Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,158,977 T→C V111A (GTC→GCC)  yijC → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,158,9770TC99.8% 1346.7 / ‑5.5 427V111A (GTC→GCC) yijChypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (198/226);  total (200/227)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.15e-01

Only 100 of 445 total aligned reads displayed.

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066
                                                                                          |                                                                                         
 ggTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGcctc                                                                                        <  1:5742799/93‑1 (MQ=255)
 ggTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGcctc                                                                                        >  2:2620542/1‑93 (MQ=255)
  gTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTcc                                                                                       <  1:7192540/93‑1 (MQ=255)
    tgatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcac                                                                                     >  1:3924500/1‑93 (MQ=255)
     gatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcaca                                                                                    <  2:1816445/93‑1 (MQ=255)
     gatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcaca                                                                                    <  2:1749539/93‑1 (MQ=255)
     gatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcaca                                                                                    <  1:5174307/93‑1 (MQ=255)
       tgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAtt                                                                                  <  2:3104430/93‑1 (MQ=255)
         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:2543362/93‑1 (MQ=255)
         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:4981709/93‑1 (MQ=255)
         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:1964224/93‑1 (MQ=255)
          gagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAt                                                                               >  1:1888064/1‑93 (MQ=255)
               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          <  1:9149745/93‑1 (MQ=255)
               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          >  2:6168050/1‑93 (MQ=255)
               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          >  2:4979899/1‑93 (MQ=255)
                tttAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGtt                                                                         >  2:7697054/1‑93 (MQ=255)
                gttAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGtt                                                                         <  1:3337054/92‑1 (MQ=255)
                 ttAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTc                                                                        >  2:7635049/1‑93 (MQ=255)
                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     <  2:1952473/93‑1 (MQ=255)
                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     <  2:3714918/93‑1 (MQ=255)
                     tGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCg                                                                    >  1:8540247/1‑93 (MQ=255)
                     tGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCg                                                                    <  2:33060/93‑1 (MQ=255)
                      tcTACGCCAGCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCgg                                                                   <  1:3249635/92‑1 (MQ=255)
                        tACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGta                                                                 >  2:4766143/1‑93 (MQ=255)
                        tACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGAGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGta                                                                 >  1:5386970/1‑93 (MQ=255)
                          cGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaat                                                               <  2:9708263/93‑1 (MQ=255)
                           gCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGtaata                                                              <  1:3123893/93‑1 (MQ=255)
                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGCGTTCATCGGtaataa                                                             >  1:7836940/1‑93 (MQ=255)
                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             >  1:6603663/1‑93 (MQ=255)
                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             >  2:8497016/1‑93 (MQ=255)
                             cAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTaataat                                                            >  2:4482892/1‑93 (MQ=255)
                             cAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGAGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTaataat                                                            >  2:1408227/1‑93 (MQ=255)
                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           <  2:6775014/93‑1 (MQ=255)
                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           >  1:9633162/1‑93 (MQ=255)
                               aCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATcc                                                          >  1:5862483/1‑93 (MQ=255)
                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         <  1:7375800/93‑1 (MQ=255)
                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         >  2:3216955/1‑93 (MQ=255)
                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         <  2:9500846/93‑1 (MQ=255)
                                  cATGCGCCAGGCGCTTCATCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATACTCCTaa                                                       <  2:1627304/93‑1 (MQ=255)
                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       >  1:676309/1‑93 (MQ=255)
                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  1:8341630/93‑1 (MQ=255)
                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  2:3533382/93‑1 (MQ=255)
                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  1:8835356/93‑1 (MQ=255)
                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  2:1022088/93‑1 (MQ=255)
                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       >  1:1014117/1‑93 (MQ=255)
                                  cATGCGACAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  2:6943964/93‑1 (MQ=255)
                                   aTGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAc                                                      >  2:2670088/1‑93 (MQ=255)
                                   aTGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAc                                                      <  2:2488024/93‑1 (MQ=255)
                                    tGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACg                                                     >  1:608243/1‑93 (MQ=255)
                                     gcgcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGc                                                    <  1:1081425/93‑1 (MQ=255)
