Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,486 2 bp→GC coding (316‑317/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,4860CG100.0% 1327.0 / NA 410R106A (CGG→GCG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (190/220);  total (190/220)
*NC_0009134,001,4870GC99.8% 1321.5 / NA 409R106A (CGG→GCG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (188/220);  total (189/220)
Fisher's exact test for biased strand distribution p-value = 4.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 420 total aligned reads displayed.

AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT  >  NC_000913/4001399‑4001574
                                                                                       ||                                                                                       
agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                                                                                     >  2:6421223/1‑93 (MQ=255)
   caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                                                                                  >  1:117914/1‑93 (MQ=255)
    aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa                                                                                 <  2:5078375/93‑1 (MQ=255)
     ttGCATCCGTGCGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat                                                                                <  1:8220750/93‑1 (MQ=255)
      tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata                                                                               >  1:7623182/1‑93 (MQ=255)
      tGCAGCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata                                                                               <  1:2243156/93‑1 (MQ=255)
       gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat                                                                              <  2:6973508/93‑1 (MQ=255)
       gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTACACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat                                                                              <  2:3967429/93‑1 (MQ=255)
         aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg                                                                            <  1:2357832/93‑1 (MQ=255)
          tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt                                                                           <  2:911184/93‑1 (MQ=255)
          tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt                                                                           >  1:5493480/1‑93 (MQ=255)
            cggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGa                                                                         <  2:5694280/93‑1 (MQ=255)
             ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt                                                                        <  1:8760476/93‑1 (MQ=255)
              gcggAATCGCTCGCCGACGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt                                                                       <  2:2862808/93‑1 (MQ=255)
               cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTg                                                                      <  1:2722359/93‑1 (MQ=255)
               cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGAGATTg                                                                      >  1:530916/1‑93 (MQ=255)
                 gAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGtt                                                                    <  2:9292663/93‑1 (MQ=255)
                    tcgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAc                                                                 <  2:4921145/89‑1 (MQ=255)
                    tcgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAc                                                                 <  1:9521308/89‑1 (MQ=255)
                    tcgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAc                                                                 <  2:6684867/89‑1 (MQ=255)
                    tcgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAc                                                                 >  2:8103680/5‑93 (MQ=255)
                     cgctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAcc                                                                <  1:796314/90‑1 (MQ=255)
                      gctCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCg                                                               <  2:3332976/91‑1 (MQ=255)
                           ccGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAg                                                          >  1:639083/1‑93 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGa                                                         <  1:1481344/93‑1 (MQ=255)
                            cGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGa                                                         >  2:6409943/1‑93 (MQ=255)
                             gAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAt                                                        >  1:3697920/1‑93 (MQ=255)
                             gAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAt                                                        <  1:7819975/93‑1 (MQ=255)
                              aGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATa                                                       >  2:1340124/1‑93 (MQ=255)
                              aGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATa                                                       <  2:9718147/93‑1 (MQ=255)
                                gAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATaaa                                                     >  1:7169991/1‑93 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                   <  2:1876681/93‑1 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                   <  2:9445032/93‑1 (MQ=255)
                                  aaaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                   >  2:5223626/1‑93 (MQ=255)
                                  aaaCCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACa                                                   <  1:5575048/93‑1 (MQ=255)
                                   aaTCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAg                                                  >  1:3608406/1‑93 (MQ=255)
                                    atcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGt                                                 <  1:1003374/93‑1 (MQ=255)
                                    atcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGt                                                 <  2:2536211/93‑1 (MQ=255)
                                     tcatcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTa                                                <  2:4663265/93‑1 (MQ=255)
                                      catcCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAg                                               <  2:5247979/93‑1 (MQ=255)
                                         ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCa                                            <  2:7626329/93‑1 (MQ=255)
                                         ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCa                                            <  2:1600301/93‑1 (MQ=255)
                                         ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCa                                            >  1:3271008/1‑93 (MQ=255)
                                         ccccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCa                                            >  2:6021077/1‑93 (MQ=255)
                                           ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGt                                          <  1:4180007/93‑1 (MQ=255)
                                           ccAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGt                                          <  2:5829345/93‑1 (MQ=255)
