Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,978,570 (G)6→7 coding (71/1386 nt) yifK → putative amino acid/amine transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,978,5641.G97.6% 1184.1 / 16.3 374coding (65/1386 nt)yifKputative amino acid/amine transport protein
Reads supporting (aligned to +/- strand):  ref base . (3/6);  new base G (138/227);  total (141/233)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 455 total aligned reads displayed.

AAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT  >  NC_000913/3978472‑3978651
                                                                                             |                                                                                          
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt                                                                                             <  2:4432299/93‑1 (MQ=255)
  aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gg                                                                                        >  1:3999068/1‑93 (MQ=255)
  aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gg                                                                                        <  2:2703204/93‑1 (MQ=255)
  aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gg                                                                                        >  1:2490545/1‑93 (MQ=255)
  aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gg                                                                                        >  1:8530891/1‑93 (MQ=255)
   gCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGCACTCATCCCCCT‑‑ggg                                                                                       >  1:9810036/1‑93 (MQ=255)
   gCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑ggg                                                                                       <  2:2575076/93‑1 (MQ=255)
    cATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gggg                                                                                     <  2:1506390/93‑1 (MQ=255)
     aTGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑ggggg                                                                                    <  2:9537448/93‑1 (MQ=255)
     aTGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑ggggg                                                                                    <  2:7668389/93‑1 (MQ=255)
      tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gggggg                                                                                   >  2:4643551/1‑93 (MQ=255)
      tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gggggg                                                                                   >  1:949975/1‑93 (MQ=255)
        cAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑gggggggc                                                                                 <  1:1756168/93‑3 (MQ=255)
            cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCa                                                                              <  1:2167111/93‑1 (MQ=255)
             acaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAt                                                                             <  2:4761691/93‑1 (MQ=255)
              caacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt                                                                            <  2:6383314/93‑1 (MQ=255)
                acacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTgg                                                                          <  2:3850773/93‑1 (MQ=255)
                 cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc                                                                         >  1:9311584/1‑93 (MQ=255)
                 cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc                                                                         <  1:2800057/93‑1 (MQ=255)
                  acGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCg                                                                        >  2:9402393/1‑93 (MQ=255)
                   cGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGt                                                                       <  2:2021449/93‑1 (MQ=255)
                    gAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc                                                                      >  1:10038702/1‑93 (MQ=255)
                         tttATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCt                                                                 <  2:4304185/93‑1 (MQ=255)
                           tATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt                                                               <  1:223919/93‑1 (MQ=255)
                            aTGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt                                                              <  2:350169/93‑1 (MQ=255)
                              tgCAGATAACAAACCAGAGGTACAGCGTGGGCTGGAAACTCGACATATCGAACTCATCCCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa                                                            <  2:1668754/92‑1 (MQ=255)
                              ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa                                                            <  1:9156056/93‑1 (MQ=255)
                              ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa                                                            <  2:152978/93‑1 (MQ=255)
                              ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa                                                            <  2:3032062/93‑1 (MQ=255)
                              ggCACAAAACAAACCAGAGCTACAGCGGGGGCTGGAAGCTCAACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa                                                            <  2:3932702/93‑1 (MQ=255)
                               gCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGGCACCATTGGCGTCGGCCTGTTTa                                                            <  2:4182893/93‑1 (MQ=255)
                                cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg                                                          >  1:7678747/1‑93 (MQ=255)
                                 aGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgg                                                         >  1:6878750/1‑93 (MQ=255)
                                 aGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgg                                                         <  2:9006851/93‑1 (MQ=255)
                                  gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggg                                                        <  1:6228151/93‑1 (MQ=255)
                                  gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggg                                                        >  1:2630355/1‑93 (MQ=255)
                                   aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg                                                       <  2:3169948/93‑1 (MQ=255)
                                     aaCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc                                                     <  2:5996025/93‑1 (MQ=255)
                                     aaCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGAGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc                                                     >  1:9683788/1‑93 (MQ=255)
                                      aCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc                                                    >  2:2897747/1‑93 (MQ=255)
                                        aaaCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc                                                  <  1:368889/93‑1 (MQ=255)
                                           ccAGAGTTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAg                                               <  2:5206511/93‑1 (MQ=255)
                                            cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt                                              <  1:3498716/93‑1 (MQ=255)
                                             agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa                                             <  1:8414706/93‑1 (MQ=255)
                                             agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa                                             >  1:3079377/1‑93 (MQ=255)
                                             agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa                                             >  2:3258359/1‑93 (MQ=255)
                                             agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa                                             <  1:6692647/93‑1 (MQ=255)
                                              gagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACGATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAc                                            >  2:9138607/1‑93 (MQ=255)
                                                gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAccc                                          <  2:9829441/93‑1 (MQ=255)
