Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,097,623	T→C	M162V (ATG→GTG)	rhaT ←	RhaT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,097,623	0	T	C	100.0%	793.8 / NA	245	M162V (ATG→GTG)	rhaT	RhaT
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/109); total (136/109)

Only 100 of 249 total aligned reads displayed.

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

tCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCt                                                                                         <  1:6209518/93‑1 (MQ=255)

tCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCt                                                                                         >  2:4412612/1‑93 (MQ=255)

tCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCt                                                                                         >  1:2647565/1‑93 (MQ=255)

 cGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCtt                                                                                        <  2:5575417/93‑1 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       <  1:4605333/93‑1 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       >  2:6243961/1‑93 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCACACCTTg                                                                                       >  2:4219070/1‑93 (MQ=255)

   cAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgc                                                                                      >  1:5757822/1‑93 (MQ=255)

      aGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGct                                                                                   >  2:1551601/1‑93 (MQ=255)

       ggACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctc                                                                                  <  2:4733747/93‑1 (MQ=255)

        gACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctct                                                                                 >  1:3555992/1‑93 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                >  2:1703383/1‑93 (MQ=255)

            tCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCa                                                                             >  2:3691471/1‑93 (MQ=255)

            tCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCa                                                                             >  1:1938138/1‑93 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  1:4471822/93‑1 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  1:4779337/93‑1 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  2:4894296/93‑1 (MQ=255)

              ccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAc                                                                           <  1:427470/93‑1 (MQ=255)

              ccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGACGTTAATGCCCACCTTGCGCTCTTTCAAc                                                                           >  1:1355544/1‑93 (MQ=255)

                  cAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  1:2339914/93‑1 (MQ=255)

                  cAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  1:2790441/93‑1 (MQ=255)

                  cAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  1:415535/93‑1 (MQ=255)

                  cAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  2:3458932/93‑1 (MQ=255)

                  aagagAAAATGCCGCACATCCCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  2:668540/92‑1 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      <  2:217070/93‑1 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      >  1:5942187/1‑93 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      <  2:5988922/93‑1 (MQ=255)

                      gaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTTCCCGgc                                                                   >  1:3476666/1‑93 (MQ=255)

                           tGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAg                                                              >  1:274904/1‑93 (MQ=255)

                              cGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTa                                                           >  1:1218384/1‑93 (MQ=255)

                                cacaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACa                                                         <  2:2237840/93‑1 (MQ=255)

                                 acaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        <  1:2420861/93‑1 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  2:1167555/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  1:5630300/1‑93 (MQ=255)

                                   aTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATc                                                      >  1:439257/1‑93 (MQ=255)

                                   aTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCCCGAGCTACAATc                                                      >  1:1104117/1‑93 (MQ=255)

                                    tCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATcc                                                     <  1:1737059/93‑1 (MQ=255)

                                      cccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCt                                                   <  2:518804/92‑1 (MQ=255)

                                      aCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCt                                                   >  2:3323942/1‑93 (MQ=255)

                                        cGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTAc                                                 >  2:4202230/1‑93 (MQ=255)

                                         gCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACg                                                >  1:5514499/1‑93 (MQ=255)

                                          ccAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGc                                               <  1:1056952/93‑1 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  2:781586/1‑93 (MQ=255)

                                              cACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAAt                                           >  1:2239395/1‑93 (MQ=255)

                                              cACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAAt                                           <  1:3946059/93‑1 (MQ=255)

                                                ccAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         >  2:2892592/1‑93 (MQ=255)

                                                 cAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAg                                        >  2:58760/1‑93 (MQ=255)

                                                 cAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAg                                        >  2:5597449/1‑93 (MQ=255)

                                                  aGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgc                                       >  2:3565837/1‑93 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAATTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTCCAATCCCTACGCCAATCAgcg                                      >  2:875015/1‑93 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGCGCTACAATCCCTACGCCAATCAgcc                                      >  2:3148116/1‑92 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcg                                      >  1:91560/1‑93 (MQ=255)