                                            cAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGtt                                         >  2:54347/1‑93 (MQ=255)
                                                acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGcca                                     >  1:5675383/1‑93 (MQ=255)
                                                acaATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGcca                                     <  2:8778169/93‑1 (MQ=255)
                                                 caATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccac                                    >  2:3030750/1‑93 (MQ=255)
                                                 caATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccac                                    >  1:9233987/1‑93 (MQ=255)
                                                 caATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGCTGccac                                    >  2:1118600/1‑93 (MQ=255)
                                                  aaTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacc                                   >  1:4127871/1‑93 (MQ=255)
                                                  aaTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacc                                   >  2:3757437/1‑93 (MQ=255)
                                                   aTGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGccacca                                  >  2:8038972/1‑93 (MQ=255)
                                                    tGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCaa                                 >  2:1725119/1‑93 (MQ=255)
                                                     gTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAt                                >  1:6503905/1‑93 (MQ=255)
                                                      ttCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATc                               >  1:7402471/1‑93 (MQ=255)
                                                       tCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCa                              >  1:6114087/1‑93 (MQ=255)
                                                        cACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAg                             <  1:4995995/93‑1 (MQ=255)
                                                         aCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGc                            >  1:939989/1‑93 (MQ=255)
                                                          ccAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa                           <  2:6243980/93‑1 (MQ=255)
                                                          ccAGCGGGTTAATAAAGGAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCa                           <  1:4402291/93‑1 (MQ=255)
                                                            aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg                         <  1:2943086/93‑1 (MQ=255)
                                                            aGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACg                         >  2:7106387/1‑93 (MQ=255)
                                                             gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAACCAGTAGCCAGTTGCCACCAATCAGCACgg                        <  2:3260621/93‑1 (MQ=255)
                                                             gCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACgg                        >  1:3788392/1‑93 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                       <  1:6166058/93‑1 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                       <  1:4690196/93‑1 (MQ=255)
                                                              cGGGTTAATAAAGTAACCAAGGCGCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                       <  2:5533157/93‑1 (MQ=255)
                                                              cGGATTAATAAAGTAACCAAGGGTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGc                       <  1:5220292/93‑1 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                      >  1:4530003/1‑93 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                      <  2:7934336/93‑1 (MQ=255)
                                                               gggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCa                      <  1:5852734/93‑1 (MQ=255)
                                                                ggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCag                     >  2:2364653/1‑93 (MQ=255)
                                                                ggTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCag                     <  1:9685551/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                    <  1:6076074/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                    <  2:4182797/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                    <  1:1367255/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                    <  2:8915294/93‑1 (MQ=255)
                                                                 gTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCaga                    <  1:484848/93‑1 (MQ=255)
                                                                  ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag                   <  1:8513533/93‑1 (MQ=255)
                                                                  ttAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCagag                   >  2:8341513/1‑93 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                 <  1:7335416/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                 <  2:9651183/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                 <  2:7395004/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                 <  2:6733161/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                 <  2:1424961/93‑1 (MQ=255)
                                                                    aataaAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAc                 <  2:4318024/93‑1 (MQ=255)
                                                                        aaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGcc             >  2:3422031/1‑93 (MQ=255)
                                                                        aaGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGcc             >  1:4219952/1‑93 (MQ=255)
                                                                         aGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCa            <  1:8819352/93‑1 (MQ=255)
                                                                          gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg           >  1:2666717/1‑93 (MQ=255)
                                                                          gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg           <  2:1821568/93‑1 (MQ=255)
                                                                          gTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAg           >  1:1785742/1‑93 (MQ=255)
                                                                            aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa         >  1:9084836/1‑93 (MQ=255)
                                                                            aaCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCa         <  1:6919537/93‑1 (MQ=255)
                                                                             aCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCaa        >  1:3498013/1‑92 (MQ=255)
                                                                                 aGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaa    <  2:1543686/93‑1 (MQ=255)
                                                                                 aGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATaaaa    <  2:3592712/93‑1 (MQ=255)
                                                                                       ||                                                                                       
AGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT  >  NC_000913/4001399‑4001574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 229 total aligned reads displayed.