                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 >  2:6453853/1‑93 (MQ=255)
                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                >  2:5474292/1‑93 (MQ=255)
                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  2:4323586/93‑1 (MQ=255)
                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  1:407692/93‑1 (MQ=255)
                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                >  1:9794229/1‑93 (MQ=255)
                                         cAGGCGCGTCAGCGTATCGCCAAAGGCAGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  1:5572363/93‑1 (MQ=255)
                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              <  2:8640867/93‑1 (MQ=255)
                                              gcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtt                                           >  1:8232962/1‑93 (MQ=255)
                                              gcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtt                                           <  2:3894399/93‑1 (MQ=255)
                                              gcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtt                                           >  1:9216674/1‑93 (MQ=255)
                                               cgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtta                                          >  1:5370367/1‑93 (MQ=255)
                                                gTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         >  1:4506032/1‑93 (MQ=255)
                                                gTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         >  1:4699001/1‑93 (MQ=255)
                                                gTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         >  2:2180618/1‑93 (MQ=255)
                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  1:8905269/1‑93 (MQ=255)
                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  2:339926/1‑93 (MQ=255)
                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        <  1:8159103/93‑1 (MQ=255)
                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  2:5689536/1‑93 (MQ=255)
                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  1:166534/1‑93 (MQ=255)
                                                  cAGCGTATCGCCAAATGCGGGAGTGTGATCCGCACCTCGGCCTCCCCATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatta                                       >  2:9233579/1‑93 (MQ=255)
                                                  cAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatta                                       <  2:2891543/93‑1 (MQ=255)
                                                  cAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatta                                       <  1:1225118/93‑1 (MQ=255)
                                                   aGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTtattat                                      >  1:6275239/1‑93 (MQ=255)
                                                   aGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTtattat                                      <  1:2369946/93‑1 (MQ=255)
                                                    gCGTATCGCGAAAGGGGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     <  1:6937805/93‑1 (MQ=255)
                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGc                                   >  2:5853664/1‑93 (MQ=255)
                                                       tATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCg                                  >  2:5949635/1‑93 (MQ=255)
                                                          cgacAAGGGCGGGAGAGTGCTCCGCACCTCGGCATCCACATATATGGAGTTCATCGGTAATAATCCTAACGACTTCCGGTAATTATTGCGGGa                               <  2:8992798/90‑1 (MQ=255)
                                                          cGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGa                               <  2:6304865/93‑1 (MQ=255)
                                                           gCCAAAGGCGGGAGTGTGATCCGAACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGaa                              <  2:5524707/93‑1 (MQ=255)
                                                           gCCAAAGGCGCGAGTGTGATCCGAACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGaa                              <  1:732768/93‑1 (MQ=255)
                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             <  1:7455819/93‑1 (MQ=255)
                                                             cAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACg                            >  2:7219080/1‑93 (MQ=255)
                                                               aaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCt                          <  2:4918975/93‑1 (MQ=255)
                                                                 ggCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTcc                        <  2:8286258/93‑1 (MQ=255)
                                                                 ggCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTcc                        >  1:2124081/1‑93 (MQ=255)
                                                                  gCGGGAGTTTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCg                       <  2:2356026/93‑1 (MQ=255)
                                                                    gggAGTGTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGc                     <  1:8667119/93‑1 (MQ=255)
                                                                      gAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCAc                   <  1:4267926/93‑1 (MQ=255)
                                                                      gAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCAc                   <  1:3449030/93‑1 (MQ=255)
                                                                      gAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCAc                   <  1:9496428/93‑1 (MQ=255)
                                                                         tgtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                <  1:3713329/93‑1 (MQ=255)
                                                                           tgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCg              >  2:4132229/1‑93 (MQ=255)
                                                                                    ccTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTACCGCCTTCAGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTc     >  2:6046844/1‑93 (MQ=255)
                                                                                    ccTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTc     >  1:6358395/1‑93 (MQ=255)
                                                                                    ccTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTc     >  1:7933977/1‑93 (MQ=255)
                                                                                    ccTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTc     >  1:9399897/1‑93 (MQ=255)
                                                                                     cTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCg    <  2:803332/93‑1 (MQ=255)
                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  2:5218261/1‑93 (MQ=255)
                                                                                       cGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTg  <  2:403545/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 240 total aligned reads displayed.
CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  NC_000913/4158885‑4159070
                                                                                            |                                                                                             
CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                              >  SRR4302540.5475115/1‑94 (MQ=60)
CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                              >  SRR4302540.6268731/1‑94 (MQ=60)
CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                              >  SRR4302540.9200451/1‑94 (MQ=60)
CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGCGTGATCCGCACCTCGGCC                                                                                              >  SRR4302540.4592010/1‑94 (MQ=60)
 ATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCT                                                                                             >  SRR4302540.3318382/1‑94 (MQ=60)
 ATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCT                                                                                             <  SRR4302540.2284499/94‑1 (MQ=60)
  TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTC                                                                                            <  SRR4302540.309794/94‑1 (MQ=60)
   GGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCC                                                                                           <  SRR4302540.5806109/94‑1 (MQ=60)
   GGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCC                                                                                           >  SRR4302540.9449893/1‑94 (MQ=60)
    GTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCA                                                                                          >  SRR4302540.3941412/1‑94 (MQ=60)
    GTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCA                                                                                          <  SRR4302540.7272714/94‑1 (MQ=60)
     TTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCAC                                                                                         <  SRR4302540.2950707/94‑1 (MQ=60)
     TTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCAC                                                                                         >  SRR4302540.3966963/1‑94 (MQ=60)
     GTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCAC                                                                                         <  SRR4302540.1833330/94‑1 (MQ=60)
      TGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACA                                                                                        >  SRR4302540.5445918/1‑94 (MQ=60)
      TGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACA                                                                                        >  SRR4302540.402044/1‑94 (MQ=60)
       GATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAT                                                                                       <  SRR4302540.7435810/94‑1 (MQ=60)
       GATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAT                                                                                       >  SRR4302540.7416468/1‑94 (MQ=60)
           GGAGCGGTTTAAGGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTAGCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302540.5872881/94‑1 (MQ=60)
           AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302540.1985559/94‑1 (MQ=60)
           AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302540.2570780/94‑1 (MQ=60)
           AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   >  SRR4302540.8638630/1‑94 (MQ=60)
           AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302540.2570779/94‑1 (MQ=60)
           AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302540.5035641/94‑1 (MQ=60)
           AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   >  SRR4302540.1908732/1‑94 (MQ=60)
            GAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATG                                                                                  <  SRR4302540.963210/94‑1 (MQ=60)
             AGCGGTTTAATGCTACGCCACCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302540.6866805/94‑1 (MQ=60)
             AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 >  SRR4302540.493923/1‑94 (MQ=60)
             AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 >  SRR4302540.572541/1‑94 (MQ=60)
               CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                               <  SRR4302540.5831487/94‑1 (MQ=60)
                GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              <  SRR4302540.7883200/94‑1 (MQ=60)
                GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              >  SRR4302540.4621828/1‑94 (MQ=60)
                GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              >  SRR4302540.6009954/1‑94 (MQ=60)
                 GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                             <  SRR4302540.2208/94‑1 (MQ=60)
                 GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                             <  SRR4302540.9259618/94‑1 (MQ=60)
                 GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                             >  SRR4302540.3862877/1‑94 (MQ=60)
                 GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGACTCCCCACTTATGGAGTT                                                                             >  SRR4302540.9258958/1‑94 (MQ=60)
                  TTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            <  SRR4302540.3481772/94‑1 (MQ=60)
                  TTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            <  SRR4302540.3481773/94‑1 (MQ=60)
                  TTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            >  SRR4302540.546113/1‑94 (MQ=60)
                  TTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            >  SRR4302540.9771829/1‑94 (MQ=60)
                   TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                           >  SRR4302540.3285317/1‑94 (MQ=60)
                   TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                           <  SRR4302540.1223950/94‑1 (MQ=60)
                    TAATGCTACGCCAACTCATGCGCCATGCGCGTCAGCAGATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          <  SRR4302540.1527723/94‑1 (MQ=60)
                    TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          >  SRR4302540.9644236/1‑94 (MQ=60)
                    TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          >  SRR4302540.8819626/1‑94 (MQ=60)
                    TAATACTACGCCAACCCAAGCGCCAGGCGCATCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          <  SRR4302540.1527725/94‑1 (MQ=60)
                     AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                         >  SRR4302540.9194835/1‑94 (MQ=60)
                     AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCATATCGCCAAAGGCGGGAGTGTGAGCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                         <  SRR4302540.7507332/94‑1 (MQ=60)
                      ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302540.8487350/94‑1 (MQ=60)
                      ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        >  SRR4302540.8639481/1‑94 (MQ=60)
                      ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        >  SRR4302540.1154937/1‑94 (MQ=60)
                       TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302540.5271132/1‑94 (MQ=60)
                       TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302540.3252871/1‑94 (MQ=60)
                       TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       <  SRR4302540.1149675/94‑1 (MQ=60)