                                                    cccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcgc                                     <  1:2883304/93‑1 (MQ=255)

                                                     ccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcc                                    >  2:701337/1‑93 (MQ=255)

                                                     ccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcc                                    >  2:5778315/1‑93 (MQ=255)

                                                     ccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcc                                    >  2:5454688/1‑93 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   <  1:719668/93‑1 (MQ=255)

                                                       ttttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccac                                  >  1:3367587/1‑93 (MQ=255)

                                                       ttttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccac                                  >  1:5687014/1‑93 (MQ=255)

                                                       ttttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccac                                  >  1:5404437/1‑93 (MQ=255)

                                                        tttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacc                                 >  2:2486001/1‑93 (MQ=255)

                                                         ttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacca                                >  1:1023756/1‑93 (MQ=255)

                                                          tttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAg                               >  1:756610/1‑93 (MQ=255)

                                                           ttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGa                              <  2:1672216/93‑1 (MQ=255)

                                                            tCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGaa                             <  1:2981167/93‑1 (MQ=255)

                                                                 ttGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCg                        >  1:2712021/1‑93 (MQ=255)

                                                                 ttGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCg                        >  2:1296772/1‑93 (MQ=255)

                                                                  tGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGa                       <  1:953627/93‑1 (MQ=255)

                                                                  tGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGa                       <  1:2054944/93‑1 (MQ=255)

                                                                   gAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAg                      >  1:2182294/1‑93 (MQ=255)

                                                                    aaCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGc                     <  1:1453507/93‑1 (MQ=255)

                                                                    aaCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGc                     >  2:4971575/1‑93 (MQ=255)

                                                                    aaCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGc                     <  2:2371620/93‑1 (MQ=255)

                                                                    aaCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGc                     >  1:3664449/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCa                    <  1:2106042/93‑1 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   >  1:283479/1‑93 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   >  2:2354630/1‑93 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  >  1:3088912/1‑93 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  >  1:4970818/1‑93 (MQ=255)

                                                                        ctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACg                 >  2:2070985/1‑93 (MQ=255)

                                                                         ttCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGt                <  1:5148858/93‑1 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  2:4648680/93‑1 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  2:5162800/93‑1 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              >  2:1102905/1‑93 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             >  1:3796530/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  1:4110665/1‑93 (MQ=255)

                                                                              cTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCACCGTCATgg           >  2:4118455/1‑92 (MQ=255)

                                                                              cTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGc           >  1:3841897/1‑93 (MQ=255)

                                                                              cTTTAATGCCCACCGTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGc           <  2:2647565/93‑1 (MQ=255)

                                                                               tttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCg          >  1:328673/1‑93 (MQ=255)

                                                                                ttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGCACGCCGAGCAACGTCATGCGt         >  2:1207627/1‑93 (MQ=255)

                                                                                 tAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTc        <  1:157436/93‑1 (MQ=255)

                                                                                 tAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTc        <  2:451682/93‑1 (MQ=255)

                                                                                  aaTGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTcc       >  1:5921884/1‑93 (MQ=255)

                                                                                    tGCCCACCTTGCGCTCTTTCAACGGCCCGGCGCGAGTTACAAGCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGc     <  2:1989741/93‑1 (MQ=255)

                                                                                      cccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCt   <  2:5383455/93‑1 (MQ=255)

                                                                                      cccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCt   <  2:1431586/93‑1 (MQ=255)

                                                                                      cccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCt   <  1:4806701/93‑1 (MQ=255)

                                                                                      cccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCt   <  1:5765857/93‑1 (MQ=255)

                                                                                       ccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCtt  >  2:3805889/1‑93 (MQ=255)

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  >  NC_000913/4097530‑4097716

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCAC                                                                                               <  SRR4302533.675432/94‑1 (MQ=60)

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCAC                                                                                               <  SRR4302533.4019617/94‑1 (MQ=60)

 CATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACC                                                                                              <  SRR4302533.978800/94‑1 (MQ=60)

 CATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACC                                                                                              >  SRR4302533.4884351/1‑94 (MQ=60)

  ATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCT                                                                                             >  SRR4302533.2663831/1‑94 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                            <  SRR4302533.6246760/94‑1 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                            <  SRR4302533.3371211/94‑1 (MQ=60)

   TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTT                                                                                            <  SRR4302533.2911839/94‑1 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                           >  SRR4302533.5793714/1‑94 (MQ=60)

    CGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTG                                                                                           <  SRR4302533.2136069/94‑1 (MQ=60)

     GCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGC                                                                                          >  SRR4302533.4118662/1‑94 (MQ=60)

     GCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGC                                                                                          <  SRR4302533.4633232/94‑1 (MQ=60)

     GCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGC                                                                                          >  SRR4302533.5792567/1‑94 (MQ=60)

       AAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGC                                                                                        >  SRR4302533.4980141/1‑94 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       <  SRR4302533.780848/94‑1 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       <  SRR4302533.4383198/94‑1 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       <  SRR4302533.2122564/94‑1 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       <  SRR4302533.1577652/94‑1 (MQ=60)

        AAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCT                                                                                       >  SRR4302533.2885773/1‑94 (MQ=60)

          GGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCT                                                                                     >  SRR4302533.3577909/1‑94 (MQ=60)

          GGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCT                                                                                     >  SRR4302533.5446391/1‑94 (MQ=60)

          GGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCT                                                                                     <  SRR4302533.1103079/94‑1 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGTTCTTTCA                                                                                 >  SRR4302533.3240404/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                 >  SRR4302533.1949953/1‑94 (MQ=60)

              ATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCA                                                                                 <  SRR4302533.3731372/94‑1 (MQ=60)

                CCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAC                                                                               <  SRR4302533.4808287/94‑1 (MQ=60)

                CCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAC                                                                               <  SRR4302533.4498870/94‑1 (MQ=60)

                CCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGACGTTAATGCCCACCTTGCGCTCTTTCAAC                                                                               >  SRR4302533.1363691/1‑94 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                              <  SRR4302533.430020/94‑1 (MQ=60)

                 CCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACT                                                                              >  SRR4302533.2553825/1‑94 (MQ=60)

                  CGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTG                                                                             >  SRR4302533.3454318/1‑94 (MQ=60)

                    GCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCC                                                                           >  SRR4302533.1766012/1‑94 (MQ=60)

                     CAGAGAAAATGCCGCCCATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          <  SRR4302533.2349239/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          >  SRR4302533.2732458/1‑94 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          <  SRR4302533.418031/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          >  SRR4302533.5978124/1‑94 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          <  SRR4302533.2354404/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          <  SRR4302533.732777/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCC                                                                          <  SRR4302533.2807604/94‑1 (MQ=60)

                     CAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTACCC                                                                          >  SRR4302533.927815/1‑94 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         >  SRR4302533.1203226/1‑94 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         <  SRR4302533.6023631/94‑1 (MQ=60)

                      AGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCG                                                                         >  SRR4302533.3451706/1‑94 (MQ=60)

                       GAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGG                                                                        <  SRR4302533.5122300/94‑1 (MQ=60)

                        AGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTTCCCGGC                                                                       >  SRR4302533.3498120/1‑94 (MQ=60)

                        AGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGC                                                                       >  SRR4302533.4497036/1‑94 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGGACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                    >  SRR4302533.694795/1‑94 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                    <  SRR4302533.3647974/94‑1 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                    <  SRR4302533.5388912/94‑1 (MQ=60)

                           AAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCG                                                                    <  SRR4302533.1412086/94‑1 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                  <  SRR4302533.2796327/94‑1 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                  >  SRR4302533.276578/1‑94 (MQ=60)

                             ATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAG                                                                  >  SRR4302533.2684705/1‑94 (MQ=60)

                                CCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTA                                                               >  SRR4302533.1225700/1‑94 (MQ=60)

                                 CGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCACGGCGCGAGTTAC                                                              >  SRR4302533.5775991/1‑94 (MQ=60)

                                   CACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAA                                                            <  SRR4302533.1711318/94‑1 (MQ=60)

                                    ACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                           <  SRR4302533.2435811/94‑1 (MQ=60)

                                    ACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAT                                                           >  SRR4302533.5664348/1‑94 (MQ=60)

                                     CATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATC                                                          <  SRR4302533.27442/94‑1 (MQ=60)

                                     CATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATC                                                          >  SRR4302533.441874/1‑94 (MQ=60)

                                     CATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCCCGAGCTACAATC                                                          >  SRR4302533.1110656/1‑94 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                         <  SRR4302533.4153741/94‑1 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                         >  SRR4302533.2420144/1‑94 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCC                                                         >  SRR4302533.1440237/1‑94 (MQ=60)

                                      ATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGCTACAATCC                                                         >  SRR4302533.4809748/1‑94 (MQ=60)

                                       TCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCC                                                        <  SRR4302533.1747598/94‑1 (MQ=60)

                                        CACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCT                                                       >  SRR4302533.5772407/1‑94 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                    >  SRR4302533.5547791/1‑94 (MQ=60)

                                           CGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACG                                                    >  SRR4302533.5370007/1‑94 (MQ=60)

                                             CCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCC                                                  <  SRR4302533.1063167/94‑1 (MQ=60)

                                              CAGCACCAGCCATTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCA                                                 <  SRR4302533.1031070/94‑1 (MQ=60)

                                               AGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAA                                                >  SRR4302533.3675158/1‑94 (MQ=60)

                                                GCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAAT                                               >  SRR4302533.2253234/1‑94 (MQ=60)

                                                 CACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATC                                              <  SRR4302533.3970125/94‑1 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                             >  SRR4302533.2848304/1‑94 (MQ=60)

                                                  ACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCA                                             >  SRR4302533.2848303/1‑94 (MQ=60)

                                                    CAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGC                                           >  SRR4302533.5818373/1‑94 (MQ=60)

                                                    CAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGC                                           >  SRR4302533.850682/1‑94 (MQ=60)

                                                    CAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGC                                           >  SRR4302533.5961086/1‑94 (MQ=60)

                                                     AGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCG                                          >  SRR4302533.92140/1‑94 (MQ=60)

                                                       CCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCC                                        <  SRR4302533.3822513/94‑1 (MQ=60)

                                                       CCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCC                                        <  SRR4302533.2901040/94‑1 (MQ=60)

                                                       CCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCC                                        <  SRR4302533.2901039/94‑1 (MQ=60)

                                                        CCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCA                                       >  SRR4302533.59932/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      <  SRR4302533.4627575/94‑1 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302533.4753877/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      <  SRR4302533.723913/94‑1 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302533.4281757/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302533.5721365/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302533.3388386/1‑94 (MQ=60)

                                                         CTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCAC                                      >  SRR4302533.5436913/1‑94 (MQ=60)

                                                           TTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCA                                    >  SRR4302533.1029773/1‑94 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                   <  SRR4302533.22121/94‑1 (MQ=60)

                                                            TTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAG                                   >  SRR4302533.761064/1‑94 (MQ=60)

                                                             TTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGA                                  <  SRR4302533.1170647/94‑1 (MQ=60)

                                                               TCAGATTGATCTCTTCGAGTTTAATGCCCCCCTCGCGCTCTTTCAACTGCCCGGCTCGAGTTACAATCCCTACGCCAATCAGCCCCACCAGAAC                                <  SRR4302533.5547244/94‑1 (MQ=60)

                                                               TCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAAC                                <  SRR4302533.992074/94‑1 (MQ=60)

                                                               TCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAAC                                <  SRR4302533.2999402/94‑1 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACG                               <  SRR4302533.4646045/94‑1 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACG                               >  SRR4302533.5925365/1‑94 (MQ=60)

                                                                CAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACG                               <  SRR4302533.4936705/94‑1 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                              >  SRR4302533.5653036/1‑94 (MQ=60)

                                                                 AGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGC                              >  SRR4302533.2098974/1‑94 (MQ=60)

