Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,812,859 Δ1 bp intergenic (‑105/+46) ygaG ← / ← gshA hypothetical protein/gamma‑glutamate‑cysteine ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,812,8580C.99.7% 1456.0 / ‑3.8 320intergenic (‑104/+47)ygaG/gshAhypothetical protein/gamma‑glutamate‑cysteine ligase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base . (176/143);  minor base A (0/1);  total (176/144)
Fisher's exact test for biased strand distribution p-value = 4.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 342 total aligned reads displayed.

CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC  >  NC_000913/2812766‑2812946
                                                                                            |                                                                                        
 ggTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTca                                                                                         >  1:4162629/1‑92 (MQ=255)
     aTTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAgaga                                                                                    >  1:7529221/1‑93 (MQ=255)
     aTTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAgaga                                                                                    <  2:8485024/93‑1 (MQ=255)
      tttttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAt                                                                                   >  1:8458103/1‑93 (MQ=255)
      tttttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAt                                                                                   >  1:3186462/1‑93 (MQ=255)
       ttttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATg                                                                                  >  2:4654210/1‑93 (MQ=255)
        tttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa                                                                                 <  1:6137214/93‑1 (MQ=255)
        tttttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa                                                                                 >  1:333415/1‑93 (MQ=255)
          tttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGaaa                                                                               <  2:4882594/93‑1 (MQ=255)
           ttAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAt                                                                              >  1:62251/1‑93 (MQ=255)
             aaaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAttt                                                                            >  1:10045020/1‑93 (MQ=255)
             aaaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAttt                                                                            <  2:682772/93‑1 (MQ=255)
              aaaaTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtttt                                                                           <  2:514997/93‑1 (MQ=255)
                    ttCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAc                                                                     <  1:6666225/93‑1 (MQ=255)
                     tCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACt                                                                    >  1:7315642/1‑93 (MQ=255)
                       tGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCa                                                                  <  1:4599732/93‑1 (MQ=255)
                       tGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCa                                                                  <  1:8530910/93‑1 (MQ=255)
                        gAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAc                                                                 >  2:948940/1‑93 (MQ=255)
                        gAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAc                                                                 >  1:1722324/1‑93 (MQ=255)
                         aaCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCACTGAATT‑CAGAGATGAAATTTTGGCCACTCACg                                                                >  2:528041/1‑93 (MQ=255)
                          aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa                                                               >  2:6338381/1‑93 (MQ=255)
                          aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa                                                               <  2:3129966/93‑1 (MQ=255)
                           ctctTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAg                                                              <  2:6513661/93‑1 (MQ=255)
                            tctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGt                                                             >  2:3902499/1‑93 (MQ=255)
                             ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTg                                                            <  1:5148968/93‑1 (MQ=255)
                             ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTg                                                            >  2:9773220/1‑93 (MQ=255)
                             ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTg                                                            >  1:1936312/1‑93 (MQ=255)
                              tttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTgg                                                           >  2:8117490/1‑93 (MQ=255)
                               ttcttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGc                                                          >  2:2597782/1‑93 (MQ=255)
                               ttcttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGc                                                          <  1:9577229/93‑1 (MQ=255)
                                  ttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCtt                                                       >  2:9933878/1‑93 (MQ=255)
                                     ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt                                                    >  2:4227069/1‑93 (MQ=255)
                                     ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt                                                    <  2:8182626/93‑1 (MQ=255)
                                     ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt                                                    >  1:1104493/1‑93 (MQ=255)
                                      cAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttc                                                   >  1:5411029/1‑93 (MQ=255)
                                      cAGGCGAGTCTGAGTATAGGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttc                                                   <  2:5497623/93‑1 (MQ=255)
                                       aGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttct                                                  >  1:3666346/1‑93 (MQ=255)
                                        ggCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttctt                                                 >  1:185381/1‑93 (MQ=255)
                                         gCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttt                                                <  1:9647548/93‑1 (MQ=255)
                                         gCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAATCACGAGTGGCCTttttcttt                                                <  1:1832115/93‑1 (MQ=255)
                                          ggAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttctttt                                               <  1:2963251/92‑1 (MQ=255)
                                           gAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttttc                                              <  2:10010519/93‑1 (MQ=255)
                                           gAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCAACCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttttc                                              <  1:3818924/93‑1 (MQ=255)
