Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,052,844 T→C I5M (ATA→ATG)  glnG ← GlnG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,052,8440TC97.2% 1218.9 / 13.2 398I5M (ATA→ATG) glnGGlnG
Reads supporting (aligned to +/- strand):  ref base T (1/10);  new base C (203/184);  total (204/194)
Fisher's exact test for biased strand distribution p-value = 4.76e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01

Only 100 of 408 total aligned reads displayed.

GTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTT  >  NC_000913/4052754‑4052934
                                                                                          |                                                                                          
cttCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCCCCCAACGGATGGAACTATCGTCATCGACTACCCAGACCAt                                                                                          <  2:8550008/92‑1 (MQ=255)
 ttCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATc                                                                                         >  2:9435894/1‑93 (MQ=255)
 ttCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATc                                                                                         >  1:6041990/1‑93 (MQ=255)
 ttCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATc                                                                                         >  2:5243676/1‑93 (MQ=255)
 ttCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATc                                                                                         >  1:8257785/1‑93 (MQ=255)
   ctcAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCTACTATCCAGCCCATccc                                                                                       >  2:8702052/1‑93 (MQ=255)
     cAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTc                                                                                     <  2:4271491/93‑1 (MQ=255)
      aaaCGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCg                                                                                    <  1:1827566/93‑1 (MQ=255)
       aaCGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGt                                                                                   <  1:5323321/93‑1 (MQ=255)
       aaCGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGt                                                                                   >  1:1695826/1‑93 (MQ=255)
          gtcgtACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGc                                                                                <  1:7734487/93‑1 (MQ=255)
           tcgtACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCa                                                                               >  2:9868614/1‑93 (MQ=255)
              tACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATaa                                                                            >  2:4726667/1‑93 (MQ=255)
              tACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATaa                                                                            >  1:2665777/1‑93 (MQ=255)
              tACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATaa                                                                            >  2:4909030/1‑93 (MQ=255)
               aCAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATaga                                                                           >  1:1918978/1‑91 (MQ=255)
               aCAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATaaa                                                                           <  2:7869786/93‑1 (MQ=255)
               aCAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATaaa                                                                           <  1:3509766/93‑1 (MQ=255)
                cAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAAc                                                                          >  1:6861788/1‑93 (MQ=255)
                cAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAAc                                                                          <  1:1054251/93‑1 (MQ=255)
                 aGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACCGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACg                                                                         >  2:39862/1‑93 (MQ=255)
                    ttAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTcc                                                                      >  1:7490869/1‑92 (MQ=255)
                     tAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCAc                                                                     >  1:3412641/1‑93 (MQ=255)
                      aaaCCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTCCCCAGACCATCCCTCGTTGCATAAACGTCAcc                                                                    <  2:2700912/93‑1 (MQ=255)
                       aaCCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCt                                                                   <  1:9689355/93‑1 (MQ=255)
                        aCCTGCCCCAGCGAGTGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCtt                                                                  <  2:1996138/93‑1 (MQ=255)
                        aCCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCtt                                                                  <  1:4481778/93‑1 (MQ=255)
                        aCCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCtt                                                                  >  1:3943307/1‑93 (MQ=255)
                             ccccAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTAttt                                                             >  2:6449915/1‑93 (MQ=255)
                              cccAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACTTTTATTTc                                                            >  2:8129543/1‑93 (MQ=255)
                                cAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGCCCATCCCTCGTTGCATAAACGTCACCTTTATTTCCt                                                          <  1:1261213/93‑1 (MQ=255)
                                cAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCt                                                          >  1:843758/1‑93 (MQ=255)
                                 agcgagcgCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTg                                                         >  1:5687840/1‑93 (MQ=255)
                                  gcgagcgCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGa                                                        <  1:2216557/93‑1 (MQ=255)
                                  gcgagcgCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGa                                                        >  1:6391643/1‑93 (MQ=255)
                                  gcgagcgCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGa                                                        <  1:1316541/93‑1 (MQ=255)
                                   cgagcgCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAt                                                       <  2:6006921/93‑1 (MQ=255)
                                     agcgCACGTTCAAGCACCCAACGGATGGAACTATCGTCCTCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAg                                                     >  2:10016796/1‑93 (MQ=255)
                                      gcgcACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAgg                                                    >  1:8612020/1‑93 (MQ=255)
                                       cgcACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGc                                                   <  1:3444900/93‑1 (MQ=255)
                                           cGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGt                                               >  1:7220997/1‑93 (MQ=255)