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  NC_000913/4001393‑4001575
                                                                                             |                                                                                         
CCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           <  SRR4302540.7864194/94‑1 (MQ=60)
CCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           <  SRR4302540.2000833/94‑1 (MQ=60)
ACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                                                                                           >  SRR4302540.1810836/1‑94 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      >  SRR4302540.8061472/1‑94 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      <  SRR4302540.5268266/94‑1 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      >  SRR4302540.8385982/1‑94 (MQ=60)
     CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                                                                                      <  SRR4302540.7494601/94‑1 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302540.8883726/1‑94 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302540.4228243/1‑94 (MQ=60)
      AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGAAACCAAGGCTCGCTTCCA                                                                                     >  SRR4302540.6679674/1‑94 (MQ=60)
       GCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAG                                                                                    >  SRR4302540.9523447/1‑94 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                                                                                   <  SRR4302540.10056182/94‑1 (MQ=60)
        CCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGC                                                                                   >  SRR4302540.2212500/1‑94 (MQ=60)
         CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                                                                                  >  SRR4302540.1345693/1‑94 (MQ=60)
          ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                                                                                 >  SRR4302540.2290445/1‑94 (MQ=60)
           ttgcatccgtgcgaatcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATA                                                                                <  SRR4302540.8316302/75‑1 (MQ=60)
           TTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATA                                                                                >  SRR4302540.7708916/1‑94 (MQ=60)
           TTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATA                                                                                >  SRR4302540.4444023/1‑94 (MQ=60)
            TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               >  SRR4302540.2706800/1‑94 (MQ=60)
            TGCAGCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT                                                                               <  SRR4302540.2267262/94‑1 (MQ=60)
              CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG                                                                             >  SRR4302540.97572/1‑94 (MQ=60)
              CATCCGGCGGAATCGCTCGCAGAGGAAAATCATCCCCAGCACAATGTTCGCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG                                                                             <  SRR4302540.4507791/94‑1 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            <  SRR4302540.2383229/94‑1 (MQ=60)
               ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT                                                                            >  SRR4302540.5553959/1‑94 (MQ=60)
                TCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG                                                                           <  SRR4302540.9512125/94‑1 (MQ=60)
                  CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT                                                                         >  SRR4302540.3889839/1‑94 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302540.8862060/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302540.8664897/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302540.8862059/94‑1 (MQ=60)
                   GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT                                                                        <  SRR4302540.2306426/94‑1 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG                                                                       <  SRR4302540.1630691/94‑1 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG                                                                       >  SRR4302540.536657/1‑94 (MQ=60)
                    GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGAGATTG                                                                       >  SRR4302540.536656/1‑94 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      <  SRR4302540.2751709/94‑1 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      >  SRR4302540.7258094/1‑94 (MQ=60)
                     CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT                                                                      >  SRR4302540.9892918/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302540.3524943/1‑94 (MQ=60)
                      GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT                                                                     >  SRR4302540.6855680/1‑94 (MQ=60)
                        AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA                                                                   <  SRR4302540.1789858/94‑1 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATACAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  >  SRR4302540.6274625/6‑94 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  <  SRR4302540.4300511/89‑1 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  <  SRR4302540.5227197/89‑1 (MQ=60)
                         atcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAC                                                                  >  SRR4302540.6274624/6‑94 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302540.3797754/90‑1 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 >  SRR4302540.4182755/5‑94 (MQ=60)
                          tcgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302540.9634056/90‑1 (MQ=60)
                          acgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACC                                                                 <  SRR4302540.1472162/90‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                >  SRR4302540.950731/4‑94 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302540.804771/91‑1 (MQ=60)
                           cgcTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCG                                                                <  SRR4302540.7313446/91‑1 (MQ=60)
                              TCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCC                                                             <  SRR4302540.5307440/94‑1 (MQ=60)