                                            aGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCCGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTtttcttttct                                             >  1:5083327/1‑93 (MQ=255)
                                              tCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTTTTTTCTGt                                           >  2:1856058/1‑93 (MQ=255)
                                               cTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTc                                          >  2:1785217/1‑93 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         <  2:2117909/93‑1 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         >  1:2111384/1‑93 (MQ=255)
                                                tGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa                                         <  1:5199459/93‑1 (MQ=255)
                                                 gAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAg                                        <  1:7669450/93‑1 (MQ=255)
                                                 gAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAg                                        >  1:700651/1‑93 (MQ=255)
                                                  aGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAgg                                       >  1:6831173/1‑93 (MQ=255)
                                                   gTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGc                                      >  2:6111344/1‑93 (MQ=255)
                                                   gTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGc                                      >  2:5177650/1‑93 (MQ=255)
                                                   gTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGc                                      <  1:4268954/93‑1 (MQ=255)
                                                    tataTGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCg                                     >  2:1298274/1‑93 (MQ=255)
                                                    tataTGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCg                                     <  1:836469/93‑1 (MQ=255)
                                                     atatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCgt                                    >  2:2933411/1‑93 (MQ=255)
                                                       atGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCgtgt                                  >  1:5688961/1‑93 (MQ=255)
                                                        tGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCGTTTTTCTTTTCTGTCAGGCgtgat                                 >  2:9013166/1‑91 (MQ=255)
                                                          aaaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtttt                               <  1:1636230/93‑1 (MQ=255)
                                                           aaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTGAGGCGTGttttt                              <  1:5291868/93‑1 (MQ=255)
                                                           aaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttttt                              <  2:8619403/93‑1 (MQ=255)
                                                           aaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttttt                              >  2:3276644/1‑93 (MQ=255)
                                                             gACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTcc                            <  1:9757559/93‑1 (MQ=255)
                                                             gACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTcc                            <  2:7257970/93‑1 (MQ=255)
                                                             gACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTcc                            <  1:6509772/93‑1 (MQ=255)
                                                              aCGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCa                           <  2:9398628/93‑1 (MQ=255)
                                                               cgcgCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAg                          <  2:3455028/93‑1 (MQ=255)
                                                                gcgcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCTGGCGTGTTTTTTCAGc                         >  1:8185236/1‑93 (MQ=255)
                                                                gcgcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGc                         <  2:2439069/93‑1 (MQ=255)
                                                                 cgcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGcc                        >  1:7792814/1‑93 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGACTT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       <  2:6933115/93‑1 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       >  2:3924172/1‑93 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       <  2:8722673/93‑1 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       <  2:7449802/93‑1 (MQ=255)
                                                                  gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCca                       <  2:601260/93‑1 (MQ=255)
                                                                   cATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCcac                      >  1:50941/1‑93 (MQ=255)
                                                                    aTTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCcaca                     <  1:2563915/93‑1 (MQ=255)
                                                                     tttGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCacac                    <  1:8010979/93‑1 (MQ=255)
                                                                        gTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGc                 <  1:6064844/93‑1 (MQ=255)
                                                                        gTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGc                 >  2:6604764/1‑93 (MQ=255)
                                                                        gTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGc                 <  1:8749565/93‑1 (MQ=255)
                                                                         ttATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCa                >  1:2774514/1‑93 (MQ=255)
                                                                          tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCaa               >  2:5712601/1‑93 (MQ=255)
                                                                          tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCaa               >  1:4472714/1‑93 (MQ=255)
                                                                           atcatcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCaaa              <  2:8867475/93‑1 (MQ=255)
                                                                            tcatcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAAc             <  1:6368102/93‑1 (MQ=255)
                                                                            tcatcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAAc             <  1:4996661/93‑1 (MQ=255)
                                                                              atcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACgg           >  2:2822115/1‑93 (MQ=255)
                                                                               tcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGt          <  1:9016181/93‑1 (MQ=255)
                                                                                catcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGtt         <  2:2743276/93‑1 (MQ=255)
                                                                                 atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGttg        >  1:922893/1‑92 (MQ=255)