                                           cGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGt                                               >  2:1635261/1‑93 (MQ=255)
                                            cttCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTa                                              <  1:5458134/92‑1 (MQ=255)
                                             ttCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTaa                                             >  1:2985083/1‑93 (MQ=255)
                                             ttCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTaa                                             <  2:3247770/93‑1 (MQ=255)
                                               cAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAAc                                           >  2:843763/1‑93 (MQ=255)
                                                   cACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCgcg                                       >  1:1998872/1‑91 (MQ=255)
                                                   cACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCgag                                       >  2:3490805/1‑93 (MQ=255)
                                                    ccccAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCgaga                                      <  1:8349707/92‑1 (MQ=255)
                                                     cccAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAAACGAGaa                                     >  2:2832578/1‑93 (MQ=255)
                                                       cAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGCACt                                   >  1:4935860/1‑93 (MQ=255)
                                                       cAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACt                                   >  2:4151657/1‑93 (MQ=255)
                                                       cAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTACTGATAGGCAGGTAAAATGAGAACt                                   >  1:6919721/1‑93 (MQ=255)
                                                        aaCGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTc                                  <  2:6626029/93‑1 (MQ=255)
                                                        aaCGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTc                                  >  1:7856538/1‑93 (MQ=255)
                                                          cGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCgg                                <  2:3392782/93‑1 (MQ=255)
                                                           ggATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGGACTCGGt                               >  1:7271325/1‑93 (MQ=255)
                                                           ggATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGt                               >  1:3684158/1‑93 (MQ=255)
                                                           ggATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGt                               >  1:6272355/1‑93 (MQ=255)
                                                            gATGTAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTa                              <  2:3751760/93‑1 (MQ=255)
                                                            gATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTa                              <  2:7325760/93‑1 (MQ=255)
                                                            gATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTa                              <  2:4801936/93‑1 (MQ=255)
                                                            gATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTa                              <  2:2573305/93‑1 (MQ=255)
                                                            gATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTa                              <  1:10013796/93‑1 (MQ=255)
                                                            gATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTa                              <  1:5774375/93‑1 (MQ=255)
                                                               ggAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGc                           >  1:5234319/1‑93 (MQ=255)
                                                                gAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGcc                          >  1:9769928/1‑93 (MQ=255)
                                                                 aaCTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGccc                         >  2:2424209/1‑93 (MQ=255)
                                                                  aCTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCt                        >  1:5469903/1‑93 (MQ=255)
                                                                  aCTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCt                        <  1:3279875/93‑1 (MQ=255)
                                                                   cTATCGTCATCGACTACCCAGCCCATTCCTCCTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCCAGAACGCGGTATGcccag                       >  2:8248528/1‑91 (MQ=255)
                                                                   cTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTg                       <  1:8868890/93‑1 (MQ=255)
                                                                    tATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTgg                      >  1:8113927/1‑93 (MQ=255)
                                                                    tATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTgg                      >  2:7560739/1‑93 (MQ=255)
                                                                     aTCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGc                     >  1:9036215/1‑93 (MQ=255)
                                                                      tCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGcc                    >  1:4665408/1‑93 (MQ=255)
                                                                        gTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCaa                  >  2:8913048/1‑93 (MQ=255)
                                                                        gTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCaa                  >  2:9112308/1‑93 (MQ=255)
                                                                        gTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCaa                  >  1:2367315/1‑93 (MQ=255)
                                                                         tCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAc                 >  2:1290453/1‑93 (MQ=255)
                                                                         tCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAc                 <  2:2354771/93‑1 (MQ=255)
                                                                         tCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAc                 >  2:295777/1‑93 (MQ=255)
                                                                          taTCCACTACCCAGACTATCCCTCGTTGCATAAACGTCCCCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACt                <  1:9200512/92‑1 (MQ=255)
                                                                          cATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACt                <  1:2463536/93‑1 (MQ=255)
                                                                           aTCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTg               >  1:4063030/1‑93 (MQ=255)
                                                                            tCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTgg              >  1:990239/1‑93 (MQ=255)
                                                                             cGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGt             <  2:6769581/93‑1 (MQ=255)
