Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,091,572 |
3461 bp→GCATGCGGATCCTCTAGAGTCGACATATG |
|
[rhaD]–rhaB |
[rhaD], rhaA, rhaB |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4091572 |
4095032 |
3461 |
501 [0] |
[0] 598 |
[rhaD]–rhaB |
[rhaD],rhaA,rhaB |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4091571 | 0 (0.000) | 357 (1.350)
+GCATGCGGATCCTCTAGAGTCGACATATG |
102/126 |
0.2 |
100% |
coding (283/825 nt) |
rhaD |
rhamnulose‑phosphate aldolase |
| ? | NC_000913 |
4095033 = |
0 (0.000) | intergenic (‑4/‑284) |
rhaB/rhaS |
rhamnulokinase/RhaS |
GATK/CNVnator alignment
N/A
