Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,774,233	T→C	G98G (GGT→GGC)	yfjX →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,774,233	0	T	C	99.6%	830.8 / NA	263	G98G (GGT→GGC)	yfjX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (151/111); minor base A (1/0); total (152/111)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 289 total aligned reads displayed.

TTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC  >  NC_000913/2774143‑2774322

ttACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGgcgc                                                                                         >  1:1105398/1‑93 (MQ=255)

   cacGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGGGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGa                                                                                      >  1:3514970/1‑93 (MQ=255)

      gCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAAt                                                                                   <  2:1709518/93‑1 (MQ=255)

       cTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATg                                                                                  <  2:7227515/93‑1 (MQ=255)

       cTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATg                                                                                  <  2:3146936/93‑1 (MQ=255)

       cTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATg                                                                                  <  2:286058/93‑1 (MQ=255)

          aGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAgc                                                                               >  2:3816691/1‑93 (MQ=255)

              aTGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCgg                                                                           >  1:231585/1‑93 (MQ=255)

              aTGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCgg                                                                           >  1:3309360/1‑93 (MQ=255)

               tGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGa                                                                          >  2:6192699/1‑93 (MQ=255)

                    gAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCg                                                                     >  2:4829273/1‑93 (MQ=255)

                    gAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCg                                                                     >  1:7102900/1‑93 (MQ=255)

                     aGCGTTTACGGCCCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGc                                                                    <  1:2551095/93‑1 (MQ=255)

                      gCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCa                                                                   >  2:1092088/1‑93 (MQ=255)

                      gCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCa                                                                   <  1:9538237/93‑1 (MQ=255)

                      gCGTTTATGGCTCCTGATGCTGACGGTGACGATAAAGGGCATTTGCTCAACGACAGAAATGGCAAGGGCGCGGAAATGAGCGCGGAAGCCGCa                                                                   <  2:1164394/93‑1 (MQ=255)

                       cGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAg                                                                  <  2:2210673/93‑1 (MQ=255)

                       cGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAg                                                                  <  1:6822907/93‑1 (MQ=255)

                        gTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAgg                                                                 <  1:8588918/93‑1 (MQ=255)

                        gTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAgg                                                                 <  2:6239719/93‑1 (MQ=255)

                         tttATGGCTCCTGTTGCTGACGGTGACGATAAATGGCATTTGCTCCTTGGCACGAATGGCAATGGCACGGAAATTAGCGCCGAAACCGCCggg                                                                >  2:9745566/1‑92 (MQ=255)

                         tttATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGCGCGCGGAAGCCGCAgga                                                                >  2:5390112/1‑92 (MQ=255)

                         tttATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGt                                                                >  2:5293409/1‑93 (MQ=255)

                          ttATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTa                                                               <  2:2014198/93‑1 (MQ=255)

                          ttATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTa                                                               >  1:1505930/1‑93 (MQ=255)

                             gggCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGGATCg                                                            >  2:8965588/2‑93 (MQ=255)

                              ggCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGc                                                           <  2:5589521/93‑1 (MQ=255)

                              ggCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGc                                                           <  2:3288014/93‑1 (MQ=255)

                               gCTCCTGATGCTGACGGTAACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCt                                                          <  2:4939540/93‑1 (MQ=255)

                                cTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTg                                                         >  1:4912622/1‑93 (MQ=255)

                                 tCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGt                                                        >  2:9390760/1‑93 (MQ=255)

                                  ccTGATGCTGACGGTGACGATAAATGGCATTTGCTCACCGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTc                                                       <  1:5602785/93‑1 (MQ=255)

                                  ccTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTc                                                       <  1:5538600/93‑1 (MQ=255)

                                     gATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGc                                                    >  2:4522645/1‑93 (MQ=255)

                                     gATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGc                                                    >  2:1907675/1‑93 (MQ=255)

                                       tGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCt                                                  <  2:8094550/93‑1 (MQ=255)

                                        gCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTg                                                 >  2:5141846/1‑93 (MQ=255)

                                         cTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGa                                                <  1:1211766/93‑1 (MQ=255)

                                          tGACGGTGACGATAAATGGCATTTGCTGAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGGTGTCTGCCTGAt                                               >  1:6338846/1‑93 (MQ=255)

                                          tGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGAt                                               >  2:577487/1‑93 (MQ=255)