                                                                              gACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTa            <  2:3950329/93‑1 (MQ=255)
                                                                               aCTACCCAGCCCATCCCTCGTTGAATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTaa           <  2:5604614/93‑1 (MQ=255)
                                                                               aCTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTaa           >  2:7159520/1‑93 (MQ=255)
                                                                               aCTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTaa           <  1:9364495/93‑1 (MQ=255)
                                                                               aCTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTaa           >  2:4561460/1‑93 (MQ=255)
                                                                                 tACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAAt         <  2:361428/93‑1 (MQ=255)
                                                                                   cccAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTc       <  2:7821159/93‑1 (MQ=255)
                                                                                   cccAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTc       >  1:5998544/1‑93 (MQ=255)
                                                                                     cAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCaa     <  1:3854863/93‑1 (MQ=255)
                                                                                     cAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCaa     >  1:4177598/1‑93 (MQ=255)
                                                                                      aGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGACATCGGTATGCCCTGGCCAACTGGTAAATTCAAt    >  2:5023283/1‑93 (MQ=255)
                                                                                       gACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAAtt   >  2:6250781/1‑93 (MQ=255)
                                                                                       gACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAAtt   <  2:9733678/93‑1 (MQ=255)
                                                                                          |                                                                                          
GTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTT  >  NC_000913/4052754‑4052934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 235 total aligned reads displayed.
GCCGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTTTGC  >  NC_000913/4052751‑4052937
                                                                                             |                                                                                             
GCCGTTCTCAAACGTCGTACAGGTTAAGCCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACC                                                                                               <  SRR4302540.926016/94‑1 (MQ=60)
GCCGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACC                                                                                               <  SRR4302540.5243464/94‑1 (MQ=60)
GCCGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACC                                                                                               >  SRR4302540.1707751/1‑94 (MQ=60)
 CCGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCA                                                                                              <  SRR4302540.4813580/94‑1 (MQ=60)
  CGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCAT                                                                                             <  SRR4302540.6218647/94‑1 (MQ=60)
  CGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCAT                                                                                             <  SRR4302540.6218648/94‑1 (MQ=60)
  CGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCAT                                                                                             <  SRR4302540.4015994/94‑1 (MQ=60)
  CGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCAT                                                                                             <  SRR4302540.1435338/94‑1 (MQ=60)
   GTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATC                                                                                            >  SRR4302540.2714790/1‑94 (MQ=60)
   GTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATC                                                                                            >  SRR4302540.1978698/1‑94 (MQ=60)
    TTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCC                                                                                           <  SRR4302540.1270160/94‑1 (MQ=60)
     TCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCC                                                                                          >  SRR4302540.9175547/1‑94 (MQ=60)
     TCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCC                                                                                          >  SRR4302540.7316113/1‑94 (MQ=60)
     TCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCC                                                                                          <  SRR4302540.2282575/94‑1 (MQ=60)
      cctAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCT                                                                                         <  SRR4302540.6454173/91‑1 (MQ=60)
      CTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCT                                                                                         >  SRR4302540.398916/1‑94 (MQ=60)
         AAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGT                                                                                      <  SRR4302540.1847554/94‑1 (MQ=60)
         AAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGT                                                                                      >  SRR4302540.1126652/1‑94 (MQ=60)
         AAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGT                                                                                      >  SRR4302540.1714201/1‑94 (MQ=60)
          AACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTT                                                                                     >  SRR4302540.9014723/1‑94 (MQ=60)
          AACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTT                                                                                     <  SRR4302540.5816620/94‑1 (MQ=60)
          AACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTT                                                                                     <  SRR4302540.1099221/94‑1 (MQ=60)
          AACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTT                                                                                     <  SRR4302540.5381621/94‑1 (MQ=60)
           ACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTG                                                                                    <  SRR4302540.1292896/94‑1 (MQ=60)
           ACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTG                                                                                    <  SRR4302540.3644735/94‑1 (MQ=60)
            CGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCACCGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGC                                                                                   >  SRR4302540.8397474/1‑94 (MQ=60)
            CGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGC                                                                                   <  SRR4302540.627924/94‑1 (MQ=60)
            CGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGC                                                                                   >  SRR4302540.1020159/1‑94 (MQ=60)
             GTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGCCCATCCCTCGTTGCA                                                                                  >  SRR4302540.3110856/1‑94 (MQ=60)
             GTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCA                                                                                  <  SRR4302540.7824784/94‑1 (MQ=60)
               CGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATA                                                                                <  SRR4302540.1322783/94‑1 (MQ=60)
                 TACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAA                                                                              <  SRR4302540.4036045/94‑1 (MQ=60)
                  ACAGGTTAAACCTGCCGCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAAC                                                                             <  SRR4302540.5529473/94‑1 (MQ=60)
                  ACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAAC                                                                             <  SRR4302540.3547993/94‑1 (MQ=60)
                   CAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACG                                                                            <  SRR4302540.4166740/94‑1 (MQ=60)
                   CAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACG                                                                            <  SRR4302540.4396635/94‑1 (MQ=60)
                   CAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACG                                                                            <  SRR4302540.1064983/94‑1 (MQ=60)
                    AGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGT                                                                           >  SRR4302540.8585839/1‑94 (MQ=60)
                      GTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCC                                                                         >  SRR4302540.7574501/1‑94 (MQ=60)
                      GTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCC                                                                         >  SRR4302540.5465955/1‑94 (MQ=60)
                       TTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCAC                                                                        <  SRR4302540.8571745/94‑1 (MQ=60)
                        TAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACC                                                                       <  SRR4302540.10004395/94‑1 (MQ=60)
                         AAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCT                                                                      <  SRR4302540.5927454/94‑1 (MQ=60)
                         AAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCT                                                                      <  SRR4302540.3469202/94‑1 (MQ=60)
                         AAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCT                                                                      <  SRR4302540.5215758/94‑1 (MQ=60)
                         AAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCT                                                                      <  SRR4302540.1961019/94‑1 (MQ=60)
                          AACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTT                                                                     <  SRR4302540.9106606/94‑1 (MQ=60)
                          AACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTT                                                                     <  SRR4302540.9803326/94‑1 (MQ=60)
                          AACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTT                                                                     <  SRR4302540.4047495/94‑1 (MQ=60)
                           ACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTT                                                                    <  SRR4302540.5315655/94‑1 (MQ=60)
                           ACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTT                                                                    <  SRR4302540.8896595/94‑1 (MQ=60)
                           ACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTT                                                                    <  SRR4302540.4530381/94‑1 (MQ=60)
                            CCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTA                                                                   <  SRR4302540.5396420/94‑1 (MQ=60)
                             CTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTAT                                                                  <  SRR4302540.3493120/94‑1 (MQ=60)
                             CTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTAT                                                                  >  SRR4302540.3141712/1‑94 (MQ=60)
                             CTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTAT                                                                  <  SRR4302540.4704929/94‑1 (MQ=60)
                               GCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTT                                                                <  SRR4302540.3445587/94‑1 (MQ=60)
                               GCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTT                                                                <  SRR4302540.4138170/94‑1 (MQ=60)
                                CCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTC                                                               <  SRR4302540.3277843/94‑1 (MQ=60)
                                 CCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCC                                                              >  SRR4302540.1442415/1‑94 (MQ=60)
                                 CCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCC                                                              >  SRR4302540.7340775/1‑94 (MQ=60)
                                  CCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCT                                                             <  SRR4302540.75321/94‑1 (MQ=60)
                                  CCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCT                                                             <  SRR4302540.8277024/94‑1 (MQ=60)
                                  CCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCT                                                             >  SRR4302540.852704/1‑94 (MQ=60)
                                   CAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATCAACGTCATCTCTATTTCCTG                                                            >  SRR4302540.6090427/1‑94 (MQ=60)
                                   CAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTG                                                            <  SRR4302540.1274153/94‑1 (MQ=60)
                                   CAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTG                                                            <  SRR4302540.9175745/94‑1 (MQ=60)
                                    AGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGA                                                           >  SRR4302540.9351377/1‑94 (MQ=60)
                                    AGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGA                                                           >  SRR4302540.6462794/1‑94 (MQ=60)
                                     GCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAT                                                          <  SRR4302540.2240474/94‑1 (MQ=60)
                                     GCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAT                                                          >  SRR4302540.1039376/1‑94 (MQ=60)