                               CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            >  SRR4302540.5851250/1‑94 (MQ=60)
                               CGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            <  SRR4302540.9256558/94‑1 (MQ=60)
                               CGCCGAGGAAAATCATCCCCAGCACAATGGTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            <  SRR4302540.3423120/94‑1 (MQ=60)
                               CGCCGAGGAAAACCATCCCCAGCCCAAGGTTCCCCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCA                                                            <  SRR4302540.2713311/94‑1 (MQ=60)
                                GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCCTATTGGGATTGTTCACCGCCAAG                                                           >  SRR4302540.5431121/1‑94 (MQ=60)
                                GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAG                                                           >  SRR4302540.645883/1‑94 (MQ=60)
                                GCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAG                                                           >  SRR4302540.645884/1‑94 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCGTATGGTGATTGTTCACCGCCCAGAT                                                         <  SRR4302540.4734398/94‑1 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         >  SRR4302540.3738287/1‑94 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         >  SRR4302540.439394/1‑94 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         <  SRR4302540.1596959/94‑1 (MQ=60)
                                  CGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGAT                                                         <  SRR4302540.2986041/94‑1 (MQ=60)
                                   GAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATA                                                        >  SRR4302540.2880269/1‑94 (MQ=60)
                                     GGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAA                                                      >  SRR4302540.8178482/1‑94 (MQ=60)
                                     GGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAA                                                      >  SRR4302540.7249916/1‑94 (MQ=60)
                                      GAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAAC                                                     >  SRR4302540.7460436/1‑94 (MQ=60)
                                      GAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAAC                                                     <  SRR4302540.5556721/94‑1 (MQ=60)
                                       aaaaacaatcccaggaccaagttccccaggGGGTTAAAAAAGGAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    <  SRR4302540.1164382/64‑1 (MQ=60)
                                       AAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACA                                                    <  SRR4302540.3079049/94‑1 (MQ=60)
                                        AAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   >  SRR4302540.6224651/1‑94 (MQ=60)
                                        AAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   >  SRR4302540.3647838/1‑94 (MQ=60)
                                        AAATCAGCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302540.920317/94‑1 (MQ=60)
                                        AAACCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAG                                                   <  SRR4302540.5636425/94‑1 (MQ=60)
                                         AATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGT                                                  >  SRR4302540.4682606/1‑94 (MQ=60)
                                          ATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302540.1485140/94‑1 (MQ=60)
                                          ATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302540.8005299/94‑1 (MQ=60)
                                          ATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTA                                                 <  SRR4302540.1013559/94‑1 (MQ=60)
                                           TCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAG                                                >  SRR4302540.1642555/1‑94 (MQ=60)
                                            CATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGC                                               <  SRR4302540.4653664/94‑1 (MQ=60)
                                            CATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGC                                               <  SRR4302540.7157046/94‑1 (MQ=60)
                                              TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCA                                             >  SRR4302540.3306713/1‑94 (MQ=60)
                                              TCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCA                                             <  SRR4302540.3666643/94‑1 (MQ=60)
                                                CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           >  SRR4302540.7874118/1‑94 (MQ=60)
                                                CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           >  SRR4302540.11830/1‑94 (MQ=60)
                                                CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           <  SRR4302540.6501750/94‑1 (MQ=60)
                                                CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           >  SRR4302540.7338557/1‑94 (MQ=60)
                                                CCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGT                                           >  SRR4302540.3294270/1‑94 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATTGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302540.1150531/94‑1 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          >  SRR4302540.9699592/1‑94 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          >  SRR4302540.8929163/1‑94 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302540.6181733/94‑1 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302540.6019760/94‑1 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302540.7086072/94‑1 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          >  SRR4302540.2759780/1‑94 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302540.4225403/94‑1 (MQ=60)
                                                 CCAGCACAATGTTCACCAGCGGGTTAATAAAGCAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTT                                          <  SRR4302540.4225114/94‑1 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         >  SRR4302540.9180056/1‑94 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         >  SRR4302540.5552305/1‑94 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         <  SRR4302540.1145183/94‑1 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         <  SRR4302540.5923015/94‑1 (MQ=60)