                                                                  GATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCC                             <  SRR4302533.2320187/94‑1 (MQ=60)

                                                                   ATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                            <  SRR4302533.3048143/94‑1 (MQ=60)

                                                                   ATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCG                            >  SRR4302533.2728670/1‑94 (MQ=60)

                                                                    TTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGA                           >  SRR4302533.4085970/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                          >  SRR4302533.2195748/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                          >  SRR4302533.3861751/1‑94 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                          <  SRR4302533.2067619/94‑1 (MQ=60)

                                                                     TGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAG                          <  SRR4302533.959229/94‑1 (MQ=60)

                                                                      GAACTCTTCGGTTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGC                         >  SRR4302533.4425528/1‑94 (MQ=60)

                                                                      GAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGC                         >  SRR4302533.3686974/1‑94 (MQ=60)

                                                                       AACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCA                        <  SRR4302533.1462274/94‑1 (MQ=60)

                                                                        ACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAA                       <  SRR4302533.2119028/94‑1 (MQ=60)

                                                                        ACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAA                       >  SRR4302533.22296/1‑94 (MQ=60)

                                                                        ACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAA                       >  SRR4302533.285214/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                      >  SRR4302533.5000955/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                      >  SRR4302533.4294064/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                      >  SRR4302533.5704744/1‑94 (MQ=60)

                                                                         CTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAC                      >  SRR4302533.3107900/1‑94 (MQ=60)

                                                                           CTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGT                    <  SRR4302533.3882006/94‑1 (MQ=60)

                                                                           CTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGGTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCCAGCAACGT                    >  SRR4302533.321934/1‑94 (MQ=60)

                                                                            TTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTC                   >  SRR4302533.20075/1‑94 (MQ=60)

                                                                            TTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTC                   <  SRR4302533.5179968/94‑1 (MQ=60)

                                                                              CGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAT                 >  SRR4302533.3819769/1‑94 (MQ=60)

                                                                               GGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATG                >  SRR4302533.4135650/1‑94 (MQ=60)

                                                                                GCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGC               >  SRR4302533.3865368/1‑94 (MQ=60)

                                                                                GCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGAAACGTCATGG               >  SRR4302533.1982749/1‑94 (MQ=60)

                                                                                 CTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCG              >  SRR4302533.330679/1‑94 (MQ=60)

                                                                                 CTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCG              <  SRR4302533.354369/94‑1 (MQ=60)

                                                                                  TTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGT             <  SRR4302533.5619137/94‑1 (MQ=60)

                                                                                  TTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGT             >  SRR4302533.2562803/1‑94 (MQ=60)

                                                                                   TTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTC            >  SRR4302533.1695227/1‑94 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC           <  SRR4302533.158438/94‑1 (MQ=60)

                                                                                    TAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCC           >  SRR4302533.5957679/1‑94 (MQ=60)

                                                                                         CCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT      >  SRR4302533.1335549/1‑94 (MQ=60)

                                                                                         CCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT      <  SRR4302533.4835805/94‑1 (MQ=60)

                                                                                         CCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT      <  SRR4302533.5800667/94‑1 (MQ=60)

                                                                                           CACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCG    >  SRR4302533.231031/1‑94 (MQ=60)

                                                                                           CACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCG    >  SRR4302533.2372828/1‑94 (MQ=60)

                                                                                           CACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCG    >  SRR4302533.4809715/1‑94 (MQ=60)

                                                                                           CACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCG    <  SRR4302533.4316547/94‑1 (MQ=60)

                                                                                             CCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  >  SRR4302533.5163427/1‑94 (MQ=60)

                                                                                             CCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  <  SRR4302533.348362/94‑1 (MQ=60)

                                                                                             CCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  <  SRR4302533.2837758/94‑1 (MQ=60)

                                                                                             CCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  <  SRR4302533.561081/94‑1 (MQ=60)

                                                                                             CCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGG  >  SRR4302533.4530330/1‑94 (MQ=60)

TCATCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTTCGGT  >  NC_000913/4097530‑4097716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`