                                                gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAccc                                          <  1:4255537/93‑1 (MQ=255)
                                                gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAccc                                          <  1:4441572/93‑1 (MQ=255)
                                                 cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt                                         <  1:9834193/93‑1 (MQ=255)
                                                 cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt                                         <  2:10002024/93‑1 (MQ=255)
                                                   aCAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCACTACCCTGa                                       >  2:7564265/1‑93 (MQ=255)
                                                      gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt                                    >  2:7485810/1‑93 (MQ=255)
                                                      gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt                                    >  1:5850981/1‑93 (MQ=255)
                                                      gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt                                    >  1:7274130/1‑93 (MQ=255)
                                                       cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGTGCCGCCAGTACCCTGAAATg                                   <  1:5994702/93‑1 (MQ=255)
                                                       cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATg                                   <  2:4338762/93‑1 (MQ=255)
                                                       cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATg                                   >  1:1878811/1‑93 (MQ=255)
                                                        gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgg                                  >  1:4543458/1‑93 (MQ=255)
                                                         tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATggg                                 <  1:9552829/93‑1 (MQ=255)
                                                         tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATggg                                 <  1:5498694/93‑1 (MQ=255)
                                                           ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggcc                               <  1:4161539/93‑1 (MQ=255)
                                                            gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccg                              <  1:6378501/93‑1 (MQ=255)
                                                            gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccg                              <  2:8888028/93‑1 (MQ=255)
                                                             cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgg                             <  1:8802138/93‑1 (MQ=255)
                                                             cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgg                             <  1:213114/93‑1 (MQ=255)
                                                             cTGGAAGCTCGACATAACGAACTCATCGCCCT‑‑GAGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgg                             <  1:8985369/93‑1 (MQ=255)
                                                              tGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccggg                            <  1:703387/93‑1 (MQ=255)
                                                              tGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccggg                            <  1:3607013/93‑1 (MQ=255)
                                                                  aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt                        <  1:7340331/93‑1 (MQ=255)
                                                                   gCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATc                       <  1:1208740/93‑1 (MQ=255)
                                                                     tCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg                     <  2:6676335/93‑1 (MQ=255)
                                                                       gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTa                   <  2:1068401/93‑1 (MQ=255)
                                                                        aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAt                  <  1:781339/93‑1 (MQ=255)
                                                                        aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAt                  >  2:8054089/1‑93 (MQ=255)
                                                                        aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAt                  <  1:4795074/93‑1 (MQ=255)
                                                                           tctCGAACTCATCGCCGTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGGACCCTGAAATGGGCGGGGCCATCCGTAttgt               <  2:4920469/91‑1 (MQ=255)
                                                                           tatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgt               <  1:1285749/93‑1 (MQ=255)
                                                                           tatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgt               >  2:1816162/1‑93 (MQ=255)
                                                                            atCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt              <  2:8209017/93‑1 (MQ=255)
                                                                            atCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt              <  2:2404762/93‑1 (MQ=255)
                                                                             tCGAACTCATCGCCCTGGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt              >  1:7995774/1‑93 (MQ=255)
                                                                             tCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgttg             >  2:7377828/1‑93 (MQ=255)
                                                                              cGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg            <  1:5243540/93‑1 (MQ=255)
                                                                                aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc          <  1:3468078/93‑1 (MQ=255)
                                                                                aaCTCATCGCCCTGGGGGGGCACCATTGGCATCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc          >  2:5460435/1‑93 (MQ=255)
                                                                                 aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCt         <  2:9303928/93‑1 (MQ=255)
                                                                                  cTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCta        <  1:1511525/93‑1 (MQ=255)
                                                                                     ccgccccG‑‑GGGGGGCCCCATTGGCTTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatc    <  2:8608097/89‑1 (MQ=255)
                                                                                     aTCGCCCTGGGGGGGCACCATGGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTatat     <  2:716556/93‑1 (MQ=255)
                                                                                      tCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatc    <  1:1659708/93‑1 (MQ=255)
                                                                                      tCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatc    >  1:1066556/1‑93 (MQ=255)
                                                                                       cGCCCTGGGGGGGCCCCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatca   <  2:3627385/93‑1 (MQ=255)
                                                                                       cGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatca   <  1:3193369/93‑1 (MQ=255)
                                                                                       cGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatca   <  2:213058/93‑1 (MQ=255)
                                                                                        gCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat  >  2:7808157/1‑93 (MQ=255)
                                                                                        gCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat  <  2:6085332/93‑1 (MQ=255)
                                                                                        gCCCTGGGGGGGCACCATTGGCGACGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat  <  2:6891632/93‑1 (MQ=255)
                                                                                             |                                                                                          
AAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT  >  NC_000913/3978472‑3978651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 240 total aligned reads displayed.