                                     GCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAT                                                          <  SRR4302540.6084800/94‑1 (MQ=60)
                                     GCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAT                                                          <  SRR4302540.5317186/94‑1 (MQ=60)
                                     GCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAT                                                          <  SRR4302540.1330238/94‑1 (MQ=60)
                                     GCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGAT                                                          <  SRR4302540.9715633/94‑1 (MQ=60)
                                      CGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATA                                                         <  SRR4302540.497326/94‑1 (MQ=60)
                                      CGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATA                                                         <  SRR4302540.3674472/94‑1 (MQ=60)
                                       GAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAG                                                        <  SRR4302540.9869177/94‑1 (MQ=60)
                                       GAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAG                                                        >  SRR4302540.872337/1‑94 (MQ=60)
                                        AGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGG                                                       >  SRR4302540.8712089/1‑94 (MQ=60)
                                         GCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGC                                                      <  SRR4302540.4944264/94‑1 (MQ=60)
                                         GCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGC                                                      <  SRR4302540.7722703/94‑1 (MQ=60)
                                         GCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGC                                                      <  SRR4302540.2430851/94‑1 (MQ=60)
                                          CGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCA                                                     <  SRR4302540.1709747/94‑1 (MQ=60)
                                          CGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCA                                                     <  SRR4302540.3482364/94‑1 (MQ=60)
                                           GCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAG                                                    <  SRR4302540.5641925/94‑1 (MQ=60)
                                           GCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAG                                                    >  SRR4302540.3882754/1‑94 (MQ=60)
                                           GCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAG                                                    >  SRR4302540.10108695/1‑94 (MQ=60)
                                            CACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGCTAGGCAGG                                                   >  SRR4302540.10062623/1‑94 (MQ=60)
                                             CCGTTCAAGCACCCAACGGATTGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGT                                                  <  SRR4302540.1846714/94‑1 (MQ=60)
                                             ACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGT                                                  >  SRR4302540.7301486/1‑94 (MQ=60)
                                              CGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTA                                                 >  SRR4302540.9363673/1‑94 (MQ=60)
                                               GTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAA                                                >  SRR4302540.3018018/1‑94 (MQ=60)
                                               GTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAA                                                >  SRR4302540.2415165/1‑94 (MQ=60)
                                               GTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAA                                                >  SRR4302540.3813822/1‑94 (MQ=60)
                                               CTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAA                                                <  SRR4302540.5518206/94‑1 (MQ=60)
                                                TTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAA                                               <  SRR4302540.2521438/94‑1 (MQ=60)
                                                 TCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAAC                                              <  SRR4302540.1887508/94‑1 (MQ=60)
                                                 TCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAAC                                              >  SRR4302540.2855000/1‑94 (MQ=60)
                                                     GCACCCAACGGATGGAACTATCGTCATCGACTACCCAGGCCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAG                                          <  SRR4302540.3437126/94‑1 (MQ=60)
                                                     GCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGCG                                          >  SRR4302540.2020521/1‑94 (MQ=60)
                                                      CACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGA                                         <  SRR4302540.5478132/94‑1 (MQ=60)
                                                      CACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGA                                         >  SRR4302540.2667948/1‑94 (MQ=60)
                                                       CCCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAA                                        <  SRR4302540.8446617/94‑1 (MQ=60)
                                                       CCCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAA                                        <  SRR4302540.8446616/94‑1 (MQ=60)
                                                       ACCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAA                                        >  SRR4302540.2490636/1‑94 (MQ=60)
                                                       ACCCAACGGATGAAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAA                                        >  SRR4302540.2244482/1‑94 (MQ=60)
                                                        CCCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAAC                                       <  SRR4302540.7733446/94‑1 (MQ=60)
                                                         CCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGCACT                                      >  SRR4302540.4989103/1‑94 (MQ=60)
                                                         CCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACT                                      <  SRR4302540.10073554/94‑1 (MQ=60)
                                                         CCAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTACTGATAGGCAGGTAAAATGAGAACT                                      >  SRR4302540.6996718/1‑94 (MQ=60)
                                                          CAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTC                                     >  SRR4302540.3450559/1‑94 (MQ=60)
                                                          CAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTC                                     <  SRR4302540.5801209/94‑1 (MQ=60)
                                                          CAACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTC                                     >  SRR4302540.7948338/1‑94 (MQ=60)
                                                           AACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCG                                    >  SRR4302540.6231490/1‑94 (MQ=60)