                       TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       <  SRR4302540.4478828/94‑1 (MQ=60)
                       TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302540.1934250/1‑94 (MQ=60)
                        TCTACGCCAGCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGT                                                                      <  SRR4302540.3285029/94‑1 (MQ=60)
                        TCTACGCCAACTCAGGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGT                                                                      <  SRR4302540.6442729/94‑1 (MQ=60)
                        GCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGT                                                                      <  SRR4302540.702897/94‑1 (MQ=60)
                         CTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGAGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTA                                                                     >  SRR4302540.5446220/1‑94 (MQ=60)
                            CGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATA                                                                  >  SRR4302540.9816359/1‑94 (MQ=60)
                            CGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATA                                                                  <  SRR4302540.8783151/94‑1 (MQ=60)
                             GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 <  SRR4302540.3158013/94‑1 (MQ=60)
                             GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 <  SRR4302540.614324/94‑1 (MQ=60)
                             GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 >  SRR4302540.6676789/1‑94 (MQ=60)
                             GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 <  SRR4302540.8089768/94‑1 (MQ=60)
                               CAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATC                                                               <  SRR4302540.8055346/94‑1 (MQ=60)
                                AACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGGACCTCGGCCTCCACATTTATCGAGATCATTAGTAATCATCC                                                              >  SRR4302540.5927309/1‑94 (MQ=60)
                                AACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCC                                                              >  SRR4302540.4240333/1‑94 (MQ=60)
                                 ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             <  SRR4302540.4293919/94‑1 (MQ=60)
                                 ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             <  SRR4302540.7265649/94‑1 (MQ=60)
                                 ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             <  SRR4302540.7436594/94‑1 (MQ=60)
                                  CTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTA                                                            <  SRR4302540.7458002/94‑1 (MQ=60)
                                  CTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGAGTGATCCGCACCTCGGCCTCCACACTTATGGAGTTCATCGGTAATAATCCTA                                                            >  SRR4302540.9562134/1‑94 (MQ=60)
                                   TCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAA                                                           >  SRR4302540.683548/1‑94 (MQ=60)
                                   TCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAA                                                           >  SRR4302540.1024396/1‑94 (MQ=60)
                                    CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          >  SRR4302540.3002143/1‑94 (MQ=60)
                                    CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302540.1642163/94‑1 (MQ=60)
                                    CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302540.8937552/94‑1 (MQ=60)
                                    CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302540.8438450/94‑1 (MQ=60)
                                    CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302540.6996660/94‑1 (MQ=60)
                                    CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          >  SRR4302540.5314414/1‑94 (MQ=60)
                                     ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGTGTGCGTTCCGCACCTCGTCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAgc                                                         >  SRR4302540.6260119/1‑92 (MQ=60)
                                     ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         >  SRR4302540.8271274/1‑94 (MQ=60)
                                     ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         >  SRR4302540.8081872/1‑94 (MQ=60)
                                     ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         >  SRR4302540.5537766/1‑94 (MQ=60)
                                     ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         >  SRR4302540.6260118/1‑94 (MQ=60)
                                     ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         >  SRR4302540.614747/1‑94 (MQ=60)
                                       GCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCC                                                       >  SRR4302540.3737283/1‑94 (MQ=60)
                                       GCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCC                                                       >  SRR4302540.4288504/1‑94 (MQ=60)
                                        CGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCT                                                      <  SRR4302540.1718991/94‑1 (MQ=60)
                                         GTCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTT                                                     <  SRR4302540.1075000/94‑1 (MQ=60)
                                         GCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTT                                                     >  SRR4302540.5424601/1‑94 (MQ=60)
                                          CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                    <  SRR4302540.6621821/94‑1 (MQ=60)
                                          CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                    >  SRR4302540.9908948/1‑94 (MQ=60)
                                          CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                    <  SRR4302540.542913/94‑1 (MQ=60)
                                           CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302540.9285075/1‑94 (MQ=60)
                                           CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   <  SRR4302540.9546993/94‑1 (MQ=60)
                                           CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   <  SRR4302540.5759873/94‑1 (MQ=60)
                                           CAGGCGCGTCAGCGTATCGCCAAAGGCAGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   <  SRR4302540.5633717/94‑1 (MQ=60)
                                            AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302540.8979052/1‑94 (MQ=60)
                                              GCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGT                                                >  SRR4302540.5093301/1‑94 (MQ=60)
                                              GCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGT                                                <  SRR4302540.3975846/94‑1 (MQ=60)
                                               CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               >  SRR4302540.4779465/1‑94 (MQ=60)
                                               CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               >  SRR4302540.8328661/1‑94 (MQ=60)
                                               CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               >  SRR4302540.9327239/1‑94 (MQ=60)