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGT  >  NC_000913/3978477‑3978662
                                                                                                  |                                                                                             
ATGCAAACACAACGCGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               <  SRR4302540.9328434/94‑1 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               >  SRR4302540.9850366/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               >  SRR4302540.959855/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               >  SRR4302540.9440382/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               <  SRR4302540.3514724/94‑1 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               >  SRR4302540.911373/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGG                                                                                               >  SRR4302540.4380077/1‑94 (MQ=60)
 TGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGG                                                                                             <  SRR4302540.4596932/94‑1 (MQ=60)
  GCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGgc                                                                                             <  SRR4302540.6024621/94‑3 (MQ=60)
   CAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGgca                                                                                            >  SRR4302540.9681653/1‑91 (MQ=60)
   CAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGgca                                                                                            <  SRR4302540.4232324/94‑4 (MQ=60)
   CAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCAAACTCATCGCCCT‑‑GGGGGGgca                                                                                            <  SRR4302540.9604936/94‑4 (MQ=60)
    AAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCAC                                                                                           >  SRR4302540.2426183/1‑94 (MQ=60)
     AACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTTGACATATCGAACTCATCGCCCTGGGGGGGCACC                                                                                          >  SRR4302540.9076697/1‑94 (MQ=60)
       CACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAT                                                                                        >  SRR4302540.9919471/1‑94 (MQ=60)
       CACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAT                                                                                        <  SRR4302540.5301964/94‑1 (MQ=60)
        ACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATT                                                                                       <  SRR4302540.7994578/94‑1 (MQ=60)
        ACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATT                                                                                       <  SRR4302540.3192482/94‑1 (MQ=60)
         CAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTG                                                                                      <  SRR4302540.9251328/94‑1 (MQ=60)
           ACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGC                                                                                    >  SRR4302540.9422737/1‑94 (MQ=60)
           ACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGC                                                                                    <  SRR4302540.2748188/94‑1 (MQ=60)
            CACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCG                                                                                   <  SRR4302540.2830299/94‑1 (MQ=60)
              CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTC                                                                                 <  SRR4302540.7830991/94‑1 (MQ=60)
              CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTC                                                                                 >  SRR4302540.10155432/1‑94 (MQ=60)
              CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTC                                                                                 >  SRR4302540.1527382/1‑94 (MQ=60)
              CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTC                                                                                 <  SRR4302540.1578926/94‑1 (MQ=60)
               GAGGCTTTATGGCAGATAACAAACCAGAGGTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCG                                                                                <  SRR4302540.2389768/94‑1 (MQ=60)
               GAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGGCACCATTGGCGTC                                                                                 <  SRR4302540.7365834/94‑1 (MQ=60)
               GAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCG                                                                                <  SRR4302540.8579113/94‑1 (MQ=60)
                AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGG                                                                               >  SRR4302540.1813735/1‑94 (MQ=60)
                AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGG                                                                               <  SRR4302540.7392366/94‑1 (MQ=60)
                AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGG                                                                               >  SRR4302540.2698209/1‑94 (MQ=60)
                AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGC                                                                               >  SRR4302540.3222202/1‑94 (MQ=60)
                 GGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAGCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGC                                                                              >  SRR4302540.2246969/1‑94 (MQ=60)
                 GGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGC                                                                              >  SRR4302540.1120340/1‑94 (MQ=60)
                   ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCT                                                                            >  SRR4302540.9966874/1‑94 (MQ=60)
                   ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCT                                                                            <  SRR4302540.9687508/94‑1 (MQ=60)
                   ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCT                                                                            >  SRR4302540.9655923/1‑94 (MQ=60)
                   ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCT                                                                            <  SRR4302540.9003311/94‑1 (MQ=60)
                   ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCT                                                                            <  SRR4302540.7022534/94‑1 (MQ=60)
                      TATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTT                                                                         <  SRR4302540.226086/94‑1 (MQ=60)