                                                           AACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCG                                    <  SRR4302540.2994112/94‑1 (MQ=60)
                                                            ACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGG                                   <  SRR4302540.3543896/94‑1 (MQ=60)
                                                            ACGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGG                                   <  SRR4302540.8979001/94‑1 (MQ=60)
                                                             CGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGT                                  >  SRR4302540.6342141/1‑94 (MQ=60)
                                                             CGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGT                                  >  SRR4302540.470618/1‑94 (MQ=60)
                                                             CGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGT                                  >  SRR4302540.7352464/1‑94 (MQ=60)
                                                             CGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGT                                  >  SRR4302540.3724420/1‑94 (MQ=60)
                                                             CGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGT                                  >  SRR4302540.3656363/1‑94 (MQ=60)
                                                             CGGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGT                                  >  SRR4302540.21211/1‑94 (MQ=60)
                                                              GGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTA                                 >  SRR4302540.699071/1‑94 (MQ=60)
                                                              GGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTA                                 >  SRR4302540.7951892/1‑94 (MQ=60)
                                                              GGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTA                                 <  SRR4302540.6943265/94‑1 (MQ=60)
                                                              GGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTA                                 <  SRR4302540.1734063/94‑1 (MQ=60)
                                                              GGATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTA                                 >  SRR4302540.5724967/1‑94 (MQ=60)
                                                              GGATGGAACTATCGACATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTA                                 <  SRR4302540.6595575/94‑1 (MQ=60)
                                                               GATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTAT                                <  SRR4302540.8440240/94‑1 (MQ=60)
                                                               GATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTAT                                <  SRR4302540.7357482/94‑1 (MQ=60)
                                                               GATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTAT                                <  SRR4302540.10130378/94‑1 (MQ=60)
                                                               GATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTAT                                <  SRR4302540.2306167/94‑1 (MQ=60)
                                                               GATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTAT                                <  SRR4302540.5838158/94‑1 (MQ=60)
                                                               GATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTAT                                >  SRR4302540.7321414/1‑94 (MQ=60)
                                                                ATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATG                               <  SRR4302540.3469626/94‑1 (MQ=60)
                                                                ATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATG                               >  SRR4302540.7906168/1‑94 (MQ=60)
                                                                ATGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATG                               <  SRR4302540.9625770/94‑1 (MQ=60)
                                                                 TGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGC                              >  SRR4302540.7212947/1‑94 (MQ=60)
                                                                 TGGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGC                              >  SRR4302540.5291419/1‑94 (MQ=60)
                                                                  GGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCC                             >  SRR4302540.9884481/1‑94 (MQ=60)
                                                                  GGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCC                             >  SRR4302540.9328394/1‑94 (MQ=60)
                                                                  GGAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCC                             >  SRR4302540.3962718/1‑94 (MQ=60)
                                                                   GAACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCC                            >  SRR4302540.7428521/1‑94 (MQ=60)
                                                                    AATTATCGTCATCGACTACCCAGACCAACCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCT                           <  SRR4302540.5259301/94‑1 (MQ=60)
                                                                    AACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCT                           <  SRR4302540.9866665/94‑1 (MQ=60)
                                                                    AACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCT                           >  SRR4302540.5530115/1‑94 (MQ=60)
                                                                    AACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGACCT                           >  SRR4302540.1623586/1‑94 (MQ=60)
                                                                     ACTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTG                          <  SRR4302540.3315700/94‑1 (MQ=60)
                                                                      CTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGG                         <  SRR4302540.8971523/94‑1 (MQ=60)
                                                                      CTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGG                         >  SRR4302540.7905844/1‑94 (MQ=60)
                                                                      CTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGG                         <  SRR4302540.7909931/94‑1 (MQ=60)
                                                                      CTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGG                         <  SRR4302540.598773/94‑1 (MQ=60)
                                                                      CTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGG                         >  SRR4302540.1920068/1‑94 (MQ=60)
                                                                      CTATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGG                         >  SRR4302540.8208103/1‑94 (MQ=60)
                                                                       TATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGC                        <  SRR4302540.2071020/94‑1 (MQ=60)
                                                                        ATCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCC                       >  SRR4302540.4715350/1‑94 (MQ=60)