                                                GCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTA                                              >  SRR4302540.5429393/1‑94 (MQ=60)
                                                 CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             >  SRR4302540.4554871/1‑94 (MQ=60)
                                                 CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302540.9236450/94‑1 (MQ=60)
                                                 CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             >  SRR4302540.4749228/1‑94 (MQ=60)
                                                  GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302540.168201/1‑94 (MQ=60)
                                                  GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAACAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302540.9008373/1‑94 (MQ=60)
                                                   TCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                           <  SRR4302540.8253837/94‑1 (MQ=60)
                                                   TCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                           >  SRR4302540.6640269/1‑94 (MQ=60)
                                                   TCAGCGTATCGCCAAAGGCGGGAGTGGGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                           >  SRR4302540.1962442/1‑94 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302540.3419853/94‑1 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          >  SRR4302540.8403620/1‑94 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302540.698929/94‑1 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302540.5854976/94‑1 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302540.2257059/94‑1 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302540.1237645/94‑1 (MQ=60)
                                                    CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          >  SRR4302540.6345051/1‑94 (MQ=60)
                                                     AGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATT                                         <  SRR4302540.2037483/94‑1 (MQ=60)
                                                     AGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATT                                         <  SRR4302540.9157530/94‑1 (MQ=60)
                                                     AGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATT                                         <  SRR4302540.2395471/94‑1 (MQ=60)
                                                      GCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTG                                        <  SRR4302540.2034435/94‑1 (MQ=60)
                                                      GCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTG                                        <  SRR4302540.7015030/94‑1 (MQ=60)
                                                      GCGTATCGCAAAAGGCGGGAGTGTGCTCCGAACCTCGGCCTACACATTTATGGAGTTCATCGGTAATAATCCTCACGCCTTCCGGTTATTATTG                                        <  SRR4302540.6365098/94‑1 (MQ=60)
                                                       CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                       >  SRR4302540.7322134/1‑94 (MQ=60)
                                                       CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                       <  SRR4302540.5506932/94‑1 (MQ=60)
                                                        GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      >  SRR4302540.3476791/1‑94 (MQ=60)
                                                        GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      >  SRR4302540.6025845/1‑94 (MQ=60)
                                                         TATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGG                                     <  SRR4302540.734474/94‑1 (MQ=60)
                                                          ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    >  SRR4302540.8972526/1‑94 (MQ=60)
                                                          ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    >  SRR4302540.92517/1‑94 (MQ=60)
                                                          ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGATAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    <  SRR4302540.9937342/94‑1 (MQ=60)
                                                           TCGCCAAAGGCGGGAGTGTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGA                                   <  SRR4302540.7980997/94‑1 (MQ=60)
                                                             GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302540.9443645/94‑1 (MQ=60)
                                                             GCCAAAGGCGCGAGTGTGATCCGAACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302540.740605/94‑1 (MQ=60)
                                                              CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                                <  SRR4302540.2166480/94‑1 (MQ=60)
                                                               CAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGC                               <  SRR4302540.7737685/94‑1 (MQ=60)
                                                                AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              <  SRR4302540.7510656/94‑1 (MQ=60)
                                                                AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              >  SRR4302540.7189081/1‑94 (MQ=60)
                                                                AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              >  SRR4302540.5073642/1‑94 (MQ=60)
                                                                AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGAGGGAACGCT                              >  SRR4302540.5073643/1‑94 (MQ=60)
                                                                  AGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCC                            <  SRR4302540.8365967/94‑1 (MQ=60)
                                                                  AGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCC                            >  SRR4302540.2146872/1‑94 (MQ=60)
                                                                   GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           >  SRR4302540.3694118/1‑94 (MQ=60)
                                                                   GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302540.6776876/94‑1 (MQ=60)
                                                                    GCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGG                          <  SRR4302540.8734112/94‑1 (MQ=60)
                                                                      GGGAGTGTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        <  SRR4302540.8767796/94‑1 (MQ=60)
                                                                      GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        <  SRR4302540.4730020/94‑1 (MQ=60)
                                                                      GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        <  SRR4302540.6775489/94‑1 (MQ=60)
                                                                      GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        >  SRR4302540.1043339/1‑94 (MQ=60)
                                                                      GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        >  SRR4302540.1006643/1‑94 (MQ=60)
                                                                        GAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACC                      <  SRR4302540.4314346/94‑1 (MQ=60)