                                              ggTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGaa                                           <  2:7573356/93‑1 (MQ=255)

                                              ggTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGaa                                           <  1:6499283/93‑1 (MQ=255)

                                               gTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAat                                          <  2:6169522/93‑1 (MQ=255)

                                               gTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAat                                          <  1:5315302/93‑1 (MQ=255)

                                                tGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAata                                         <  2:639488/93‑1 (MQ=255)

                                                tGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAata                                         <  2:7277287/93‑1 (MQ=255)

                                                tGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAata                                         <  2:4711331/93‑1 (MQ=255)

                                                tGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAata                                         >  2:2530728/1‑93 (MQ=255)

                                                 gACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAatat                                        >  2:2916061/1‑93 (MQ=255)

                                                  aCGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAAtata                                       >  1:7336506/1‑93 (MQ=255)

                                                  aCGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAAtata                                       <  2:1871291/93‑1 (MQ=255)

                                                  aCGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAAtata                                       <  1:3659139/93‑1 (MQ=255)

                                                  aCGATAAATGGCATTTCCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAAtata                                       <  2:1332849/93‑1 (MQ=255)

                                                    gATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGc                                     >  2:8672242/1‑93 (MQ=255)

                                                    gATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGc                                     >  2:3615430/1‑93 (MQ=255)

                                                    gATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGc                                     >  1:7218030/1‑93 (MQ=255)

                                                     aTAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGcc                                    >  2:7876425/1‑93 (MQ=255)

                                                      tAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCa                                   <  2:2282475/93‑1 (MQ=255)

                                                      tAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCa                                   >  1:3133382/1‑93 (MQ=255)

                                                      tAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCa                                   >  1:10000018/1‑93 (MQ=255)

                                                       aaaTGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCAt                                  >  2:5799071/1‑93 (MQ=255)

                                                        aaTGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATc                                 >  2:1408025/1‑93 (MQ=255)

                                                        aaTGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATc                                 >  1:4237896/1‑93 (MQ=255)

                                                         aTGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCa                                <  1:9657454/93‑1 (MQ=255)

                                                         aTGGCAGTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCa                                <  1:8333043/93‑1 (MQ=255)

                                                          tGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCAtaaa                               >  1:8082985/1‑90 (MQ=255)

                                                          tGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCAc                               >  1:7423019/1‑93 (MQ=255)

                                                             cATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACgcc                            >  2:9110419/1‑93 (MQ=255)

                                                              aTTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACgcct                           >  2:3014534/1‑93 (MQ=255)

                                                              aTTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACgcct                           <  2:8254622/93‑1 (MQ=255)

                                                              aTTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACgcct                           <  2:3733873/93‑1 (MQ=255)

                                                              aTTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACgact                           >  1:9422851/1‑93 (MQ=255)

                                                               tttGCTCAACGGCATGAATGGCAATGGCCCGGAAATGAGCGCGGAAGCCGCAGGGATGGCTGTCTGGCTGCTTCAATATAGCCATCACccctg                          >  2:857417/1‑93 (MQ=255)

                                                                  gCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACgcctgcct                       <  1:771001/93‑1 (MQ=255)

                                                                  gCTCAACGGCACGAATGCGATGGGCGACGAAAAGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCTTGATTGATTATAGCCATCACgcctgcct                       <  2:3923802/93‑1 (MQ=255)

                                                                    tCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCa                     >  1:9337036/1‑93 (MQ=255)

                                                                    tCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCa                     <  1:8013834/93‑1 (MQ=255)

                                                                    ccAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCa                     <  1:2199008/92‑1 (MQ=255)

                                                                     cAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCAc                    <  1:8380096/93‑1 (MQ=255)

                                                                     cAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCAc                    <  1:434786/93‑1 (MQ=255)

                                                                       aCGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCg                  <  1:2402938/93‑1 (MQ=255)

                                                                         ggCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGaa                <  1:7823408/93‑1 (MQ=255)

                                                                         ggCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGaa                >  2:8018615/1‑93 (MQ=255)

                                                                          gCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAAt               >  1:664147/1‑93 (MQ=255)

                                                                           cATGAGTGGCAGTGGCGCGGAGATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATg              <  1:8958484/93‑1 (MQ=37)

                                                                           cATGAAGGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATg              <  1:3022902/93‑1 (MQ=255)