                      TATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTT                                                                         >  SRR4302540.8580253/1‑94 (MQ=60)
                       ATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTT                                                                        >  SRR4302540.9486921/1‑94 (MQ=60)
                       ATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTT                                                                        >  SRR4302540.693706/1‑94 (MQ=60)
                        TGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTT                                                                       >  SRR4302540.3505861/1‑94 (MQ=60)
                         GGCAGATAACAACCCAGAGGTACAGCGTGGGCTGGAATCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAT                                                                      <  SRR4302540.3512136/94‑1 (MQ=60)
                         GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAT                                                                      <  SRR4302540.1985183/94‑1 (MQ=60)
                         GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAT                                                                      >  SRR4302540.118619/1‑94 (MQ=60)
                         GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAT                                                                      <  SRR4302540.9123335/94‑1 (MQ=60)
                         GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAT                                                                      <  SRR4302540.8197012/94‑1 (MQ=60)
                          GCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATG                                                                     >  SRR4302540.7765611/1‑94 (MQ=60)
                           CAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGCACTCATCGCCCT‑‑GGGGGGTCACCATTGGCGTCTGCCTGTTTGTGG                                                                    >  SRR4302540.1761031/1‑94 (MQ=60)
                           CAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGG                                                                    >  SRR4302540.6954993/1‑94 (MQ=60)
                           CAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGG                                                                    <  SRR4302540.3654344/94‑1 (MQ=60)
                            AGATAACAAACCAGAGTTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGG                                                                   <  SRR4302540.3587209/94‑1 (MQ=60)
                            AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGatgagttcgataagcg                                                                   >  SRR4302540.3870660/1‑78 (MQ=60)
                            AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGG                                                                   >  SRR4302540.3001785/1‑94 (MQ=60)
                            AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGG                                                                   <  SRR4302540.7800944/94‑1 (MQ=60)
                            AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGG                                                                   >  SRR4302540.2658823/1‑94 (MQ=60)
                            AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGAGGGCACCATTGGCGTCGGCCTGTTTGTGGG                                                                   >  SRR4302540.4068595/1‑94 (MQ=60)
                             GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGG                                                                   <  SRR4302540.4243332/94‑1 (MQ=60)
                             GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGG                                                                  <  SRR4302540.6297417/94‑1 (MQ=60)
                             GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGG                                                                  <  SRR4302540.2209150/94‑1 (MQ=60)
                             GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGG                                                                  >  SRR4302540.695582/1‑94 (MQ=60)
                              ATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTAGCGTCGGCCTGTTTATGGGGG                                                                 >  SRR4302540.9352081/1‑94 (MQ=60)
                               TAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGC                                                                <  SRR4302540.3103425/94‑1 (MQ=60)
                               TAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGAGGGCACCATTGGCGTCGGCCTGTTTATGGGGGC                                                                >  SRR4302540.9797719/1‑94 (MQ=60)
                                AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCC                                                               <  SRR4302540.9956240/94‑1 (MQ=60)
                                AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCC                                                               <  SRR4302540.6866859/94‑1 (MQ=60)
                                AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCC                                                               >  SRR4302540.1751873/1‑94 (MQ=60)
                                 ACAAACCAGATTTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCG                                                              <  SRR4302540.8720969/94‑1 (MQ=60)
                                  CAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGC                                                             >  SRR4302540.9675748/1‑94 (MQ=60)
                                   AAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCC                                                            <  SRR4302540.372693/94‑1 (MQ=60)
                                    AACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCA                                                           >  SRR4302540.3542838/1‑94 (MQ=60)
                                    AACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCA                                                           >  SRR4302540.4866575/1‑94 (MQ=60)
                                     ACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCGTGGGGGGGCACCATTGGAGTCGGCTTGTTTATGGGGGCCGCCAG                                                          <  SRR4302540.7061821/94‑1 (MQ=60)
                                     ACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAG                                                          <  SRR4302540.6235262/94‑1 (MQ=60)
                                       CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTC                                                        >  SRR4302540.6539892/1‑94 (MQ=60)
                                       CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA                                                        >  SRR4302540.9126009/1‑94 (MQ=60)
                                       CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA                                                        <  SRR4302540.3536816/94‑1 (MQ=60)