                                                                                 atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTc        <  2:755540/93‑1 (MQ=255)
                                                                                 atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTc        >  2:4415790/1‑93 (MQ=255)
                                                                                  tcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCg       >  1:1207077/1‑93 (MQ=255)
                                                                                   cccTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCgg      >  1:2389414/1‑93 (MQ=255)
                                                                                     cTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTa    <  1:4677455/93‑1 (MQ=255)
                                                                                      tGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAt   >  1:5935310/1‑93 (MQ=255)
                                                                                      tGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAt   <  2:1337733/93‑1 (MQ=255)
                                                                                            |                                                                                        
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATC  >  NC_000913/2812766‑2812946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  >  NC_000913/2812766‑2812952
                                                                                             |                                                                                             
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCA                                                                                               >  SRR4302540.4207750/1‑94 (MQ=60)
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCA                                                                                               >  SRR4302540.9289554/1‑94 (MQ=60)
  GTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGA                                                                                            <  SRR4302540.8282856/94‑1 (MQ=60)
   TAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAG                                                                                           <  SRR4302540.9238844/94‑1 (MQ=60)
   TAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAG                                                                                           <  SRR4302540.3147021/94‑1 (MQ=60)
    AATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGA                                                                                          >  SRR4302540.7613496/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302540.9239675/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         <  SRR4302540.8803953/94‑1 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         <  SRR4302540.8803954/94‑1 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302540.8556310/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302540.2863402/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302540.3221082/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         >  SRR4302540.368761/1‑94 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         <  SRR4302540.4880529/94‑1 (MQ=60)
     ATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAT                                                                                         <  SRR4302540.4527542/94‑1 (MQ=60)
      TTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATG                                                                                        >  SRR4302540.6136761/1‑94 (MQ=60)
      TTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATG                                                                                        >  SRR4302540.9858494/1‑94 (MQ=60)
       TTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGA                                                                                       >  SRR4302540.7369968/1‑94 (MQ=60)
       TTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGA                                                                                       >  SRR4302540.336768/1‑94 (MQ=60)
       TTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGA                                                                                       >  SRR4302540.5076607/1‑94 (MQ=60)
        TTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAA                                                                                      >  SRR4302540.6830615/1‑94 (MQ=60)
        TTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAA                                                                                      >  SRR4302540.1282861/1‑94 (MQ=60)
        TTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAA                                                                                      <  SRR4302540.6205568/94‑1 (MQ=60)
          TTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAT                                                                                    >  SRR4302540.6691887/1‑94 (MQ=60)
          TTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAT                                                                                    >  SRR4302540.62880/1‑94 (MQ=60)
           TTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATT                                                                                   <  SRR4302540.7143831/94‑1 (MQ=60)
            TAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTT                                                                                  >  SRR4302540.10161795/1‑94 (MQ=60)
             AAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 >  SRR4302540.5141771/1‑94 (MQ=60)
             AAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 >  SRR4302540.5141768/1‑94 (MQ=60)
             AAAAATTTTCTGAACTCTGTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTT                                                                                 <  SRR4302540.200991/94‑1 (MQ=60)
               AAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGG                                                                               >  SRR4302540.6689210/1‑94 (MQ=60)
                   TTTCTGAACTCTTTCTTCCCAGGCGAGTCTTAGTATATGACAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGTCCAC                                                                           >  SRR4302540.1729552/1‑94 (MQ=60)
                   TTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAC                                                                           >  SRR4302540.1785331/1‑94 (MQ=60)
                   TTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAC                                                                           >  SRR4302540.1785329/1‑94 (MQ=60)
                   TTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAC                                                                           <  SRR4302540.8899447/94‑1 (MQ=60)
                    TTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACT                                                                          >  SRR4302540.9930448/1‑94 (MQ=60)
                    TTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACT                                                                          <  SRR4302540.6739902/94‑1 (MQ=60)
                    TTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACT                                                                          >  SRR4302540.1711543/1‑94 (MQ=60)
                    TTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACT                                                                          >  SRR4302540.7397336/1‑94 (MQ=60)
                    TTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACT                                                                          >  SRR4302540.2492595/1‑94 (MQ=60)