                                                                         TCGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCA                      <  SRR4302540.4382594/94‑1 (MQ=60)
                                                                          CGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAA                     >  SRR4302540.2392812/1‑94 (MQ=60)
                                                                          CGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAA                     >  SRR4302540.8484941/1‑94 (MQ=60)
                                                                          CGTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAA                     >  SRR4302540.8484940/1‑94 (MQ=60)
                                                                           GTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAC                    <  SRR4302540.3390341/94‑1 (MQ=60)
                                                                           GTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAC                    <  SRR4302540.3950806/94‑1 (MQ=60)
                                                                           GTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAC                    >  SRR4302540.5791722/1‑94 (MQ=60)
                                                                           GTCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAAC                    >  SRR4302540.6500608/1‑94 (MQ=60)
                                                                            TCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACT                   <  SRR4302540.7049639/94‑1 (MQ=60)
                                                                            TCATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACT                   >  SRR4302540.5742585/1‑94 (MQ=60)
                                                                             tatccACTACCCAGACTATCCCTCGTTGCATAAACGTCCCCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTG                  <  SRR4302540.9310895/89‑1 (MQ=60)
                                                                             CATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTG                  <  SRR4302540.9913926/94‑1 (MQ=60)
                                                                             CATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTG                  <  SRR4302540.2490050/94‑1 (MQ=60)
                                                                             CATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTG                  >  SRR4302540.5519368/1‑94 (MQ=60)
                                                                             CATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTG                  <  SRR4302540.8001594/94‑1 (MQ=60)
                                                                             CATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTG                  >  SRR4302540.4106841/1‑94 (MQ=60)
                                                                              ATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGG                 >  SRR4302540.9602451/1‑94 (MQ=60)
                                                                              ATCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGG                 >  SRR4302540.1000346/1‑94 (MQ=60)
                                                                               TCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGT                <  SRR4302540.3908615/94‑1 (MQ=60)
                                                                               TCGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGT                <  SRR4302540.648060/94‑1 (MQ=60)
                                                                                CGACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTA               <  SRR4302540.6095876/94‑1 (MQ=60)
                                                                                  ACTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAA             <  SRR4302540.9476004/94‑1 (MQ=60)
                                                                                   CTACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAAT            >  SRR4302540.1964322/1‑94 (MQ=60)
                                                                                    TACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATT           >  SRR4302540.4659488/1‑94 (MQ=60)
                                                                                     ACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTC          <  SRR4302540.6217758/94‑1 (MQ=60)
                                                                                     ACCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTC          >  SRR4302540.6065019/1‑94 (MQ=60)
                                                                                      CCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCA         <  SRR4302540.8297013/94‑1 (MQ=60)
                                                                                      CCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCA         <  SRR4302540.8297012/94‑1 (MQ=60)
                                                                                      CCCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCA         >  SRR4302540.4324168/1‑94 (MQ=60)
                                                                                       CCAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAA        >  SRR4302540.4222950/1‑94 (MQ=60)
                                                                                        CAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAAT       >  SRR4302540.1870829/1‑94 (MQ=60)
                                                                                        CAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAAT       <  SRR4302540.3896776/94‑1 (MQ=60)
                                                                                        CAGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAAT       <  SRR4302540.5099308/94‑1 (MQ=60)
                                                                                        CACACCATCCCTCGTTGCATAAACGTCAGCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAAT       <  SRR4302540.5582979/94‑1 (MQ=60)
                                                                                         AGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATT      <  SRR4302540.6985203/94‑1 (MQ=60)
                                                                                         AGACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATT      >  SRR4302540.9199157/1‑94 (MQ=60)
                                                                                          GACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTT     <  SRR4302540.8705406/94‑1 (MQ=60)
                                                                                          GACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTT     <  SRR4302540.6458816/94‑1 (MQ=60)
                                                                                           ACCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTTT    >  SRR4302540.5015341/1‑94 (MQ=60)
                                                                                            CCATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTTTG   <  SRR4302540.589109/94‑1 (MQ=60)
                                                                                             CATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTTTGC  >  SRR4302540.1682652/1‑94 (MQ=60)
                                                                                             CATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTTTGC  <  SRR4302540.3345856/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCCGTTCTCAAACGTCGTACAGGTTAAACCTGCCCCAGCGAGCGCACGTTCAAGCACCCAACGGATGGAACTATCGTCATCGACTACCCAGACTATCCCTCGTTGCATAAACGTCACCTTTATTTCCTGATAGGCAGGTAAACCGAGAACTCGGTATGCCCTGGCCAACTGGTAAATTCAATTTTGC  >  NC_000913/4052751‑4052937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