                                                                            aTGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGc             >  1:1730558/1‑93 (MQ=255)

                                                                             tGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCg            >  2:9659934/1‑93 (MQ=255)

                                                                             tGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCg            <  1:9233073/93‑1 (MQ=255)

                                                                               aatggcaatggcGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGAt          <  1:9736530/93‑1 (MQ=255)

                                                                               aatggcaatggcGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGAt          <  1:6236147/93‑1 (MQ=255)

                                                                                 tGGCAAGGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGc        <  1:2117884/93‑1 (MQ=255)

                                                                                 tGGCAAGGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGc        <  2:735766/93‑1 (MQ=255)

                                                                                   gCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCa      <  1:1986673/93‑1 (MQ=255)

                                                                                   gCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCa      >  1:7625409/1‑93 (MQ=255)

                                                                                    cAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCAt     <  2:2667319/93‑1 (MQ=255)

                                                                                     aaTGGCGCGGAAATGAGCGCGGAAGGCGCAGGGATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATg    >  1:1698558/1‑93 (MQ=255)

                                                                                      aTGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGa   <  2:6649881/93‑1 (MQ=255)

                                                                                      aTGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGa   >  1:9143865/1‑93 (MQ=255)

                                                                                      aTGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGa   <  1:4032375/93‑1 (MQ=255)

TTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC  >  NC_000913/2774143‑2774322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAG  >  NC_000913/2774142‑2774326

TTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGC                                                                                             >  SRR4302540.1116801/1‑94 (MQ=60)

 TTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCG                                                                                            >  SRR4302540.6459893/1‑94 (MQ=60)

   ACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGGGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGA                                                                                          >  SRR4302540.3553263/1‑94 (MQ=60)

      CGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAAT                                                                                       >  SRR4302540.143745/1‑94 (MQ=60)

      CGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAAT                                                                                       >  SRR4302540.3144379/1‑94 (MQ=60)

        CTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGA                                                                                     <  SRR4302540.9637706/94‑1 (MQ=60)

             CAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCCTTTGCTCAACGGCATGAATTGCAATGGCGCGGAAATGAGCGCG                                                                                >  SRR4302540.4817500/1‑94 (MQ=60)

             CAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGCATGGCAATGGCGCGGAAATGAGCGCG                                                                                >  SRR4302540.7820561/1‑94 (MQ=60)

              AATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGG                                                                               >  SRR4302540.3345616/1‑94 (MQ=60)

              AATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGG                                                                               >  SRR4302540.233822/1‑94 (MQ=60)

                 GGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAG                                                                            >  SRR4302540.5401102/1‑94 (MQ=60)

                  GCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGC                                                                           >  SRR4302540.6972416/1‑94 (MQ=60)

                  GCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGC                                                                           >  SRR4302540.7825163/1‑94 (MQ=60)

                  GCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGC                                                                           <  SRR4302540.406710/94‑1 (MQ=60)

                    GGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCG                                                                         >  SRR4302540.7256135/1‑94 (MQ=60)

                    GGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCG                                                                         >  SRR4302540.1714062/1‑94 (MQ=60)

                    GGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCG                                                                         >  SRR4302540.7181927/1‑94 (MQ=60)

                     GAGCGTTTATGGCTCCTGATGCTGACGGTGACGATGAATGGCATGTGCTCAACGGCATGCATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGC                                                                        >  SRR4302540.5480952/1‑94 (MQ=60)

                     GAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGC                                                                        >  SRR4302540.5480951/1‑94 (MQ=60)

                      AGCGTTTACGGCCCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCA                                                                       <  SRR4302540.2578593/94‑1 (MQ=60)

                       GCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAG                                                                      <  SRR4302540.9651124/94‑1 (MQ=60)

                        CGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGG                                                                     <  SRR4302540.6898439/94‑1 (MQ=60)

                        CGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCACAGG                                                                     >  SRR4302540.5654594/1‑94 (MQ=60)

                         GTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGT                                                                    <  SRR4302540.7331870/94‑1 (MQ=60)

                         GTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGT                                                                    <  SRR4302540.3667435/94‑1 (MQ=60)

                         GTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGT                                                                    <  SRR4302540.8688762/94‑1 (MQ=60)

                         GTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGT                                                                    >  SRR4302540.6097242/1‑94 (MQ=60)

                          TTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTA                                                                   >  SRR4302540.5193276/1‑94 (MQ=60)