                      CTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCA                                                                        <  SRR4302540.1368505/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302540.8630033/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       >  SRR4302540.2265091/1‑94 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302540.4649172/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302540.6112776/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302540.6497892/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302540.7565409/94‑1 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       >  SRR4302540.1740909/1‑94 (MQ=60)
                       TGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAC                                                                       <  SRR4302540.5617118/94‑1 (MQ=60)
                        gaacgcggtcttgccaggcgaggctgaatataggcaagccgctCATTTTTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACG                                                                      <  SRR4302540.3350326/51‑1 (MQ=57)
                        GAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACG                                                                      <  SRR4302540.3350327/94‑1 (MQ=60)
                         AACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGA                                                                     >  SRR4302540.5760672/1‑94 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    >  SRR4302540.1911251/1‑94 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    <  SRR4302540.209401/94‑1 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    >  SRR4302540.8512001/1‑94 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    <  SRR4302540.7025330/94‑1 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    >  SRR4302540.113089/1‑94 (MQ=60)
                          ACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAG                                                                    <  SRR4302540.6428800/94‑1 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   >  SRR4302540.3349716/1‑94 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   >  SRR4302540.2428476/1‑94 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   >  SRR4302540.96933/1‑94 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGT                                                                   >  SRR4302540.8523163/1‑94 (MQ=60)
                           CTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGG                                                                   >  SRR4302540.6255120/1‑94 (MQ=60)
                            TCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTG                                                                  >  SRR4302540.1957407/1‑94 (MQ=60)
                             CTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGG                                                                 <  SRR4302540.5204793/94‑1 (MQ=60)
                             CTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACACACGAGTGG                                                                 >  SRR4302540.4427209/1‑94 (MQ=60)
                              TTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGC                                                                <  SRR4302540.560474/94‑1 (MQ=60)
                              TTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGC                                                                >  SRR4302540.4326838/1‑94 (MQ=60)
                              TTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGC                                                                <  SRR4302540.8203860/94‑1 (MQ=60)
                               TTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCC                                                               <  SRR4302540.9690334/94‑1 (MQ=60)
                               TTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCC                                                               >  SRR4302540.6280833/1‑94 (MQ=60)
                               TTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCC                                                               >  SRR4302540.1091592/1‑94 (MQ=60)
                                TCTCCCCAGGCGAGTCTGAGTATATGAAAGCCGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCT                                                              <  SRR4302540.1916535/94‑1 (MQ=60)
                                 CTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTT                                                             >  SRR4302540.8196869/1‑94 (MQ=60)
                                  TTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTT                                                            >  SRR4302540.8627412/1‑94 (MQ=60)
                                   TCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTT                                                           >  SRR4302540.6923365/1‑94 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          <  SRR4302540.8351851/94‑1 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          >  SRR4302540.1115881/1‑94 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          <  SRR4302540.891380/94‑1 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          <  SRR4302540.631906/94‑1 (MQ=60)
                                    CCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTT                                                          >  SRR4302540.3673284/1‑94 (MQ=60)
                                     CCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTC                                                         <  SRR4302540.4716275/94‑1 (MQ=60)
                                     CCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTC                                                         >  SRR4302540.5470522/1‑94 (MQ=60)
                                      CAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCT                                                        >  SRR4302540.3706462/1‑94 (MQ=60)
                                       TGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTT                                                       >  SRR4302540.8810984/1‑94 (MQ=60)
                                       AGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTT                                                       >  SRR4302540.187223/1‑94 (MQ=60)
                                         GCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTT                                                     <  SRR4302540.5283536/94‑1 (MQ=60)
                                         GCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTT                                                     <  SRR4302540.9761160/94‑1 (MQ=60)
                                         GCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTT                                                     <  SRR4302540.8584973/94‑1 (MQ=60)
                                         GCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAATCACGAGTGGCCTTTTTCTTTT                                                     <  SRR4302540.1852160/94‑1 (MQ=60)
                                         GCGAGTCTGAGTATAGGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAGGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTT                                                     <  SRR4302540.9761328/94‑1 (MQ=60)
                                          cgagtgcttGTATATTAAAGACGCCCCTTTTTTATCCTCATCCCTTAATT‑CATAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    <  SRR4302540.2589247/85‑1 (MQ=43)
                                          GGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    <  SRR4302540.2995936/94‑1 (MQ=60)
                                          CGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    <  SRR4302540.2589248/94‑1 (MQ=60)
                                          CGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    >  SRR4302540.1773516/1‑94 (MQ=60)
                                          CGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    <  SRR4302540.6746690/94‑1 (MQ=60)