                                                  CAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTG                                         <  SRR4302540.6896994/94‑1 (MQ=60)
                                                   AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGC                                        >  SRR4302540.3756429/1‑94 (MQ=60)
                                                   AGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGC                                        >  SRR4302540.9401179/1‑94 (MQ=60)
                                                     CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      <  SRR4302540.7200737/94‑1 (MQ=60)
                                                     CACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCA                                      >  SRR4302540.5737875/1‑94 (MQ=60)
                                                      ACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCAC                                     >  SRR4302540.9344641/1‑94 (MQ=60)
                                                       CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302540.7720351/1‑94 (MQ=60)
                                                       CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302540.1496822/1‑94 (MQ=60)
                                                       CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302540.2841912/1‑94 (MQ=60)
                                                       CAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACC                                    >  SRR4302540.5019570/1‑94 (MQ=60)
                                                         ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAA                                  >  SRR4302540.5808922/1‑94 (MQ=60)
                                                         ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAA                                  >  SRR4302540.8701348/1‑94 (MQ=60)
                                                         ATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAA                                  >  SRR4302540.748447/1‑94 (MQ=60)
                                                          TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCATCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAT                                 <  SRR4302540.5318976/94‑1 (MQ=60)
                                                          TGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAAT                                 <  SRR4302540.6166159/94‑1 (MQ=60)
                                                           GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                >  SRR4302540.7484941/1‑94 (MQ=60)
                                                           GTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                <  SRR4302540.5185919/94‑1 (MQ=60)
                                                           GTTCACCAGCGGCTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATC                                <  SRR4302540.4898747/94‑1 (MQ=60)
                                                            TTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCA                               <  SRR4302540.5698462/94‑1 (MQ=60)
                                                            TTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCA                               >  SRR4302540.6182172/1‑94 (MQ=60)
                                                             TCACCAGCGCGTTAATAAAGTAACCTAGGCTCGCTTCCAGCAAATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGGGCCCACCAATCAG                              <  SRR4302540.4224494/94‑1 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302540.949818/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302540.9965765/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302540.7657543/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302540.6369440/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302540.2221123/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             >  SRR4302540.5696153/1‑94 (MQ=60)
                                                              CACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGC                             <  SRR4302540.5050080/94‑1 (MQ=60)
                                                               ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            <  SRR4302540.5993840/94‑1 (MQ=60)
                                                               ACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCA                            <  SRR4302540.7442008/94‑1 (MQ=60)
                                                                CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           >  SRR4302540.4108286/1‑94 (MQ=60)
                                                                CCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302540.4450029/94‑1 (MQ=60)
                                                                CCAGCGGGTTAATAAAGGAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAC                           <  SRR4302540.4450028/94‑1 (MQ=60)
                                                                 CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          >  SRR4302540.8050499/1‑94 (MQ=60)
                                                                 CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          >  SRR4302540.4593255/1‑94 (MQ=60)
                                                                 CAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          <  SRR4302540.5040099/94‑1 (MQ=60)
                                                                 CAGCGGGTGAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACG                          <  SRR4302540.1208640/94‑1 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG                         >  SRR4302540.1021130/1‑94 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG                         <  SRR4302540.2975437/94‑1 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG                         >  SRR4302540.3829699/1‑94 (MQ=60)
                                                                  AGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGG                         >  SRR4302540.6149883/1‑94 (MQ=60)
                                                                    GGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.5510267/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.6234762/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.9452246/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.3320405/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.3537692/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.6563047/94‑1 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       >  SRR4302540.4579039/1‑94 (MQ=60)
                                                                    CGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.4740350/94‑1 (MQ=60)
                                                                    CGGATTAATAAAGTAACCAAGGGTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCA                       <  SRR4302540.5277202/94‑1 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302540.8870506/1‑94 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      <  SRR4302540.5732057/94‑1 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      <  SRR4302540.5917467/94‑1 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302540.9779799/1‑94 (MQ=60)