                          TTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTA                                                                   >  SRR4302540.1522546/1‑94 (MQ=60)

                          TTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGGA                                                                   >  SRR4302540.9339865/1‑94 (MQ=60)

                           TTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTAT                                                                  <  SRR4302540.3363895/94‑1 (MQ=60)

                             ATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCG                                                                <  SRR4302540.5807745/94‑1 (MQ=60)

                             ATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCG                                                                >  SRR4302540.535715/1‑94 (MQ=60)

                               GGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCT                                                              <  SRR4302540.2547003/94‑1 (MQ=60)

                               GGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCT                                                              <  SRR4302540.2547004/94‑1 (MQ=60)

                               GGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGAGCGGAAATGAGCGCGGAAGCCGCAGCTATCGCT                                                              >  SRR4302540.663013/1‑94 (MQ=60)

                                GCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTG                                                             >  SRR4302540.9444290/1‑94 (MQ=60)

                                GCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTG                                                             <  SRR4302540.7973486/94‑1 (MQ=60)

                                GCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTG                                                             >  SRR4302540.4965521/1‑94 (MQ=60)

                                 CTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGT                                                            >  SRR4302540.4650411/1‑94 (MQ=60)

                                 CTCCTGAGGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGT                                                            <  SRR4302540.982502/94‑1 (MQ=60)

                                  TCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTC                                                           >  SRR4302540.8905687/1‑94 (MQ=60)

                                  TCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTC                                                           <  SRR4302540.10032786/94‑1 (MQ=60)

                                   ctccttcctgacggtcactatcAATGGCATTTGCTCACCGGCCTCGACGGCAATGGCGCGGAAATGAGCCCGGAAGCCGCAGGTATCGCTGTCT                                                          <  SRR4302540.3862505/72‑1 (MQ=35)

                                   CCTGATGCTGACGGTGACGATAAATGGCATTTGCTCACCGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCT                                                          <  SRR4302540.5664438/94‑1 (MQ=60)

                                   CCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCT                                                          <  SRR4302540.5599604/94‑1 (MQ=60)

                                   CCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCT                                                          <  SRR4302540.1209138/94‑1 (MQ=60)

                                   CCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCT                                                          >  SRR4302540.7473366/1‑94 (MQ=60)

                                   CCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCT                                                          >  SRR4302540.2057126/1‑94 (MQ=60)

                                     TGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGC                                                        >  SRR4302540.7593250/1‑94 (MQ=60)

                                     TGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGC                                                        <  SRR4302540.7662622/94‑1 (MQ=60)

                                     TGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGACAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGC                                                        >  SRR4302540.976903/1‑94 (MQ=60)

                                         GCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGA                                                    >  SRR4302540.2199635/1‑94 (MQ=60)

                                         GCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGA                                                    >  SRR4302540.4313697/1‑94 (MQ=60)

                                          CTGACGGTGACGATAAATGGCATTTGCTGAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGGTGTCTGCCTGAT                                                   >  SRR4302540.6409444/1‑94 (MQ=60)

                                          CTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGAT                                                   >  SRR4302540.6409443/1‑94 (MQ=60)

                                          CTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGAT                                                   <  SRR4302540.7478438/94‑1 (MQ=60)

                                          CTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGAT                                                   <  SRR4302540.1224192/94‑1 (MQ=60)

                                           TGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATT                                                  <  SRR4302540.3231065/94‑1 (MQ=60)

                                               GGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAAT                                              >  SRR4302540.9268834/1‑94 (MQ=60)

                                               GGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAAT                                              <  SRR4302540.6571543/94‑1 (MQ=60)

                                                GTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATA                                             >  SRR4302540.15396/1‑94 (MQ=60)

                                                GTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATA                                             <  SRR4302540.5373504/94‑1 (MQ=60)

                                                 TGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATAT                                            <  SRR4302540.4250779/94‑1 (MQ=60)

                                                 TGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATAT                                            >  SRR4302540.3158062/1‑94 (MQ=60)

                                                  GACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATA                                           >  SRR4302540.7418387/1‑94 (MQ=60)

                                                  GACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATA                                           <  SRR4302540.6954045/94‑1 (MQ=60)

                                                   ACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAG                                          <  SRR4302540.3699203/94‑1 (MQ=60)

                                                    CGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGC                                         >  SRR4302540.7298478/1‑94 (MQ=60)