                                          CGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTC                                                    >  SRR4302540.7985081/1‑94 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   <  SRR4302540.6720401/94‑1 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   <  SRR4302540.6043310/94‑1 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   >  SRR4302540.4183634/1‑94 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCCGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   >  SRR4302540.5138287/1‑94 (MQ=60)
                                           GAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCAACCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   <  SRR4302540.3860496/94‑1 (MQ=60)
                                           GAGTCTGAGTATATGAAACACGCGCATTTGTTATCATCAGCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCT                                                   <  SRR4302540.6043309/94‑1 (MQ=60)
                                             GTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGT                                                 <  SRR4302540.5778791/94‑1 (MQ=60)
                                              TCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTC                                                >  SRR4302540.5146110/1‑94 (MQ=60)
                                               TTGAGTATATGACAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302540.7636679/94‑1 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302540.7636680/94‑1 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302540.5192721/94‑1 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               >  SRR4302540.2134042/1‑94 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               >  SRR4302540.7510309/1‑94 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302540.7190544/94‑1 (MQ=60)
                                               CTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCA                                               <  SRR4302540.452646/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              >  SRR4302540.6318348/1‑94 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              <  SRR4302540.3839059/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              >  SRR4302540.708172/1‑94 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              <  SRR4302540.5256082/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              <  SRR4302540.5177607/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              <  SRR4302540.5256083/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              <  SRR4302540.2382896/94‑1 (MQ=60)
                                                TGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAG                                              >  SRR4302540.9375177/1‑94 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             >  SRR4302540.6906813/1‑94 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             <  SRR4302540.7755904/94‑1 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             <  SRR4302540.5352680/94‑1 (MQ=60)
                                                 GAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGG                                             <  SRR4302540.7755906/94‑1 (MQ=60)
                                                  AGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGC                                            <  SRR4302540.4855751/94‑1 (MQ=60)
                                                   GTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCG                                           <  SRR4302540.4315386/94‑1 (MQ=60)
                                                   GTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCG                                           >  SRR4302540.3132704/1‑94 (MQ=60)
                                                   GTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCG                                           >  SRR4302540.7945252/1‑94 (MQ=60)
                                                   GTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCG                                           >  SRR4302540.2095754/1‑94 (MQ=60)
                                                    TATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGT                                          <  SRR4302540.845354/94‑1 (MQ=60)
                                                    TATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGT                                          <  SRR4302540.845355/94‑1 (MQ=60)
                                                     ATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTG                                         >  SRR4302540.1143376/1‑94 (MQ=60)
                                                     ATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTG                                         <  SRR4302540.2798213/94‑1 (MQ=60)
                                                      TATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGT                                        <  SRR4302540.9697455/94‑1 (MQ=60)
                                                      TATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGT                                        >  SRR4302540.5751583/1‑94 (MQ=60)
                                                        TGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTT                                      <  SRR4302540.3545243/94‑1 (MQ=60)
                                                        TGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTT                                      >  SRR4302540.2973053/1‑94 (MQ=60)
                                                        TGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTT                                      >  SRR4302540.3999759/1‑94 (MQ=60)
                                                        TGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTT                                      <  SRR4302540.6135477/94‑1 (MQ=60)
                                                         GAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTT                                     <  SRR4302540.7782236/94‑1 (MQ=60)
                                                          AAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTT                                    >  SRR4302540.9825110/1‑94 (MQ=60)
                                                          AAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTT                                    <  SRR4302540.1654125/94‑1 (MQ=60)
                                                           AAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTGAGGCGTGTTTTTC                                   <  SRR4302540.5349725/94‑1 (MQ=60)
                                                             GACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCA                                 <  SRR4302540.9872026/94‑1 (MQ=60)
                                                             GACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCA                                 <  SRR4302540.5502669/94‑1 (MQ=60)
                                                             GACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCA                                 <  SRR4302540.6582104/94‑1 (MQ=60)
                                                             GACGCGCATTTGCTATCATCGTCCCTGAATT‑CAGAGATGAAATTTTGGCCTCTCACGAGTGCCCTTTTTCTTTTATGGCAGGCGTGTTTTTCCA                                 <  SRR4302540.6582105/94‑1 (MQ=60)
                                                              ACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAG                                <  SRR4302540.262596/94‑1 (MQ=60)
                                                               CGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCTGGCGTGTTTTTTCAGC                               >  SRR4302540.8280324/1‑94 (MQ=60)
                                                                GCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCC                              >  SRR4302540.7883906/1‑94 (MQ=60)
                                                                GCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCC                              <  SRR4302540.4910411/94‑1 (MQ=60)
                                                                  GCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCAC                            >  SRR4302540.51451/1‑94 (MQ=60)