                                       CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA                                                        >  SRR4302540.3113169/1‑94 (MQ=60)
                                       CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA                                                        >  SRR4302540.4263407/1‑94 (MQ=60)
                                       CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA                                                        <  SRR4302540.6360816/94‑1 (MQ=60)
                                        AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC                                                       <  SRR4302540.1894602/94‑1 (MQ=60)
                                        AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC                                                       <  SRR4302540.3091165/94‑1 (MQ=60)
                                        AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC                                                       <  SRR4302540.6766537/94‑1 (MQ=60)
                                        AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC                                                       >  SRR4302540.173032/1‑94 (MQ=60)
                                        AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC                                                       >  SRR4302540.5074555/1‑94 (MQ=60)
                                        AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC                                                       <  SRR4302540.8512377/94‑1 (MQ=60)
                                         GAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACC                                                      >  SRR4302540.3223735/1‑94 (MQ=60)
                                         GAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACC                                                      <  SRR4302540.129845/94‑1 (MQ=60)
                                          AGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTTGGCCCGTTTATGGGGGCCGCCAGTATCC                                                     >  SRR4302540.5623547/1‑94 (MQ=60)
                                          AGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCC                                                     >  SRR4302540.7769666/1‑94 (MQ=60)
                                          AGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCC                                                     >  SRR4302540.497386/1‑94 (MQ=60)
                                           GCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT                                                    <  SRR4302540.4301836/94‑1 (MQ=60)
                                           GCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT                                                    <  SRR4302540.4489704/94‑1 (MQ=60)
                                           GCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT                                                    <  SRR4302540.2537122/94‑1 (MQ=60)
                                            CTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTG                                                   <  SRR4302540.9949198/94‑1 (MQ=60)
                                            CTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTG                                                   >  SRR4302540.4483083/1‑94 (MQ=60)
                                            CTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTG                                                   >  SRR4302540.6586862/1‑94 (MQ=60)
                                             TACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGA                                                  >  SRR4302540.7527059/1‑94 (MQ=60)
                                              ACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAA                                                 >  SRR4302540.6012609/1‑94 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               <  SRR4302540.5473208/94‑1 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               <  SRR4302540.4669038/94‑1 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               >  SRR4302540.4026188/1‑94 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               >  SRR4302540.7355299/1‑94 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               >  SRR4302540.5915690/1‑94 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               <  SRR4302540.3430769/94‑1 (MQ=60)
                                                AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               <  SRR4302540.8041522/94‑1 (MQ=60)
                                                AGCGTGGGCTGGAAGCTAGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT                                               <  SRR4302540.4669037/94‑1 (MQ=60)
                                                 GCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATG                                              <  SRR4302540.9647267/94‑1 (MQ=60)
                                                 GCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATG                                              <  SRR4302540.9580181/94‑1 (MQ=60)
                                                 GCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATG                                              >  SRR4302540.1899389/1‑94 (MQ=60)
                                                  CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG                                             >  SRR4302540.3762895/1‑94 (MQ=60)
                                                  CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG                                             <  SRR4302540.2625810/94‑1 (MQ=60)
                                                  CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG                                             >  SRR4302540.4592623/1‑94 (MQ=60)
                                                  CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG                                             <  SRR4302540.6365818/94‑1 (MQ=60)
                                                  CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG                                             <  SRR4302540.6365817/94‑1 (MQ=60)
                                                  CGTGGGCTGAAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG                                             <  SRR4302540.6737317/94‑1 (MQ=60)
                                                   GTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGG                                            >  SRR4302540.1025240/1‑94 (MQ=60)
                                                    TGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGC                                           <  SRR4302540.5559235/94‑1 (MQ=60)
                                                    TGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGC                                           <  SRR4302540.4146792/94‑1 (MQ=60)
                                                    TGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGC                                           >  SRR4302540.1047500/1‑94 (MQ=60)