                                                      ATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGGGCGGAAATGAGCGCGGAATCAGCAGGTGTTGTTGTCTGCCTGATggaatttaccct                                       >  SRR4302540.3185653/1‑82 (MQ=60)

                                                      ATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCA                                       >  SRR4302540.10116522/1‑94 (MQ=60)

                                                      ATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCA                                       >  SRR4302540.3167567/1‑94 (MQ=60)

                                                      ATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCAA                                       >  SRR4302540.3185651/1‑94 (MQ=60)

                                                      ATAAATGGCATTTGCTAAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCA                                       <  SRR4302540.9184585/94‑1 (MQ=60)

                                                       TAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCAT                                      <  SRR4302540.739189/94‑1 (MQ=60)

                                                       TAAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCAT                                      <  SRR4302540.3475717/94‑1 (MQ=60)

                                                        AAATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATC                                     >  SRR4302540.4284008/1‑94 (MQ=60)

                                                         AATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCA                                    >  SRR4302540.4146727/1‑94 (MQ=60)

                                                         AATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCA                                    <  SRR4302540.7717098/94‑1 (MQ=60)

                                                         AATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCA                                    <  SRR4302540.7717099/94‑1 (MQ=60)

                                                          ATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATaaa                                   >  SRR4302540.8176797/1‑91 (MQ=60)

                                                          ATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCAC                                   <  SRR4302540.9771143/94‑1 (MQ=60)

                                                          ATGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCAC                                   >  SRR4302540.7505705/1‑94 (MQ=60)

                                                          ATGGCAGTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCAC                                   <  SRR4302540.8429770/94‑1 (MQ=60)

                                                           TGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACG                                  <  SRR4302540.5621318/94‑1 (MQ=60)

                                                           TGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACG                                  >  SRR4302540.380427/1‑94 (MQ=60)

                                                           TGGCATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACG                                  <  SRR4302540.8358154/94‑1 (MQ=60)

                                                              CATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGACT                               >  SRR4302540.9534836/1‑94 (MQ=60)

                                                               ATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTG                              >  SRR4302540.1151576/1‑94 (MQ=60)

                                                               ATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTG                              >  SRR4302540.1783218/1‑94 (MQ=60)

                                                               ATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTG                              >  SRR4302540.3686385/1‑94 (MQ=60)

                                                               ATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTG                              <  SRR4302540.8551489/94‑1 (MQ=60)

                                                               ATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTG                              >  SRR4302540.8453601/1‑94 (MQ=60)

                                                               ATTTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTG                              >  SRR4302540.8453600/1‑94 (MQ=60)

                                                                 TTGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCC                            >  SRR4302540.9762335/1‑94 (MQ=60)

                                                                  TGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCT                           <  SRR4302540.188296/94‑1 (MQ=60)

                                                                  TGCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCT                           >  SRR4302540.1723310/1‑94 (MQ=60)

                                                                   GCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTC                          >  SRR4302540.2247449/1‑94 (MQ=60)

                                                                   GCTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTC                          <  SRR4302540.779204/94‑1 (MQ=60)

                                                                    CTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCA                         >  SRR4302540.9483418/1‑94 (MQ=60)

                                                                    CTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCA                         >  SRR4302540.9448329/1‑94 (MQ=60)

                                                                    CTCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCAAGCCTGCCTCA                         >  SRR4302540.5882898/1‑94 (MQ=60)

                                                                     TCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCAC                        >  SRR4302540.634920/1‑94 (MQ=60)

                                                                     TCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCAC                        <  SRR4302540.8107048/94‑1 (MQ=60)

                                                                     CCAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCAC                        <  SRR4302540.2222755/94‑1 (MQ=60)

                                                                      CAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACC                       <  SRR4302540.8477336/94‑1 (MQ=60)

                                                                      CAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACC                       <  SRR4302540.439393/94‑1 (MQ=60)

                                                                      CAACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACC                       <  SRR4302540.8477335/94‑1 (MQ=60)

                                                                       AACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCG                      <  SRR4302540.9390814/94‑1 (MQ=60)

                                                                        ACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGA                     >  SRR4302540.7193151/1‑94 (MQ=60)

                                                                        ACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGA                     >  SRR4302540.6456708/1‑94 (MQ=60)

                                                                        ACGGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGA                     <  SRR4302540.2428850/94‑1 (MQ=60)

                                                                          GGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAAT                   >  SRR4302540.671272/1‑94 (MQ=60)