                                                                        GAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACC                      <  SRR4302540.9608974/94‑1 (MQ=60)
                                                                        GAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACC                      <  SRR4302540.2522552/94‑1 (MQ=60)
                                                                        GAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACC                      <  SRR4302540.3486548/94‑1 (MQ=60)
                                                                        GAGTGTGAGCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACC                      <  SRR4302540.9608975/94‑1 (MQ=60)
                                                                         AGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCT                     >  SRR4302540.4720284/1‑94 (MQ=60)
                                                                          GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    >  SRR4302540.9897118/1‑94 (MQ=60)
                                                                          GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    >  SRR4302540.7633298/1‑94 (MQ=60)
                                                                          GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    >  SRR4302540.4480579/1‑94 (MQ=60)
                                                                           TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302540.5089419/94‑1 (MQ=60)
                                                                           TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   >  SRR4302540.7962844/1‑94 (MQ=60)
                                                                           TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302540.3753852/94‑1 (MQ=60)
                                                                           TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   >  SRR4302540.6398005/1‑94 (MQ=60)
                                                                            GTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGGACGCTCCGGCACCTCCG                  >  SRR4302540.3837082/1‑94 (MQ=60)
                                                                            GTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCG                  >  SRR4302540.8324581/1‑94 (MQ=60)
                                                                            GTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCG                  >  SRR4302540.1913440/1‑94 (MQ=60)
                                                                             TGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGC                 >  SRR4302540.8417251/1‑94 (MQ=60)
                                                                             TGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGC                 >  SRR4302540.7935455/1‑94 (MQ=60)
                                                                              GATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCT                <  SRR4302540.4210205/94‑1 (MQ=60)
                                                                               ATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTG               >  SRR4302540.7497409/1‑94 (MQ=60)
                                                                               ATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTG               <  SRR4302540.3990653/94‑1 (MQ=60)
                                                                                TCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGC              <  SRR4302540.8551940/94‑1 (MQ=60)
                                                                                 CCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTACGCTGCG             >  SRR4302540.8756435/1‑94 (MQ=60)
                                                                                  CGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGT            >  SRR4302540.1024768/1‑94 (MQ=60)
                                                                                    CCCCTCGGCCTTCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCGTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          <  SRR4302540.7805705/94‑1 (MQ=60)
                                                                                    CCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          <  SRR4302540.7805704/94‑1 (MQ=60)
                                                                                    CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          >  SRR4302540.3346050/1‑94 (MQ=60)
                                                                                    CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          >  SRR4302540.8907556/1‑94 (MQ=60)
                                                                                     ACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         >  SRR4302540.8026451/1‑94 (MQ=60)
                                                                                     ACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         >  SRR4302540.6429201/1‑94 (MQ=60)
                                                                                     ACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         >  SRR4302540.9335557/1‑94 (MQ=60)
                                                                                     ACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         >  SRR4302540.9511731/1‑94 (MQ=60)
                                                                                       CTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGT       >  SRR4302540.6189975/1‑94 (MQ=60)
                                                                                       CTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGT       <  SRR4302540.252323/94‑1 (MQ=60)
                                                                                        TCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG      <  SRR4302540.3216965/94‑1 (MQ=60)
                                                                                        TCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG      <  SRR4302540.9644631/94‑1 (MQ=60)
                                                                                        TCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG      <  SRR4302540.6262698/94‑1 (MQ=60)
                                                                                         CGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGC     >  SRR4302540.6220107/1‑94 (MQ=60)
                                                                                          GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    >  SRR4302540.6696550/1‑94 (MQ=60)
                                                                                          GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    >  SRR4302540.5759116/1‑94 (MQ=60)
                                                                                           GCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCG   <  SRR4302540.2011312/94‑1 (MQ=60)
                                                                                           GCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCG   >  SRR4302540.1819818/1‑94 (MQ=60)
                                                                                            CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302540.1573178/1‑94 (MQ=60)
                                                                                            CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302540.824554/1‑94 (MQ=60)
                                                                                            |                                                                                             
CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  NC_000913/4158885‑4159070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