                                                    TGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGC                                           <  SRR4302540.9665820/94‑1 (MQ=60)
                                                     GGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCC                                          <  SRR4302540.4527529/94‑1 (MQ=60)
                                                      GGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCG                                         <  SRR4302540.4206645/94‑1 (MQ=60)
                                                      GGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCG                                         <  SRR4302540.1643008/94‑1 (MQ=60)
                                                      GCCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCG                                         <  SRR4302540.8068700/94‑1 (MQ=60)
                                                        CTGGAAGCTTGACATATCGAACTCATCGCCGTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       <  SRR4302540.2140037/94‑1 (MQ=60)
                                                        CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       >  SRR4302540.2405722/1‑94 (MQ=60)
                                                        CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       >  SRR4302540.8072347/1‑94 (MQ=60)
                                                        CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       <  SRR4302540.215200/94‑1 (MQ=60)
                                                        CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       <  SRR4302540.8903896/94‑1 (MQ=60)
                                                        CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       <  SRR4302540.1140807/94‑1 (MQ=60)
                                                        CTGGAAGCTCGACATAACGAACTCATCGCCCT‑‑GAGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG                                       <  SRR4302540.9092684/94‑1 (MQ=60)
                                                         TGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC                                      <  SRR4302540.3646428/94‑1 (MQ=60)
                                                         TGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC                                      <  SRR4302540.710937/94‑1 (MQ=60)
                                                         TGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC                                      >  SRR4302540.9348807/1‑94 (MQ=60)
                                                          GGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCC                                     >  SRR4302540.3999906/1‑94 (MQ=60)
                                                            AAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAT                                   <  SRR4302540.7317866/94‑1 (MQ=60)
                                                             AGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATC                                  <  SRR4302540.559294/94‑1 (MQ=60)
                                                             AGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATC                                  <  SRR4302540.7422240/94‑1 (MQ=60)
                                                              GCTCGACATATCGAATTCGTCGCCCGG‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCC                                 <  SRR4302540.512030/94‑1 (MQ=60)
                                                              GCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCC                                 <  SRR4302540.606873/94‑1 (MQ=60)
                                                              GCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCC                                 <  SRR4302540.1221142/94‑1 (MQ=60)
                                                                TCGACATATCGACCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGT                               <  SRR4302540.7209621/94‑1 (MQ=60)
                                                                TCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGT                               >  SRR4302540.7449820/1‑94 (MQ=60)
                                                                TCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGT                               >  SRR4302540.2242197/1‑94 (MQ=60)
                                                                TCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGT                               <  SRR4302540.2167720/94‑1 (MQ=60)
                                                                 CGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCATGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTA                              <  SRR4302540.6084265/94‑1 (MQ=60)
                                                                  GACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAT                             <  SRR4302540.4979969/94‑1 (MQ=60)
                                                                   ACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGTCATCCGTATT                            <  SRR4302540.6002697/94‑1 (MQ=60)
                                                                    CATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTG                           <  SRR4302540.138440/94‑1 (MQ=60)
                                                                     ATATCGAACTCATCGCCCGG‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGT                          <  SRR4302540.9927081/94‑1 (MQ=60)
                                                                     ATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGT                          <  SRR4302540.9927083/94‑1 (MQ=60)
                                                                     ATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGT                          >  SRR4302540.6121371/1‑94 (MQ=60)
                                                                      TATCGAACTCATCGCCCTGGGGGGGCGCCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT                         <  SRR4302540.2226930/94‑1 (MQ=60)
                                                                      TATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT                         <  SRR4302540.10074171/94‑1 (MQ=60)
                                                                      TATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT                         <  SRR4302540.1299001/94‑1 (MQ=60)
                                                                       ATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTG                        <  SRR4302540.2688776/94‑1 (MQ=60)
                                                                       ATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTG                        <  SRR4302540.216016/94‑1 (MQ=60)
                                                                       ATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTG                        >  SRR4302540.1183969/1‑94 (MQ=60)
                                                                       ATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTG                        >  SRR4302540.7157285/1‑94 (MQ=60)