                                                                     GGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAG                      >  SRR4302540.3446445/1‑94 (MQ=60)
                                                                      GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA                     <  SRR4302540.8567004/94‑1 (MQ=60)
                                                                      GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA                     <  SRR4302540.9799494/94‑1 (MQ=60)
                                                                      GGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGA                     >  SRR4302540.7434906/1‑94 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302540.2541078/94‑1 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302540.6143640/94‑1 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302540.1381732/94‑1 (MQ=60)
                                                                       GTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAG                    <  SRR4302540.490035/94‑1 (MQ=60)
                                                                        TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA                   >  SRR4302540.2223128/1‑94 (MQ=60)
                                                                        TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA                   <  SRR4302540.8612472/94‑1 (MQ=60)
                                                                        TTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGA                   <  SRR4302540.8612474/94‑1 (MQ=60)
                                                                         TAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  <  SRR4302540.503129/94‑1 (MQ=60)
                                                                         TAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGAC                  <  SRR4302540.3692219/94‑1 (MQ=60)
                                                                          AATAAAGTAGCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302540.793728/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302540.4239043/94‑1 (MQ=60)
                                                                          AATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACT                 <  SRR4302540.793729/94‑1 (MQ=60)
                                                                           ATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTG                <  SRR4302540.6227729/94‑1 (MQ=60)
                                                                            TAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGC               >  SRR4302540.3922828/1‑94 (MQ=60)
                                                                             AAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCC              >  SRR4302540.4265891/1‑94 (MQ=60)
                                                                              aatgAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCA             <  SRR4302540.2629337/90‑1 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302540.9288639/94‑1 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            >  SRR4302540.2695621/1‑94 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302540.8921325/94‑1 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302540.2518253/94‑1 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            >  SRR4302540.1805137/1‑94 (MQ=60)
                                                                               AGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAG            <  SRR4302540.4443398/94‑1 (MQ=60)
                                                                                GTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGC           <  SRR4302540.5200299/94‑1 (MQ=60)
                                                                                 TACCCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          <  SRR4302540.4887162/94‑1 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          >  SRR4302540.3679421/1‑94 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          >  SRR4302540.7892386/1‑94 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          <  SRR4302540.7371421/94‑1 (MQ=60)
                                                                                 TAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCA          >  SRR4302540.9193984/1‑94 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         <  SRR4302540.5617061/94‑1 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         <  SRR4302540.1235930/94‑1 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAT         <  SRR4302540.6996532/94‑1 (MQ=60)
                                                                                  AACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCAA         >  SRR4302540.3536108/1‑94 (MQ=60)
                                                                                     CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA      >  SRR4302540.3552882/1‑94 (MQ=60)
                                                                                     CAAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAA      <  SRR4302540.6195124/94‑1 (MQ=60)
                                                                                      AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCAGGGCAGAGACTGCCAGCATAAAA     >  SRR4302540.7423918/1‑94 (MQ=60)
                                                                                      AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA     <  SRR4302540.3912973/94‑1 (MQ=60)
                                                                                      AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA     >  SRR4302540.6742017/1‑94 (MQ=60)
                                                                                      AAGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAA     >  SRR4302540.8994339/1‑94 (MQ=60)
                                                                                       AGGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAA    >  SRR4302540.7779888/1‑94 (MQ=60)
                                                                                        GGCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAAT   <  SRR4302540.9457324/94‑1 (MQ=60)
                                                                                         GCTCGCTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  SRR4302540.2331047/1‑94 (MQ=60)
                                                                                             |                                                                                         
ACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCACCGCCCAGATAAACAGTAGCCAGTTGCCACCAATCAGCACGGCAGAGACTGCCAGCATAAAAATT  >  NC_000913/4001393‑4001575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