                                                                          GGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAAT                   <  SRR4302540.7914836/94‑1 (MQ=60)

                                                                          GGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAAT                   <  SRR4302540.8084527/94‑1 (MQ=60)

                                                                          GGCATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGGATCGCTGTCTGCCTGGTTGAATATAGCCATCACGCCTGCCTCACCGAAT                   >  SRR4302540.9207074/1‑94 (MQ=60)

                                                                          GGCATGAATGGCAAGGGCGCGGAAATGGGCGGGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAAT                   <  SRR4302540.975253/94‑1 (MQ=60)

                                                                            tatgaattggAATGGGGCGGAAATGAGCCGGTAAGCCGCAGTTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGC                 <  SRR4302540.8274170/84‑1 (MQ=60)

                                                                            CATGAGTGGCAGTGGCGCGGAGATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGC                 <  SRR4302540.9064378/94‑1 (MQ=60)

                                                                            CATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGC                 >  SRR4302540.1749236/1‑94 (MQ=60)

                                                                            CATGAAGGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGC                 <  SRR4302540.3056118/94‑1 (MQ=60)

                                                                             ATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCG                >  SRR4302540.6881744/1‑94 (MQ=60)

                                                                             ATGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCG                >  SRR4302540.3010694/1‑94 (MQ=60)

                                                                              TGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGA               <  SRR4302540.9343725/94‑1 (MQ=60)

                                                                              TGAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGA               >  SRR4302540.4931166/1‑94 (MQ=60)

                                                                               GAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGAT              <  SRR4302540.1726014/94‑1 (MQ=60)

                                                                               GAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGAT              >  SRR4302540.212109/1‑94 (MQ=60)

                                                                               GAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGAT              >  SRR4302540.1024003/1‑94 (MQ=60)

                                                                               GAATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTCCCTCACCGAATGCGAT              >  SRR4302540.2388413/1‑94 (MQ=60)

                                                                                AATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATG             >  SRR4302540.1231045/1‑94 (MQ=60)

                                                                                AATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATG             <  SRR4302540.6305509/94‑1 (MQ=60)

                                                                                AATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATG             <  SRR4302540.9850842/94‑1 (MQ=60)

                                                                                 ATGGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGC            >  SRR4302540.9521633/1‑94 (MQ=60)

                                                                                  TGGCAAGGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCC           <  SRR4302540.2140617/94‑1 (MQ=60)

                                                                                   GGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCA          >  SRR4302540.7711163/1‑94 (MQ=60)

                                                                                   GGCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCA          >  SRR4302540.2270365/1‑94 (MQ=60)

                                                                                    GCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCAT         <  SRR4302540.2221186/94‑1 (MQ=60)

                                                                                    GCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCAT         <  SRR4302540.2008210/94‑1 (MQ=60)

                                                                                    GCAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCAT         <  SRR4302540.8112870/94‑1 (MQ=60)

                                                                                     CAATGGCGCGGAAATGAGCGCGGAAGGCGCAGGGATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATG        >  SRR4302540.1716957/1‑94 (MQ=60)

                                                                                     CAATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATG        >  SRR4302540.2836033/1‑94 (MQ=60)

                                                                                      AATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGA       >  SRR4302540.9253706/1‑94 (MQ=60)

                                                                                      AATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATCGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGA       >  SRR4302540.8890993/1‑94 (MQ=60)

                                                                                       ATGGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC      <  SRR4302540.4075856/94‑1 (MQ=60)

                                                                                       ATGGCGCGAAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC      <  SRR4302540.6580918/94‑1 (MQ=60)

                                                                                         GGCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGG    >  SRR4302540.2245860/1‑94 (MQ=60)

                                                                                          GCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGA   <  SRR4302540.8857369/94‑1 (MQ=60)

                                                                                          GCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGA   <  SRR4302540.8857368/94‑1 (MQ=60)

                                                                                          GCGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGA   >  SRR4302540.8726607/1‑94 (MQ=60)

                                                                                           CGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGCATGCGATGCCATGACGGAG  >  SRR4302540.3702902/1‑94 (MQ=60)

                                                                                           CGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAG  >  SRR4302540.8200217/1‑94 (MQ=60)

TTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGACGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATGAGCGCGGAAGCCGCAGGTATCGCTGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGACGGAG  >  NC_000913/2774142‑2774326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`