540.4727500/94‑1 (MQ=60)
GCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCACCAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGA > SRR4302540.2740061/1‑94 (MQ=60)
GCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGA > SRR4302540.7306160/1‑94 (MQ=60)
CTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAG > SRR4302540.1787029/1‑94 (MQ=60)
CTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAG > SRR4302540.6899203/1‑94 (MQ=60)
TGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGA > SRR4302540.6255860/1‑94 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT < SRR4302540.2564363/94‑1 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT < SRR4302540.8316704/94‑1 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT < SRR4302540.6901602/94‑1 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT > SRR4302540.3164137/1‑94 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT < SRR4302540.1127769/94‑1 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT > SRR4302540.4383508/1‑94 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT < SRR4302540.4649693/94‑1 (MQ=60)
GGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGAT < SRR4302540.4405220/94‑1 (MQ=60)
CTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTG < SRR4302540.317845/94‑1 (MQ=60)
TGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGG > SRR4302540.1386428/1‑94 (MQ=60)
GTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGG < SRR4302540.9343949/94‑1 (MQ=60)
GTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGG < SRR4302540.101091/94‑1 (MQ=60)
GTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGG > SRR4302540.6916703/1‑94 (MQ=60)
TGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGC < SRR4302540.7771890/94‑1 (MQ=60)
TGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGC < SRR4302540.6531319/94‑1 (MQ=60)
GCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCA > SRR4302540.5372035/1‑94 (MQ=60)
CACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAA < SRR4302540.5486704/94‑1 (MQ=60)
CACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAA > SRR4302540.1382012/1‑94 (MQ=60)
CACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAA > SRR4302540.10139053/1‑94 (MQ=60)
ACAAGAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAAC < SRR4302540.7834680/94‑1 (MQ=60)
ACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAAC < SRR4302540.1359790/94‑1 (MQ=60)
ACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAAC > SRR4302540.5006787/1‑94 (MQ=60)
ACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAAC > SRR4302540.6593782/1‑94 (MQ=60)
AAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTA < SRR4302540.9316787/94‑1 (MQ=60)
AAGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGC > SRR4302540.5838645/1‑94 (MQ=60)
AGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCT < SRR4302540.5791938/94‑1 (MQ=60)
AGGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCT < SRR4302540.4879337/94‑1 (MQ=60)
GTTTACGAGTTCATCGTTGAGCAACAAATCGCTCACTAACTGCAACTGAAGAATGTGAAAGCTGGCACGCTCGCGGAGATTGGGCAACTAGCTG < SRR4302540.6186360/94‑1 (MQ=60)
GGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTG > SRR4302540.6764074/1‑94 (MQ=60)
GGTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTG < SRR4302540.334312/94‑1 (MQ=60)
GTTACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTGGCTGA > SRR4302540.287875/1‑94 (MQ=60)
TACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATC < SRR4302540.7292183/94‑1 (MQ=60)
TACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATC < SRR4302540.735876/94‑1 (MQ=60)
TACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATC < SRR4302540.8820881/94‑1 (MQ=60)
TACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATC < SRR4302540.5523113/94‑1 (MQ=60)
ACGAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCT > SRR4302540.8440685/1‑94 (MQ=60)
GAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGCTTGGGCAACTAGCTGATCTCG > SRR4302540.8805218/1‑94 (MQ=60)
GAGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCG > SRR4302540.8805515/1‑94 (MQ=60)
AGGTCATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGC > SRR4302540.4849375/1‑94 (MQ=60)
CATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTA < SRR4302540.4624689/94‑1 (MQ=60)
CATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTA < SRR4302540.2454917/94‑1 (MQ=60)
CATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTA < SRR4302540.6674631/94‑1 (MQ=60)
CATCGTTGAGCAACAAATCGCCCACGAACGGCAACTGAAGAATGTGAAAACTGGCCCGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTA < SRR4302540.1688295/94‑1 (MQ=60)
ATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAG > SRR4302540.9247276/1‑94 (MQ=60)
ATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAG > SRR4302540.4393478/1‑94 (MQ=60)
ATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAG > SRR4302540.2397136/1‑94 (MQ=60)
ATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAG < SRR4302540.9272352/94‑1 (MQ=60)
ATCGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAG < SRR4302540.9749549/94‑1 (MQ=60)
CGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTC < SRR4302540.267941/94‑1 (MQ=60)
CGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTC > SRR4302540.4713315/1‑94 (MQ=60)
CGTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGGAGTC > SRR4302540.2491891/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTCGTCG > SRR4302540.1654712/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCG > SRR4302540.7370578/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCG > SRR4302540.3259391/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCG > SRR4302540.9398695/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCG > SRR4302540.10080515/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCG > SRR4302540.9647084/1‑94 (MQ=60)
GTTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGCCAACTAGCTGATCTCCCGGTAGTCG > SRR4302540.3259390/1‑94 (MQ=60)
TTGAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGT > SRR4302540.3068653/1‑94 (MQ=60)
GAGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTG < SRR4302540.7203518/94‑1 (MQ=60)
AGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGG < SRR4302540.2518291/94‑1 (MQ=60)
AGCAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGG < SRR4302540.164429/94‑1 (MQ=60)
CAACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTG < SRR4302540.2092989/94‑1 (MQ=60)
AACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGG > SRR4302540.3339168/1‑94 (MQ=60)
ACAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGC < SRR4302540.537950/94‑1 (MQ=60)
CAAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCG < SRR4302540.4035491/94‑1 (MQ=60)
AAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGA > SRR4302540.2205759/1‑94 (MQ=60)
AAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGA > SRR4302540.5520262/1‑94 (MQ=60)
AAATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGGGGCGA > SRR4302540.5106513/1‑94 (MQ=60)
AATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGAC < SRR4302540.7848377/94‑1 (MQ=60)
AATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGAC < SRR4302540.6312778/94‑1 (MQ=60)
AATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGAC < SRR4302540.9132673/94‑1 (MQ=60)
AATCGCCCACGAACTGCAACTGAAGAATGCGAAAACTGGGACGCTCGCGTAGGTTGGGAAACGAGCGTATCTCGCGGTAGGCGTTGGTGGgcac > SRR4302540.4026991/1‑90 (MQ=35)
ATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACG < SRR4302540.9271545/94‑1 (MQ=60)
ATCGCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACG < SRR4302540.3944893/94‑1 (MQ=60)
GCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTA > SRR4302540.2303458/1‑94 (MQ=60)
GCCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTA < SRR4302540.3994693/94‑1 (MQ=60)
CCCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAATTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAA > SRR4302540.3134350/1‑94 (MQ=60)
CCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAAT > SRR4302540.9717791/1‑94 (MQ=60)
CCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAAT > SRR4302540.3760616/1‑94 (MQ=60)
CCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAAT > SRR4302540.3769792/1‑94 (MQ=60)
CCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAAT > SRR4302540.3769793/1‑94 (MQ=60)
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CCACGGCACCCCACTGCACTGACAACACATGAAATGCTCTACCGCTGGCTGTGCACAAAAGGTTACGAGGTCATCGTTGAGCAACAAATCGCTCACGAACTGCAACTGAAGAATGTGAAAACTGGCACGCTCGCGGAGATTGGGCAACTAGCTGATCTCGCGGTAGTCGTTGGTGGCGACGGTAAT > NC_000913/2748891‑2749076
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