                                                                        TCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGG                       <  SRR4302540.89334/94‑1 (MQ=60)
                                                                         ctcaacctcctcgcccggGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTG                        <  SRR4302540.7487624/76‑1 (MQ=60)
                                                                         CGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGC                      <  SRR4302540.3538821/94‑1 (MQ=60)
                                                                          GAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCT                     >  SRR4302540.8108886/1‑94 (MQ=60)
                                                                           AACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCT                    <  SRR4302540.9939034/94‑1 (MQ=60)
                                                                           AACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCT                    <  SRR4302540.3505834/94‑1 (MQ=60)
                                                                           AACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCT                    >  SRR4302540.9831827/1‑94 (MQ=60)
                                                                             CTCATCGCCGTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTAT                  <  SRR4302540.4548739/94‑1 (MQ=60)
                                                                             CTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTAT                  <  SRR4302540.1528225/94‑1 (MQ=60)
                                                                             CTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTAT                  >  SRR4302540.12640/1‑94 (MQ=60)
                                                                               CATCGCCCGG‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATAT                <  SRR4302540.8264638/94‑1 (MQ=60)
                                                                               CATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATAT                >  SRR4302540.4101554/1‑94 (MQ=60)
                                                                                 TCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCA              <  SRR4302540.2180296/94‑1 (MQ=60)
                                                                                 TCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCA              <  SRR4302540.1678129/94‑1 (MQ=60)
                                                                                 TCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCA              <  SRR4302540.1677790/94‑1 (MQ=60)
                                                                                  CGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT             <  SRR4302540.3228050/94‑1 (MQ=60)
                                                                                  CGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT             <  SRR4302540.7746687/94‑1 (MQ=60)
                                                                                   GCCCTGGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT             <  SRR4302540.7345580/94‑1 (MQ=60)
                                                                                   GCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATC            <  SRR4302540.8416667/94‑1 (MQ=60)
                                                                                   GCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATC            <  SRR4302540.6403609/94‑1 (MQ=60)
                                                                                    CCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG           <  SRR4302540.1077268/94‑1 (MQ=60)
                                                                                    CCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG           <  SRR4302540.6236468/94‑1 (MQ=60)
                                                                                    CCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG           >  SRR4302540.5946192/1‑94 (MQ=60)
                                                                                    CCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG           <  SRR4302540.469159/94‑1 (MQ=60)
                                                                                     CCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC          >  SRR4302540.794754/1‑94 (MQ=60)
                                                                                     CCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC          <  SRR4302540.690733/94‑1 (MQ=60)
                                                                                        ctgGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCC         <  SRR4302540.8635242/91‑1 (MQ=60)
                                                                                        ctgGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCC         >  SRR4302540.129081/4‑94 (MQ=60)
                                                                                        ctgGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCC         <  SRR4302540.1286652/91‑1 (MQ=60)
                                                                                         tgGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCG        <  SRR4302540.883200/92‑1 (MQ=60)
                                                                                         tgGGGGGGCACCATGGGCGTCGGCCTGTTTATGGGGGCCTCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCG        <  SRR4302540.2154116/92‑1 (MQ=60)
                                                                                           GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAGATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGG      <  SRR4302540.4563835/94‑1 (MQ=60)
                                                                                              GGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCT    <  SRR4302540.2381521/94‑1 (MQ=60)
                                                                                                GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTG   <  SRR4302540.7063782/94‑1 (MQ=60)
                                                                                                GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTG   <  SRR4302540.3398845/94‑1 (MQ=60)
                                                                                                 GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGT  <  SRR4302540.8583372/94‑1 (MQ=60)
                                                                                                 GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGT  <  SRR4302540.740955/94‑1 (MQ=60)
                                                                                                  |                                                                                             
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGT  >  NC_000913/3978477‑3978662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: