Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,097,623	T→C	M162V (ATG→GTG)	rhaT ←	RhaT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,097,623	0	T	C	99.7%	1262.1 / ‑6.1	391	M162V (ATG→GTG)	rhaT	RhaT
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (222/168); total (223/168)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 400 total aligned reads displayed.

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

tCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCt                                                                                         <  2:5951675/93‑1 (MQ=255)

 cGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCtt                                                                                        >  1:2798261/1‑93 (MQ=255)

 cGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCtt                                                                                        >  2:2451659/1‑93 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       <  1:9143297/93‑1 (MQ=255)

    aaaGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgcg                                                                                     >  2:343060/1‑93 (MQ=255)

    aaaGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgcg                                                                                     >  1:5411364/1‑93 (MQ=255)

    aaaGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgcg                                                                                     >  1:52300/1‑93 (MQ=255)

     aaGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgcgc                                                                                    >  1:7874541/1‑93 (MQ=255)

      aGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGct                                                                                   >  2:4537630/1‑93 (MQ=255)

      aGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGct                                                                                   <  2:8591863/93‑1 (MQ=255)

       ggACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctc                                                                                  <  2:5367103/93‑1 (MQ=255)

        gccATCCCGGCAGAGAAAATGCCGCACCTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctct                                                                                 <  1:2540054/91‑1 (MQ=255)

        gACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctct                                                                                 <  2:7981524/93‑1 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                <  1:7588004/93‑1 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                >  2:4824645/1‑93 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              <  1:8192303/93‑1 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              >  1:9449746/1‑93 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              <  2:950234/93‑1 (MQ=255)

              ccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAc                                                                           <  1:6487861/93‑1 (MQ=255)

               cGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACt                                                                          >  1:8893101/1‑93 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      >  2:8337187/1‑93 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      <  2:705101/93‑1 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     <  1:8013222/93‑1 (MQ=255)

                     agaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCgg                                                                    <  2:7353162/93‑1 (MQ=255)

                     agaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCgg                                                                    >  1:66200/1‑93 (MQ=255)

                     agaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCgg                                                                    <  2:9172003/93‑1 (MQ=255)

                       aaaaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGgcg                                                                  <  1:1919233/93‑1 (MQ=255)

                          aTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGa                                                               <  2:9430900/93‑1 (MQ=255)

                          aTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGa                                                               <  2:7616573/93‑1 (MQ=255)

                          aTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGa                                                               >  1:2289990/1‑93 (MQ=255)

                            gCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGt                                                             >  2:390896/1‑93 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  2:9037245/1‑93 (MQ=255)

                                cacaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACa                                                         >  2:373099/1‑93 (MQ=255)

                                cacaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACa                                                         >  2:6896250/1‑93 (MQ=255)

                                 acaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACac                                                        >  1:8653285/1‑92 (MQ=255)

                                   aTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATc                                                      >  2:3073573/1‑93 (MQ=255)

                                    tCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATcc                                                     >  1:3606516/1‑93 (MQ=255)

                                    tCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATcc                                                     >  2:6625200/1‑93 (MQ=255)

                                      cccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCt                                                   <  2:84872/92‑1 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  >  2:1905731/1‑93 (MQ=255)

                                          ccAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGc                                               >  1:5135995/1‑93 (MQ=255)

                                          ccAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGc                                               <  1:4201791/93‑1 (MQ=255)

                                            aGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCa                                             >  1:4398004/1‑93 (MQ=255)

                                            aGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCa                                             <  1:5661434/93‑1 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  1:1875837/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  2:4697153/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  2:7481172/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  2:1679956/1‑93 (MQ=255)

                                               aCCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATc                                          <  1:8860952/93‑1 (MQ=255)

                                                ccAGCCCTTTTTTCAGATTGAGCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCACCTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         <  2:1495077/93‑1 (MQ=255)

                                                ccAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         >  2:9866771/1‑93 (MQ=255)

                                                ccAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         >  2:5730096/1‑93 (MQ=255)

                                                ccAGCCCTGTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         <  1:3136726/93‑1 (MQ=255)

                                                 cAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAg                                        >  1:7813149/1‑93 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcg                                      <  1:1339755/93‑1 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcg                                      <  2:816721/93‑1 (MQ=255)

                                                    cccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcgc                                     >  2:9693725/1‑93 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   <  2:1774026/93‑1 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   <  2:6388331/93‑1 (MQ=255)

                                                       ttttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            >  2:1133105/1‑51 (MQ=255)

                                                       ttttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccac                                  >  2:4414233/1‑93 (MQ=255)

                                                       ttttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccac                                  >  2:5551443/1‑93 (MQ=255)

                                                        tttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacc                                 <  2:1338164/93‑1 (MQ=255)

                                                        tttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacc                                 >  2:5215339/1‑93 (MQ=255)

                                                        tttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacc                                 >  1:8523157/1‑93 (MQ=255)

                                                          tttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAg                               >  1:4779618/1‑93 (MQ=255)

                                                          tttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAg                               >  1:6031435/1‑93 (MQ=255)

                                                           ttCAGATTGACCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGa                              <  1:5906488/93‑1 (MQ=255)

                                                            tCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGaa                             <  2:7779967/93‑1 (MQ=255)

                                                            tCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGaa                             <  1:6118897/93‑1 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:7191212/1‑93 (MQ=255)

                                                                aTTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGcc                         <  1:9234065/93‑1 (MQ=255)

                                                                 ttGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCg                        >  2:5427220/1‑93 (MQ=255)

                                                                 ttGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCg                        >  2:6141982/1‑93 (MQ=255)

                                                                  tGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGa                       <  2:5854173/93‑1 (MQ=255)

                                                                  tGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGa                       <  1:2879806/93‑1 (MQ=255)

                                                                   gAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAg                      <  2:2753735/93‑1 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   <  1:8432847/93‑1 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCACTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   <  1:7018498/93‑1 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  >  2:1214721/1‑93 (MQ=255)

                                                                         ttCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGt                >  2:4218927/1‑93 (MQ=255)

                                                                          tCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTc               >  1:6321409/1‑93 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  1:5626219/93‑1 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  2:2003740/93‑1 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  1:4129472/93‑1 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  1:10038769/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             >  1:9995019/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  1:4562778/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  1:3979743/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            <  1:3514877/93‑1 (MQ=255)

                                                                               tttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCg          <  2:319263/93‑1 (MQ=255)

                                                                               tttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCg          >  1:2064879/1‑93 (MQ=255)

                                                                                ttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGt         <  2:2338547/93‑1 (MQ=255)

                                                                                ttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGt         >  1:3824307/1‑93 (MQ=255)

                                                                                 tAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTc        >  1:9682067/1‑93 (MQ=255)

                                                                                  aaTGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAACCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTcc       >  1:9072167/1‑93 (MQ=255)

                                                                                   aTGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCg      >  2:6771426/1‑93 (MQ=255)

                                                                                   aTGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCg      >  1:3804624/1‑93 (MQ=255)

                                                                                    tGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGc     <  1:1170251/93‑1 (MQ=255)

                                                                                     gCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGcc    <  1:6855564/93‑1 (MQ=255)

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 212 total aligned reads displayed.

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG  >  NC_000913/4097530‑4097715

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCAC                                                                                              <  SRR4302540.9153777/94‑1 (MQ=60)

 CATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACC                                                                                             >  SRR4302540.1414008/1‑94 (MQ=60)

  ATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCT                                                                                            <  SRR4302540.9603086/94‑1 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                           <  SRR4302540.9331442/94‑1 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                           >  SRR4302540.2828476/1‑94 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                           <  SRR4302540.2813900/94‑1 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                          <  SRR4302540.7826349/94‑1 (MQ=60)

     GCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGC                                                                                         <  SRR4302540.9253134/94‑1 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                        <  SRR4302540.5655472/94‑1 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                        >  SRR4302540.5991299/1‑94 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                        >  SRR4302540.5991298/1‑94 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                        >  SRR4302540.52822/1‑94 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                        >  SRR4302540.5470860/1‑94 (MQ=60)

      CAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCG                                                                                        >  SRR4302540.52823/1‑94 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                       >  SRR4302540.8580533/1‑94 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                       >  SRR4302540.7966524/1‑94 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                       <  SRR4302540.1898060/94‑1 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                       >  SRR4302540.4523841/1‑94 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                       >  SRR4302540.4523840/1‑94 (MQ=60)

         AGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCTACCTTGCGCTC                                                                                     >  SRR4302540.6148101/1‑94 (MQ=60)

         AGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTC                                                                                     >  SRR4302540.4066474/1‑94 (MQ=60)

         AGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTC                                                                                     >  SRR4302540.9524752/1‑94 (MQ=60)

          GGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCT                                                                                    >  SRR4302540.886738/1‑94 (MQ=60)

           GCCATCCCGGCAGAGAAAATGCCGCACCTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTT                                                                                   <  SRR4302540.2567446/94‑1 (MQ=60)

            ACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTT                                                                                  <  SRR4302540.7673220/94‑1 (MQ=60)

            ACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTT                                                                                  <  SRR4302540.297516/94‑1 (MQ=60)

             CATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTC                                                                                 >  SRR4302540.9561919/1‑94 (MQ=60)

             CATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTC                                                                                 <  SRR4302540.7055315/94‑1 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                <  SRR4302540.8287495/94‑1 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                >  SRR4302540.790600/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                >  SRR4302540.5174327/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                >  SRR4302540.9203698/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                <  SRR4302540.8287494/94‑1 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                >  SRR4302540.2176176/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                >  SRR4302540.5196758/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTAA                                                                                >  SRR4302540.1917153/1‑94 (MQ=60)

               CCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAA                                                                               <  SRR4302540.1271612/94‑1 (MQ=60)

                tctcggcattcctgctgaaccgctcttccgatctagcgcttCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAC                                                                              <  SRR4302540.1144910/53‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACT                                                                             >  SRR4302540.8996047/1‑94 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                             <  SRR4302540.6560010/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                             <  SRR4302540.3555362/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                             <  SRR4302540.504805/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                             <  SRR4302540.10088301/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                             <  SRR4302540.8097203/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                             <  SRR4302540.171981/94‑1 (MQ=60)

                  CGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTG                                                                            <  SRR4302540.9262467/94‑1 (MQ=60)

                   GGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGC                                                                           >  SRR4302540.7050451/1‑94 (MQ=60)

                   GGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGC                                                                           >  SRR4302540.4203554/1‑94 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTTCCC                                                                         <  SRR4302540.7738938/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                         <  SRR4302540.9463104/94‑1 (MQ=60)

                       GAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGG                                                                       <  SRR4302540.8106427/94‑1 (MQ=60)

                       GAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGG                                                                       >  SRR4302540.66872/1‑94 (MQ=60)

                         GAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCG                                                                     >  SRR4302540.8982423/1‑94 (MQ=60)

                         GAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCG                                                                     <  SRR4302540.4811225/94‑1 (MQ=60)

                          AAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGC                                                                    >  SRR4302540.3950118/1‑94 (MQ=60)

                          AAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGC                                                                    <  SRR4302540.1940173/94‑1 (MQ=60)

                          AAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGC                                                                    >  SRR4302540.2564123/1‑94 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                   >  SRR4302540.6683989/1‑94 (MQ=60)

                            AATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGA                                                                  <  SRR4302540.3386671/94‑1 (MQ=60)

                            AATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGA                                                                  >  SRR4302540.2314625/1‑94 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCTGCGCGAG                                                                 >  SRR4302540.8572340/1‑94 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                 <  SRR4302540.4181187/94‑1 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                 <  SRR4302540.3981010/94‑1 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                 <  SRR4302540.2438922/94‑1 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                 <  SRR4302540.2049353/94‑1 (MQ=60)

                              TGCCGCACATCACCGCCAGCACCAGCCCTTTTGTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGT                                                                <  SRR4302540.4392489/94‑1 (MQ=60)

                                CCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTA                                                              >  SRR4302540.10162597/1‑94 (MQ=60)

                                   CACATCCCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAA                                                           <  SRR4302540.3015115/94‑1 (MQ=60)

                                   CACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAC                                                           >  SRR4302540.8753803/1‑94 (MQ=60)

                                   CACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAA                                                           >  SRR4302540.9072872/1‑94 (MQ=60)

                                    CCATCCCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                          <  SRR4302540.7634292/94‑1 (MQ=60)

                                    ACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                          <  SRR4302540.1951425/94‑1 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                        >  SRR4302540.6627161/1‑94 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                        >  SRR4302540.540107/1‑94 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                        >  SRR4302540.6185560/1‑94 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                        <  SRR4302540.1553858/94‑1 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                        >  SRR4302540.3645927/1‑94 (MQ=60)

                                       TCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCC                                                       >  SRR4302540.9696606/1‑94 (MQ=60)

                                        CACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCT                                                      >  SRR4302540.7948156/1‑94 (MQ=60)

                                        CACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCT                                                      >  SRR4302540.3750267/1‑94 (MQ=60)

                                         ACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTA                                                     >  SRR4302540.6385602/1‑94 (MQ=60)

                                         ACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTA                                                     >  SRR4302540.5211603/1‑94 (MQ=60)

                                          CCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTAC                                                    <  SRR4302540.1952537/94‑1 (MQ=60)

                                          CCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTAC                                                    <  SRR4302540.63670/94‑1 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGACCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                   <  SRR4302540.822807/94‑1 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                   <  SRR4302540.4621484/94‑1 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                   >  SRR4302540.78362/1‑94 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAAGGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                   <  SRR4302540.1562220/94‑1 (MQ=60)

                                           CGCCAGCACCAGCACTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCGCCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                   <  SRR4302540.2563913/94‑1 (MQ=60)

                                            GCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGC                                                  >  SRR4302540.5191626/1‑94 (MQ=60)

                                             CCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCC                                                 >  SRR4302540.5227811/1‑94 (MQ=60)

                                             CCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCC                                                 <  SRR4302540.4247512/94‑1 (MQ=60)

                                              CAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCA                                                >  SRR4302540.4445706/1‑94 (MQ=60)

                                               AGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAA                                               <  SRR4302540.5723775/94‑1 (MQ=60)

                                               AGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAA                                               <  SRR4302540.5719311/94‑1 (MQ=60)

                                               AGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAA                                               >  SRR4302540.4321591/1‑94 (MQ=60)

                                                 CACCAGCCCTTTTTTCAGATTGAGCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATC                                             <  SRR4302540.8948707/94‑1 (MQ=60)

                                                 CACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATC                                             >  SRR4302540.7322229/1‑94 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                            >  SRR4302540.8729953/1‑94 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                            <  SRR4302540.8963486/94‑1 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                            <  SRR4302540.3730996/94‑1 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                            >  SRR4302540.4585949/1‑94 (MQ=60)

                                                   CCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAG                                           >  SRR4302540.7904451/1‑94 (MQ=60)

                                                   CCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAG                                           <  SRR4302540.3876831/94‑1 (MQ=60)

                                                   CCAGCCCTGTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAG                                           <  SRR4302540.3170935/94‑1 (MQ=60)

                                                    CAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGC                                          >  SRR4302540.6818281/1‑94 (MQ=60)

                                                    CAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGC                                          >  SRR4302540.6453780/1‑94 (MQ=60)

                                                    CAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGC                                          <  SRR4302540.6399136/94‑1 (MQ=60)

                                                     cgcccgtttatcaggTTGAACTCTTCGGCTTTAATGCCCACCGTGCCCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCG                                         <  SRR4302540.5617178/79‑1 (MQ=60)

                                                     AGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCG                                         <  SRR4302540.8291346/94‑1 (MQ=60)

                                                     AGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCG                                         <  SRR4302540.3855497/94‑1 (MQ=60)

                                                      GCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGC                                        >  SRR4302540.8981505/1‑94 (MQ=60)

                                                      GCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGC                                        >  SRR4302540.8105227/1‑94 (MQ=60)

                                                      GCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGC                                        <  SRR4302540.1353784/94‑1 (MQ=60)

                                                      GCCCTATTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGC                                        <  SRR4302540.8876032/94‑1 (MQ=60)

                                                        CCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA                                      >  SRR4302540.2728846/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                     <  SRR4302540.294698/94‑1 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                     >  SRR4302540.5451923/1‑94 (MQ=60)

                                                          TTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACC                                    >  SRR4302540.8622200/1‑94 (MQ=60)

                                                          TTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACC                                    >  SRR4302540.7921715/1‑94 (MQ=60)

                                                          TTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACC                                    <  SRR4302540.6488374/94‑1 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                  >  SRR4302540.6098373/1‑94 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                  >  SRR4302540.1240206/1‑94 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                  >  SRR4302540.3847128/1‑94 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                  >  SRR4302540.4830697/1‑94 (MQ=60)

                                                              TTCAGATTGATCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAA                                <  SRR4302540.4126516/94‑1 (MQ=60)

                                                              TTCAGATTGACCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAA                                <  SRR4302540.5971740/94‑1 (MQ=60)

                                                              TTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAA                                >  SRR4302540.5873252/1‑94 (MQ=60)

                                                               TCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAAC                               <  SRR4302540.6187043/94‑1 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACG                              <  SRR4302540.6473836/94‑1 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                             >  SRR4302540.7271368/1‑94 (MQ=60)

                                                                  GATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATTCCTACGCCAATCAGCGCCACCAGAACGCC                            >  SRR4302540.9006845/1‑94 (MQ=60)

                                                                  GATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCC                            <  SRR4302540.5950423/94‑1 (MQ=60)

                                                                  GATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCC                            <  SRR4302540.2890153/94‑1 (MQ=60)

                                                                   ATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                           >  SRR4302540.3846463/1‑94 (MQ=60)

                                                                   ATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                           >  SRR4302540.973913/1‑94 (MQ=60)

                                                                   ATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                           <  SRR4302540.9344719/94‑1 (MQ=60)

                                                                    TTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGA                          >  SRR4302540.6590727/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                         <  SRR4302540.8531115/94‑1 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                         >  SRR4302540.1287206/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                         >  SRR4302540.4654603/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                         <  SRR4302540.2911133/94‑1 (MQ=60)

                                                                      GAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGC                        >  SRR4302540.3540722/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                     >  SRR4302540.7152902/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                     <  SRR4302540.8530745/94‑1 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                     >  SRR4302540.8469231/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                     >  SRR4302540.9636032/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCACTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                     <  SRR4302540.7096447/94‑1 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCACTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                     <  SRR4302540.7096446/94‑1 (MQ=60)

                                                                          TCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACG                    <  SRR4302540.1696790/94‑1 (MQ=60)

                                                                           CTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGT                   >  SRR4302540.5606382/1‑94 (MQ=60)

                                                                           CTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGT                   >  SRR4302540.9311643/1‑94 (MQ=60)

                                                                            TTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTC                  >  SRR4302540.9400078/1‑94 (MQ=60)

                                                                             TCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGTCAATCAGCGCCAACAGAACGCCGAGCAACGTCA                 >  SRR4302540.9040470/1‑94 (MQ=60)

                                                                             TCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCA                 <  SRR4302540.7170510/94‑1 (MQ=60)

                                                                             TCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATACCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCA                 >  SRR4302540.2289007/1‑94 (MQ=60)

                                                                              CGGCTTTAATTCCCACCTTGCGCTCTCTCAACTGCCCGGCGCGAGTTACAATCCCTCCGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.7548765/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTTCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.9897360/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                >  SRR4302540.10111489/1‑94 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.5688148/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.5688149/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.1920219/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.6127889/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                <  SRR4302540.10155499/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                >  SRR4302540.8123754/1‑94 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG               <  SRR4302540.8631701/94‑1 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG               >  SRR4302540.5991975/1‑94 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG               >  SRR4302540.4612065/1‑94 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG               >  SRR4302540.4240173/1‑94 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG               >  SRR4302540.4022612/1‑94 (MQ=60)

                                                                                GCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGC              <  SRR4302540.6840415/94‑1 (MQ=60)

                                                                                GCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGC              <  SRR4302540.3553168/94‑1 (MQ=60)

                                                                                 CTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCG             >  SRR4302540.1068371/1‑94 (MQ=60)

                                                                                 CTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCG             >  SRR4302540.2087099/1‑94 (MQ=60)

                                                                                  TTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGT            <  SRR4302540.8276318/94‑1 (MQ=60)

                                                                                  TTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGT            >  SRR4302540.3620463/1‑94 (MQ=60)

                                                                                  TTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGT            >  SRR4302540.3865924/1‑94 (MQ=60)

                                                                                  TTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGC            >  SRR4302540.283120/1‑94 (MQ=60)

                                                                                   TTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTC           >  SRR4302540.4424404/1‑94 (MQ=60)

                                                                                   TTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTC           >  SRR4302540.9795982/1‑94 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACACTCCCTAGGCAAACCAGCGCCATCAGAACGCCCAGCAACGGCGTGCGTCC          >  SRR4302540.9181120/1‑94 (MQ=53)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC          <  SRR4302540.4078997/94‑1 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC          >  SRR4302540.3697792/1‑94 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAACCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC          >  SRR4302540.9181119/1‑94 (MQ=60)

                                                                                     AATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCG         >  SRR4302540.3846064/1‑94 (MQ=60)

                                                                                     AATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCG         <  SRR4302540.8967798/94‑1 (MQ=60)

                                                                                       TGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCC       >  SRR4302540.3264492/1‑94 (MQ=60)

                                                                                       TGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCC       <  SRR4302540.1182369/94‑1 (MQ=60)

                                                                                        GCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCT      <  SRR4302540.6931516/94‑1 (MQ=60)

                                                                                         CCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT     >  SRR4302540.5825478/1‑94 (MQ=60)

                                                                                          CCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTC    >  SRR4302540.8339465/1‑94 (MQ=60)

                                                                                          CCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTC    <  SRR4302540.6811196/94‑1 (MQ=60)

                                                                                          CCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTC    <  SRR4302540.2247424/94‑1 (MQ=60)

                                                                                          CCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTC    <  SRR4302540.2901280/94‑1 (MQ=60)

                                                                                           CACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCG   >  SRR4302540.585794/1‑94 (MQ=60)

                                                                                           CACCTAGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGACCAACGTCATGCGTCCGCCTTCG   <  SRR4302540.1858928/94‑1 (MQ=60)

                                                                                            ACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG  >  SRR4302540.2982440/1‑94 (MQ=60)

                                                                                            ACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG  <  SRR4302540.9299586/94‑1 (MQ=60)

                                                                                            ACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG  >  SRR4302540.4454131/1‑94 (MQ=60)

                                                                                            ACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG  >  SRR4302540.9131230/1‑94 (MQ=60)

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGG  >  NC_000913/4097530‑4097715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`