                                                                   CATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACA                           <  SRR4302540.7677694/94‑1 (MQ=60)
                                                                   CATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACA                           >  SRR4302540.1868902/1‑94 (MQ=60)
                                                                   CATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACA                           >  SRR4302540.1869145/1‑94 (MQ=60)
                                                                    ATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAC                          >  SRR4302540.9525314/1‑94 (MQ=60)
                                                                    ATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAC                          <  SRR4302540.2591559/94‑1 (MQ=60)
                                                                     TTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACC                         <  SRR4302540.8104170/94‑1 (MQ=60)
                                                                       TGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGC                       >  SRR4302540.6447399/1‑94 (MQ=60)
                                                                        GTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCA                      >  SRR4302540.2804497/1‑94 (MQ=60)
                                                                        GTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCA                      <  SRR4302540.6132269/94‑1 (MQ=60)
                                                                        GTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCA                      <  SRR4302540.8851094/94‑1 (MQ=60)
                                                                        GTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGAGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCAGACCGCA                      >  SRR4302540.2804498/1‑94 (MQ=60)
                                                                         TTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAA                     >  SRR4302540.4521224/1‑94 (MQ=60)
                                                                          TATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAA                    >  SRR4302540.5287658/1‑94 (MQ=60)
                                                                           ATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAAC                   <  SRR4302540.154752/94‑1 (MQ=60)
                                                                            TCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACG                  <  SRR4302540.5050753/94‑1 (MQ=60)
                                                                            TCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACG                  <  SRR4302540.6439005/94‑1 (MQ=60)
                                                                            TCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACG                  >  SRR4302540.7986846/1‑94 (MQ=60)
                                                                            TCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACG                  >  SRR4302540.4656996/1‑94 (MQ=60)
                                                                              ATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGT                >  SRR4302540.1106936/1‑94 (MQ=60)
                                                                              ATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGT                >  SRR4302540.5114347/1‑94 (MQ=60)
                                                                              ATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGT                >  SRR4302540.4048434/1‑94 (MQ=60)
                                                                               TCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTT               <  SRR4302540.9124368/94‑1 (MQ=60)
                                                                                TATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              <  SRR4302540.9919642/94‑1 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTG              >  SRR4302540.932624/1‑94 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              <  SRR4302540.5206269/94‑1 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              <  SRR4302540.5250798/94‑1 (MQ=60)
                                                                                CATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTC              <  SRR4302540.5443876/94‑1 (MQ=60)
                                                                                 ATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCG             >  SRR4302540.1219465/1‑94 (MQ=60)
                                                                                  TCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGG            >  SRR4302540.2415171/1‑94 (MQ=60)
                                                                                   CCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGT           >  SRR4302540.4544444/1‑94 (MQ=60)
                                                                                   CCCTGAA‑TACAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGT           <  SRR4302540.3815318/94‑1 (MQ=60)
                                                                                     CTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAT         <  SRR4302540.4727504/94‑1 (MQ=60)
                                                                                     CTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTAT         >  SRR4302540.6000915/1‑94 (MQ=60)
                                                                                      TGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGGGGCCTTTTTCTTTTCTGTCAGGCGTGCTTTTTCAGCCACACCGCACACGGGTCGGTATC        >  SRR4302540.4284506/1‑94 (MQ=60)
                                                                                       GAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCA       >  SRR4302540.8940104/1‑94 (MQ=60)
                                                                                        AATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAG      <  SRR4302540.4533608/94‑1 (MQ=60)
                                                                                        AATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAG      <  SRR4302540.4964318/94‑1 (MQ=60)
                                                                                         ATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTATTCCAGCCACACCGCAAACGGTTCGGTATCAGC     >  SRR4302540.9794407/1‑94 (MQ=60)
                                                                                           TTCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCG    <  SRR4302540.3341873/94‑1 (MQ=60)
                                                                                           TTCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCG    <  SRR4302540.4159669/94‑1 (MQ=60)
                                                                                            TCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGG   >  SRR4302540.5373070/1‑94 (MQ=60)
                                                                                            TCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGG   >  SRR4302540.4069741/1‑94 (MQ=60)
                                                                                            TCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGG   <  SRR4302540.3026070/94‑1 (MQ=60)
                                                                                             CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  <  SRR4302540.5956865/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGGTAATTTTTTTAAAAATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACCGCAAACGGTTCGGTATCAGCGGC  >  NC_000913/2812766‑2812952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