Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,978,570 |
(G)6→7 |
coding (71/1386 nt) |
yifK → |
putative amino acid/amine transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,978,564 | 1 | . | G | 98.3%
| 555.7
/ 1.8
| 176 | coding (65/1386 nt) | yifK | putative amino acid/amine transport protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (86/87); total (88/88) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
Only 100 of 213 total aligned reads displayed.
AAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT > NC_000913/3978472‑3978651
|
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t > 1:3828142/1‑93 (MQ=255)
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t < 2:5577821/93‑1 (MQ=255)
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t < 1:5625347/93‑1 (MQ=255)
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t > 2:5530954/1‑93 (MQ=255)
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t > 1:1865377/1‑93 (MQ=255)
aaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑g < 1:105423/93‑1 (MQ=255)
aaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑g > 1:2465846/1‑93 (MQ=255)
aaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑g < 2:548406/93‑1 (MQ=255)
aaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑g > 1:4457268/1‑93 (MQ=255)
aaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑g < 2:3845078/93‑1 (MQ=255)
aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑gg < 1:3298574/93‑1 (MQ=255)
cATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑g < 2:6046870/93‑1 (MQ=255)
aTGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑gg < 2:5907025/93‑1 (MQ=255)
tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggg > 1:1723187/1‑93 (MQ=255)
tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggg > 2:3882213/1‑93 (MQ=255)
tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggg > 1:3082197/1‑93 (MQ=255)
cAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggggc < 1:221584/93‑3 (MQ=255)
cAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggggc > 1:4601725/1‑91 (MQ=255)
cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCa < 1:4857324/93‑1 (MQ=255)
cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCa > 2:2982818/1‑93 (MQ=255)
cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCa < 2:6007456/93‑1 (MQ=255)
cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCa > 1:2295037/1‑93 (MQ=255)
acaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCAt < 1:2707448/93‑1 (MQ=255)
acaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCAt < 1:1903208/93‑1 (MQ=255)
aacacGAGGATTTCTGGCCGATAACAAACCAGGCACAGAGCGTGGGCTGGAAGCGCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTg < 2:3835814/93‑1 (MQ=255)
aacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTg > 2:3761670/1‑93 (MQ=255)
aacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTg < 2:1970249/93‑1 (MQ=255)
acacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTgg < 1:3352847/93‑1 (MQ=255)
acacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTgg > 2:4646019/1‑93 (MQ=255)
cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGc < 2:2645241/93‑1 (MQ=255)
cGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGt > 2:120142/1‑93 (MQ=255)
ggATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCgg > 2:4549592/1‑93 (MQ=255)
tttATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCt > 2:3827294/1‑93 (MQ=255)
tATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGt < 1:3191983/93‑1 (MQ=255)
tGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGttt > 1:5730641/1‑93 (MQ=255)
ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTa > 1:5079684/1‑93 (MQ=255)
gCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTAt > 1:4561300/1‑93 (MQ=255)
cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATg < 2:186756/93‑1 (MQ=255)
aGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATgg < 1:1660422/93‑1 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGGCTGTTTATggg > 2:4036561/1‑93 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggg < 1:1503311/93‑1 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggg < 2:5691859/93‑1 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggg > 2:6225572/1‑93 (MQ=255)
aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATgggg > 1:5903132/1‑93 (MQ=255)
aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATgggg < 1:2503193/93‑1 (MQ=255)
tAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggggg > 2:2172821/1‑93 (MQ=255)
aaCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 1:38796/93‑1 (MQ=255)
aaCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 1:3720439/93‑1 (MQ=255)
aCAAACCAGAGCTACGGCGTGGGCTGGAAGCTCGACATATCGAACTCACCGCCCGG‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc < 2:1160063/93‑1 (MQ=255)
aCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc > 1:1695123/1‑93 (MQ=255)
aacccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCCCCATTGGCGTCGGCCTGTTTATGGGGgccgc < 1:3596372/90‑1 (MQ=255)
aaCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc > 2:4417988/1‑93 (MQ=255)
aCCAGAGCTACAGCGTGGTCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:813798/93‑1 (MQ=255)
aCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 2:4335899/93‑1 (MQ=255)
ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAg < 2:4823677/93‑1 (MQ=255)
ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAg < 1:5929192/93‑1 (MQ=255)
ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAg > 1:2772439/1‑93 (MQ=255)
cAGAGCTAAAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:1180968/93‑1 (MQ=255)
gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAccc < 1:6022694/93‑1 (MQ=255)
cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑GGGTGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt > 1:2404874/1‑93 (MQ=255)
aCAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGa < 1:1261706/93‑1 (MQ=255)
aGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa < 1:6154446/93‑1 (MQ=255)
aGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa > 2:2095949/1‑93 (MQ=255)
aGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa > 1:4409141/1‑93 (MQ=255)
gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt > 2:1031397/1‑93 (MQ=255)
cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATg < 2:2355832/93‑1 (MQ=255)
cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATg < 1:2677017/93‑1 (MQ=255)
gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgg < 1:4533203/93‑1 (MQ=255)
tGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATggg > 1:693319/1‑93 (MQ=255)
gggCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggc > 2:504979/1‑93 (MQ=255)
gggCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggc > 2:4490806/1‑93 (MQ=255)
ggCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggcc < 2:1822458/93‑1 (MQ=255)
gAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc < 2:4867284/93‑1 (MQ=255)
aaGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCa > 2:672718/1‑93 (MQ=255)
gCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATc < 1:801869/93‑1 (MQ=255)
cTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATcc < 1:5523/93‑1 (MQ=255)
cTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATcc > 2:1521501/1‑93 (MQ=255)
gACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGtt > 2:5248892/1‑92 (MQ=255)
gACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTa > 1:3990283/1‑93 (MQ=255)
aCATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAt > 1:5738198/1‑93 (MQ=255)
aCATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAt > 1:4797052/1‑93 (MQ=255)
aCATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAt < 1:3969989/93‑1 (MQ=255)
cATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAtt < 1:53593/93‑1 (MQ=255)
atatCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg < 2:4973564/93‑1 (MQ=255)
atCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt > 1:3975394/1‑93 (MQ=255)
tCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgttg < 1:2575869/93‑1 (MQ=255)
cGAACTCATCGCCC‑TGGGG‑GGGCGCCTTTGGCGTCGCCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg < 1:2648421/93‑1 (MQ=255)
cGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg < 1:5588440/93‑1 (MQ=255)
cGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg < 2:2914431/93‑1 (MQ=255)
aaCTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc > 2:2736345/1‑93 (MQ=255)
aaCTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc > 2:5298928/1‑93 (MQ=255)
tCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTCTTGTTGGCCtat > 1:4714973/1‑93 (MQ=255)
cATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCtata < 2:3606301/93‑1 (MQ=255)
cATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCtata < 2:888456/93‑1 (MQ=255)
aTCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTCTTGTTGGCCTatat > 2:1256916/1‑93 (MQ=255)
tCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatc > 1:2306028/1‑93 (MQ=255)
cGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatca < 2:5424821/93‑1 (MQ=255)
gCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCCTCCGTAGTGTTGGCCTATatcat > 2:2079624/1‑93 (MQ=255)
gCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat < 1:5812757/93‑1 (MQ=255)
gCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat < 2:859243/93‑1 (MQ=255)
|
AAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT > NC_000913/3978472‑3978651
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT > NC_000913/3978477‑3978663
|
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG > SRR4302533.3101106/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG < SRR4302533.3647606/94‑1 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG > SRR4302533.1733639/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG > SRR4302533.1703971/1‑94 (MQ=60)
GCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGgc > SRR4302533.4629605/1‑92 (MQ=60)
CAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGgca < SRR4302533.222971/94‑4 (MQ=60)
AAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGTGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCAC < SRR4302533.4461803/94‑1 (MQ=60)
AAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGgcgc > SRR4302533.324518/1‑90 (MQ=60)
ACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCA > SRR4302533.2309250/1‑94 (MQ=60)
CACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCAT > SRR4302533.992832/1‑94 (MQ=60)
CACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCAT < SRR4302533.4886762/94‑1 (MQ=60)
CACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCAT < SRR4302533.5867622/94‑1 (MQ=60)
ACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATT < SRR4302533.2724058/94‑1 (MQ=60)
ACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATT < SRR4302533.1914822/94‑1 (MQ=60)
CAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTG > SRR4302533.4351238/1‑94 (MQ=60)
AACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGCACCATTGGC > SRR4302533.5531762/1‑94 (MQ=60)
ACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGC < SRR4302533.3373561/94‑1 (MQ=60)
ACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGC < SRR4302533.1789843/94‑1 (MQ=60)
ACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGT > SRR4302533.1284529/1‑94 (MQ=60)
CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTC < SRR4302533.1112485/94‑1 (MQ=60)
GAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCG < SRR4302533.2310156/94‑1 (MQ=60)
GAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCG < SRR4302533.1890046/94‑1 (MQ=60)
AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGG > SRR4302533.6142564/1‑94 (MQ=60)
GGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGC > SRR4302533.983230/1‑94 (MQ=60)
ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCT > SRR4302533.790070/1‑94 (MQ=60)
ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCT > SRR4302533.396155/1‑94 (MQ=60)
TATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCGTCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTT < SRR4302533.5668332/94‑1 (MQ=60)
TATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTT < SRR4302533.3211618/94‑1 (MQ=60)
ATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTT > SRR4302533.5765242/1‑94 (MQ=60)
TGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTA > SRR4302533.5110389/1‑94 (MQ=60)
GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTAT > SRR4302533.4588963/1‑94 (MQ=60)
GCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATG > SRR4302533.1242842/1‑94 (MQ=60)
AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGG < SRR4302533.3876160/94‑1 (MQ=60)
AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGG > SRR4302533.17158/1‑94 (MQ=60)
AGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGG < SRR4302533.1670461/94‑1 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGG < SRR4302533.1512376/94‑1 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGG > SRR4302533.4600079/1‑94 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGG > SRR4302533.5045804/1‑94 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGG > SRR4302533.5938781/1‑94 (MQ=60)
ATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGG < SRR4302533.2518627/94‑1 (MQ=60)
TAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGC > SRR4302533.2371316/1‑94 (MQ=60)
TAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGC < SRR4302533.1911482/94‑1 (MQ=60)
AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCC < SRR4302533.3743271/94‑1 (MQ=60)
AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCC < SRR4302533.39052/94‑1 (MQ=60)
AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCC > SRR4302533.1705390/1‑94 (MQ=60)
ACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCG < SRR4302533.3032713/94‑1 (MQ=60)
AACCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCCCCATTGGCGTCGGCCTGTTTATGGGGGCCGCC < SRR4302533.3618499/94‑1 (MQ=60)
ACCAGAGCTACAGCGTGGTCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAG < SRR4302533.818560/94‑1 (MQ=60)
ACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAG > SRR4302533.2789451/1‑94 (MQ=60)
CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGT < SRR4302533.5965033/94‑1 (MQ=60)
CAGAGCTAAAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA < SRR4302533.1188061/94‑1 (MQ=60)
GCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT < SRR4302533.6059192/94‑1 (MQ=60)
GCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGTGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT > SRR4302533.2419724/1‑94 (MQ=60)
CTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTG < SRR4302533.2546206/94‑1 (MQ=60)
ACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAA > SRR4302533.3102358/1‑94 (MQ=60)
ACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAA > SRR4302533.4753464/1‑94 (MQ=60)
ACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAA < SRR4302533.1269250/94‑1 (MQ=60)
CAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAA > SRR4302533.3999579/1‑94 (MQ=60)
CAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAA > SRR4302533.4435767/1‑94 (MQ=60)
AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT > SRR4302533.3841012/1‑94 (MQ=60)
AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT < SRR4302533.6191477/94‑1 (MQ=60)
GCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATG < SRR4302533.5949840/94‑1 (MQ=60)
CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG > SRR4302533.495478/1‑94 (MQ=60)
CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG > SRR4302533.2620150/1‑94 (MQ=60)
CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG < SRR4302533.2693430/94‑1 (MQ=60)
CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG < SRR4302533.5981617/94‑1 (MQ=60)
GTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGG < SRR4302533.5152533/94‑1 (MQ=60)
GTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGG > SRR4302533.2702461/1‑94 (MQ=60)
GTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGG < SRR4302533.4560651/94‑1 (MQ=60)
GTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGG > SRR4302533.697415/1‑94 (MQ=60)
GCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGG < SRR4302533.5768640/94‑1 (MQ=60)
CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG > SRR4302533.40048/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC > SRR4302533.5594491/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC < SRR4302533.812482/94‑1 (MQ=60)
GGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCC > SRR4302533.2650503/1‑94 (MQ=60)
AAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAT < SRR4302533.5799993/94‑1 (MQ=60)
GCTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCC < SRR4302533.806582/94‑1 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG > SRR4302533.2682734/1‑94 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG < SRR4302533.5575/94‑1 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG < SRR4302533.251729/94‑1 (MQ=60)
CGACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTA > SRR4302533.4014586/1‑94 (MQ=60)
GACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAT < SRR4302533.4576959/94‑1 (MQ=60)
GACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAT > SRR4302533.4826109/1‑94 (MQ=60)
GACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAT > SRR4302533.5772829/1‑94 (MQ=60)
ACATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATT < SRR4302533.3994166/94‑1 (MQ=60)
CATATCGAACTCATCGCCCTGGGG‑GGGCCCCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTG < SRR4302533.3420087/94‑1 (MQ=60)
CATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTG < SRR4302533.53956/94‑1 (MQ=60)
ATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGT < SRR4302533.350984/94‑1 (MQ=60)
ATATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGT > SRR4302533.24607/1‑94 (MQ=60)
TATCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT > SRR4302533.3999596/1‑94 (MQ=60)
TCGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGG < SRR4302533.2591715/94‑1 (MQ=60)
CGAACTCATCGCCCTGGGG‑GGGCGCCTTTGGCGTCGCCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGC < SRR4302533.2664692/94‑1 (MQ=60)
CGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGC > SRR4302533.5645874/1‑94 (MQ=60)
CGAACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGC < SRR4302533.5622204/94‑1 (MQ=60)
AACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCT > SRR4302533.2222254/1‑94 (MQ=60)
ACTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTA < SRR4302533.2301321/94‑1 (MQ=60)
CTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTCTTGTTGGCCTAT > SRR4302533.4743548/1‑94 (MQ=60)
CTCATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTAT < SRR4302533.450434/94‑1 (MQ=60)
CATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATAT > SRR4302533.4830739/1‑94 (MQ=60)
ATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATC > SRR4302533.2320315/1‑94 (MQ=60)
ATCGCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATC < SRR4302533.6309353/94‑1 (MQ=60)
GCCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATC < SRR4302533.5847864/94‑1 (MQ=60)
CCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTTTGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCC > SRR4302533.322177/1‑94 (MQ=60)
CCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG < SRR4302533.4085037/94‑1 (MQ=60)
CCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG > SRR4302533.1497802/1‑94 (MQ=60)
CCCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTAGGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG < SRR4302533.256458/94‑1 (MQ=60)
CCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302533.5972796/1‑94 (MQ=60)
CCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302533.4766245/1‑94 (MQ=60)
CCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302533.4764015/1‑94 (MQ=60)
CCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302533.2712653/1‑94 (MQ=60)
CCTGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302533.3496169/1‑94 (MQ=60)
ctgGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCC > SRR4302533.6014063/4‑94 (MQ=60)
tgGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCG > SRR4302533.1957755/3‑94 (MQ=60)
G‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGG < SRR4302533.3434808/94‑1 (MQ=60)
GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGG < SRR4302533.1297120/94‑1 (MQ=60)
GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTG > SRR4302533.273632/1‑94 (MQ=60)
GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGT < SRR4302533.1349783/94‑1 (MQ=60)
GCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT > SRR4302533.3405073/1‑94 (MQ=60)
GCACCATTGGAGTCGGCCTATTAATGGGAGCCGCCAGTACCCAGTTGTGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT < SRR4302533.6344602/94‑1 (MQ=60)
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ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT > NC_000913/3978477‑3978663
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
