Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,203,198 |
Δ1 bp |
coding (312/1290 nt) |
purD ← |
phosphoribosylglycinamide synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,203,195 | 0 | T | . | 98.8%
| 722.1
/ ‑0.1
| 163 | coding (315/1290 nt) | purD | phosphoribosylglycinamide synthetase |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base . (57/104); total (59/104) |
| Fisher's exact test for biased strand distribution p-value = 1.30e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 258 total aligned reads displayed.
CGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > NC_000913/4203103‑4203283
|
cGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCCGGAAATCTTTTGTAAACGCt > 2:5405551/1‑93 (MQ=255)
cGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCt < 2:7626565/93‑1 (MQ=255)
gCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCtt < 2:4041678/93‑1 (MQ=255)
cAGAGACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCttt < 2:1986516/93‑1 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGCAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATATTTTGTGCACGCctttt > 1:4766891/1‑92 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAAAGCtttgt > 2:8547101/1‑91 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCtttga < 2:9452388/93‑3 (MQ=255)
aTACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCtttgag < 1:2740697/93‑4 (MQ=255)
tACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTTAACGCtttttgc > 2:4891735/1‑90 (MQ=255)
tACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAAAGCtttgagc > 1:6243414/1‑89 (MQ=255)
aCGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGcc < 1:3416889/93‑1 (MQ=255)
cggcgcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAACCGC‑TTTGAGCCTTcc < 1:8933620/91‑1 (MQ=255)
cAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTcc < 2:3986334/93‑1 (MQ=255)
cAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTcc < 2:1375654/93‑1 (MQ=255)
cAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTcc < 1:1939804/93‑1 (MQ=255)
aGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTGGTAAACGC‑TTTGAGCCTTTCa > 1:6459687/1‑93 (MQ=255)
gcgcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGC‑TTTGAGCCCTcccg > 1:3877675/1‑91 (MQ=255)
cgcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAAACCTTTT‑AGCCTTCCAGt > 1:8319248/1‑93 (MQ=255)
gcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGtt < 2:8894232/93‑1 (MQ=255)
cAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTAAAAGCTTTTG‑GCCTTCCCGTTg > 2:254136/1‑93 (MQ=255)
cAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTg < 1:1521724/93‑1 (MQ=255)
cAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGCGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTg < 1:3119040/93‑1 (MQ=255)
ggTTCTACCTCGGTGAAGTTCTGGTATACCGCCGTAGGGATCTTATGGCGGGGCAGGGAATCTTTGGGGAACGC‑TTTGGGGCTTCCAGTTtgg > 1:5467564/1‑93 (MQ=255)
gTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTTAACGCTTTT‑AGCCTTTCAGTTTGGc > 2:7599006/1‑93 (MQ=255)
ttCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTAAACGCTTTT‑AGCCTTCCAGTTggggc > 2:1302189/1‑91 (MQ=255)
cTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAAACTTTGGTAAACGC‑TTTGAGCCTTCCAGTTTGGcccc > 2:3261890/1‑91 (MQ=255)
tACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAACGCCTTT‑AGCCTTCCCGTTGGGgcgcc > 2:326632/1‑92 (MQ=255)
tACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑CTTGAGCCTTCCCGTTGGGccccc > 1:7907273/1‑90 (MQ=255)
cTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATATTTTGTGAAAGC‑TTTGAGGCTTTCCGTTGGGGCGCCCCt > 2:5387427/1‑93 (MQ=255)
tCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGGCTTCCAGATGGGGGGCACCTg > 2:9404201/1‑93 (MQ=255)
cGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGc < 2:8238113/93‑1 (MQ=255)
ggTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCg > 1:6740228/1‑93 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTTGTAAACGC‑TTTGAGCCCTCCAGTTGGGGCGCACCTGCgg > 1:844725/1‑93 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCgg > 2:7542801/1‑93 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTTAACGCTTTT‑AGACTTCCCGTTTGGGCGCACCTGCgg > 2:5882921/1‑93 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCgg < 1:2067106/93‑1 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCgg < 1:7252624/93‑1 (MQ=255)
gTGAAGTCCTGGTATTCCGCCGGAGGGATCTTATGGCGGGCCAGGGAATTTTTGGGAAACGC‑CTTGTGCCTTCCAGTTGGGGCGCACCCGCgg > 2:7725234/1‑93 (MQ=255)
gAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGGAATCTTTTGTGAAAGC‑TTTGAGGCTTTCAGTTGGGGCGCCCCTGCgggt > 1:8793476/1‑91 (MQ=255)
gAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGtt < 1:7093015/93‑1 (MQ=255)
aaGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTg < 1:4484244/93‑1 (MQ=255)
ttCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGc < 2:9672968/93‑1 (MQ=255)
ttCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAATTTTGGTAAACGGTTTTG‑GGCTGTCAGTTGGGGCGGCCCTGCGGGTgggg > 2:2919878/1‑92 (MQ=255)
tCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGcc < 2:2985904/93‑1 (MQ=255)
tCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGCTTTT‑AGGCCTCCAGTTGGGCCGCACCTGCGGGTgggac > 1:2445627/1‑91 (MQ=255)
ggTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAACTTTGGGAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGAGGGTGGGGCgga > 2:1701380/1‑91 (MQ=255)
ttCCGCCGTAGGGATCTTATGGCGGGGCAGGGAATCTTTGGTGAACGCTTTT‑AGCCTTCCCGTTGGGGCGCACCTGCGGGTGGGGCGgagaat > 2:598933/1‑91 (MQ=255)
ttCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCCGTTGGGCCGAAGAtt > 1:3636790/1‑93 (MQ=255)
ttCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGAtt < 2:4662168/93‑1 (MQ=255)
ccgccgTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGGAAA‑ACCTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTTGGCCGGAGAtttt > 2:7101587/1‑93 (MQ=255)
ccgccgTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGCCGAAGAtttt > 2:2208916/1‑93 (MQ=255)
cgccgTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTc < 2:6138128/93‑1 (MQ=255)
cccgTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCa < 1:9894585/92‑1 (MQ=255)
gTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATTTTCAGcc > 1:442645/1‑93 (MQ=255)
gTAGGGATCTTATGGCGGGCCAGGAAATTTTTGGGAAACGC‑TTTGAGCCTTCCAGTTGGGACGCACCTGCCGGTGGGACGAAGATTTTCAggc > 2:1076351/1‑91 (MQ=255)
gTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGCTTTT‑AGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGcc > 1:1131191/1‑93 (MQ=255)
gggATCTTATGGCGGGCCCGGAAATCTTTGGTAAACGC‑CTTGAGCCTTCCAGTTTGGGCGCACCTGCGGGTGGGCCGGAGATTTTCAGACcgg > 2:912820/1‑93 (MQ=255)
ggATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCcggc < 2:7992541/93‑1 (MQ=255)
gATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCcggcg < 1:7746830/93‑1 (MQ=255)
aTCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCcggcgg < 2:5904832/93‑1 (MQ=255)
aTCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCcggcgg > 2:8317389/1‑93 (MQ=255)
tCTTATGGCGGGCCCGGAAATCTTTTGGAAAAGCTTTT‑TGCCTTCCAGTTGGGGCGCACCTGCGGGTGGGCCGCAGATTTTCAGCCcggcggg > 2:6963899/1‑92 (MQ=255)
tGGCGGGCCAGGAAATCTTTTGTAAAAGCTTTT‑AGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGCCGAAGATTTTTAGCCCCGCGGGGCCGa > 2:7379781/1‑93 (MQ=255)
tGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGa < 1:7370070/93‑1 (MQ=255)
gCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAg < 1:1732086/93‑1 (MQ=255)
gCGGCCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAg < 2:9485915/93‑1 (MQ=255)
ggggCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAgg < 1:4187424/92‑1 (MQ=255)
cGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAgg < 1:4927771/93‑1 (MQ=255)
gggCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGt < 2:2590196/93‑1 (MQ=255)
gggCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGt > 2:506654/1‑93 (MQ=255)
gCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTAt < 2:6363256/93‑1 (MQ=255)
ccAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATc > 1:8177945/1‑93 (MQ=255)
cAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGCAAGGTATCg > 1:5104466/1‑93 (MQ=255)
aGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGa > 1:4211441/1‑93 (MQ=255)
aGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGa > 1:4659181/1‑93 (MQ=255)
aGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGa < 2:2505787/93‑1 (MQ=255)
aGGAAAGCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGa < 2:2307710/93‑1 (MQ=255)
ggAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAc > 1:2387485/1‑93 (MQ=255)
ggAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAc < 1:9733275/93‑1 (MQ=255)
ggAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAc > 1:5269731/1‑93 (MQ=255)
gAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAcc > 1:9087775/1‑93 (MQ=255)
aaaTCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCa < 2:4223561/93‑1 (MQ=255)
aaTCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAc < 2:3795351/93‑1 (MQ=255)
aTCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACg > 1:5808464/1‑93 (MQ=255)
cTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGcc > 1:2863167/1‑93 (MQ=255)
cTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGcc > 1:5498584/1‑93 (MQ=255)
cTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGcc > 1:4049838/1‑93 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCt > 1:3180948/1‑93 (MQ=255)
ttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGccct > 2:4415494/1‑91 (MQ=255)
ttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCtt < 1:5528191/93‑1 (MQ=255)
ttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCtt > 1:7948030/1‑93 (MQ=255)
tGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCttt < 1:2636993/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc > 1:10045837/1‑93 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc > 1:7968778/1‑93 (MQ=255)
gTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCa < 1:2003836/93‑1 (MQ=255)
tAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAc > 1:9299080/1‑93 (MQ=255)
tAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAc > 2:1190313/1‑93 (MQ=255)
tAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAc < 1:1051651/93‑1 (MQ=255)
aaaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAcc < 1:1281396/93‑1 (MQ=255)
aaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCa > 1:4134233/1‑93 (MQ=255)
|
CGCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > NC_000913/4203103‑4203283
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGCT > NC_000913/4203107‑4203291
|
GATGCGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAG < SRR4302540.686363/94‑1 (MQ=60)
GATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAG < SRR4302540.1790174/94‑1 (MQ=60)
ATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAAAGC‑TTTGAGC > SRR4302540.6312894/1‑94 (MQ=60)
ATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGC < SRR4302540.2770290/94‑1 (MQ=60)
TACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATTTTTTGTAAAAGC‑TTTGAGCC > SRR4302540.5106694/1‑94 (MQ=60)
ACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCT < SRR4302540.3454070/94‑1 (MQ=60)
ACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCT < SRR4302540.966655/94‑1 (MQ=60)
GCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTTGTAAACGCTTTT‑AGCCTTC > SRR4302540.2716481/1‑94 (MQ=60)
CCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGGAAACGC‑TTTGAGGCTTCC > SRR4302540.925650/1‑94 (MQ=60)
CCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCC < SRR4302540.2411952/94‑1 (MQ=60)
CCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCC < SRR4302540.7247946/94‑1 (MQ=60)
CGGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAACCGC‑TTTGAGCCTTCCA < SRR4302540.9038038/94‑1 (MQ=60)
CAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTGGTAAACGC‑TTTGAGCCTTTCA > SRR4302540.6531584/1‑94 (MQ=60)
CAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCA < SRR4302540.1960930/94‑1 (MQ=60)
AGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAG < SRR4302540.2153883/94‑1 (MQ=60)
GCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAAACCTTTT‑AGCCTTCCAGT > SRR4302540.8415820/1‑94 (MQ=60)
GCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGT < SRR4302540.3537016/94‑1 (MQ=60)
caggtgcggCCTCGGTGAAGTTCTGGTATGCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGG < SRR4302540.3791342/85‑1 (MQ=60)
cacgctcgcCCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGG < SRR4302540.3791343/85‑1 (MQ=60)
CAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTGGTAAACGCTTTT‑AGCCTTCCAGTTTG > SRR4302540.5487338/1‑94 (MQ=60)
CAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGG < SRR4302540.1538569/94‑1 (MQ=60)
CAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGCGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGG < SRR4302540.3153131/94‑1 (MQ=60)
AGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTTGG > SRR4302540.4681267/1‑94 (MQ=60)
AGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGG < SRR4302540.1240039/94‑1 (MQ=60)
GGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTTGGAAAAGC‑TTTGAGCCTTCCAGTTGGGC > SRR4302540.9883403/1‑94 (MQ=60)
GGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGCTTTT‑AGCCTTCCAGTTGGGC > SRR4302540.5042125/1‑94 (MQ=60)
GTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCC < SRR4302540.319754/94‑1 (MQ=60)
TCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGC < SRR4302540.4195221/94‑1 (MQ=60)
CTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCC > SRR4302540.252704/1‑94 (MQ=60)
CTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑CTTGAGCCTTCCCGTTGGGCCccc > SRR4302540.7999483/1‑91 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCT > SRR4302540.9137973/1‑94 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCT < SRR4302540.2807826/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTG < SRR4302540.8259285/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTG > SRR4302540.1105793/1‑94 (MQ=60)
TCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGC < SRR4302540.7207091/94‑1 (MQ=60)
CGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCG > SRR4302540.6814682/1‑94 (MQ=60)
GGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTTGTAAACGC‑TTTGAGCCCTCCAGTTGGGGCGCACCTGCGG > SRR4302540.853688/1‑94 (MQ=60)
GGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGGAAAAGC‑TTTGAGCCTTCCAGTTGGGGCGCACCCGCGG > SRR4302540.4092167/1‑94 (MQ=60)
GTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGT > SRR4302540.8044859/1‑94 (MQ=60)
GTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGT < SRR4302540.7333559/94‑1 (MQ=60)
GTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGT < SRR4302540.2089343/94‑1 (MQ=60)
ttaagttcgggtaggCCGCCGTAGGGAGCGTATGGCGGTCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCGTCCAGTTGGGCCGCACCTGCGGTT < SRR4302540.4445488/79‑1 (MQ=60)
TGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACgtcatgg < SRR4302540.218292/94‑8 (MQ=60)
TGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTT < SRR4302540.4445490/94‑1 (MQ=60)
GAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTG < SRR4302540.8336410/94‑1 (MQ=60)
GAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTG < SRR4302540.413556/94‑1 (MQ=60)
GAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTG < SRR4302540.7171948/94‑1 (MQ=60)
GAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTG < SRR4302540.6407143/94‑1 (MQ=60)
AAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGG < SRR4302540.4532879/94‑1 (MQ=60)
GTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAAACTTTGGTAAACGC‑TTTGAGCCTTTCAGGTGGGCCGCACCTGCGGTTGGGC > SRR4302540.7519912/1‑94 (MQ=60)
GTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCCCCCGCGGGTGGGC > SRR4302540.8469086/1‑94 (MQ=60)
TTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGTGCC > SRR4302540.4743122/1‑94 (MQ=60)
TTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTTTGGCCGCACCCGCGGGTGGGGC > SRR4302540.4743123/1‑94 (MQ=60)
TTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCC < SRR4302540.5544558/94‑1 (MQ=60)
TTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGCTTTT‑AGGCCTCCAGTTGGGCCGCACCTGCGGGTGGGAC > SRR4302540.2471961/1‑94 (MQ=60)
TTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGGAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCCGCGGTTGGGCC > SRR4302540.5433686/1‑94 (MQ=60)
TCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCG < SRR4302540.3762826/94‑1 (MQ=60)
TCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCG < SRR4302540.1017939/94‑1 (MQ=60)
CTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGCAATCTTTGGTAAACGC‑CTTGAGCCTTCCAGTTGGGGCGCACCcccggctggggcga > SRR4302540.5730553/1‑80 (MQ=60)
CTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAAACTTTGGCAAACGC‑TTTGAGTCTTCCCGTTCGGGCGCACCTGCGGGTGGGCGGA > SRR4302540.1224843/1‑94 (MQ=41)
CTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTT‑AGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGA > SRR4302540.5730552/1‑94 (MQ=60)
TGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTTGGGCGCACCTGCGGGTGGGCCGAA > SRR4302540.4057016/1‑94 (MQ=60)
TGGTATTCCGCCGTAGGGATCTTAGGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAA < SRR4302540.8181906/94‑1 (MQ=60)
GGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAG > SRR4302540.1132529/1‑94 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCCGTTGGGCCGAAGATT > SRR4302540.3676602/1‑94 (MQ=60)
ATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATT > SRR4302540.9183168/1‑94 (MQ=60)
TCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATTTT > SRR4302540.9506425/1‑94 (MQ=60)
CGACGTAGGGATCTTATGGCGGGCAAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCTCCTGCGGTTGGGCCGAAGATTTTC < SRR4302540.8334801/94‑1 (MQ=60)
CCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAG < SRR4302540.10010133/94‑1 (MQ=60)
CCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTTGTAAACGC‑TTTGAGCCTTCCCGTTGGGACGCACCTGCGGTTGGGGCGAAGATTTTttgc > SRR4302540.7995731/1‑90 (MQ=60)
CCGTAGGGATCTTATGGCGGGCCCGGAAATATTTGGTAAAAGC‑TTTGAGACTTCCAGTTTGGCCGCCCCTGCGGTTGGGGCGAAGAattttaga > SRR4302540.4020369/1‑86 (MQ=45)
CCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGC < SRR4302540.1584195/94‑1 (MQ=60)
CGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATTTTCAGCC > SRR4302540.447357/1‑94 (MQ=60)
CGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGCTTTT‑AGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCC > SRR4302540.1142964/1‑94 (MQ=60)
CGTAGGGATCTTATGGCGGGCCAGGAAAACTTTGGGAAACGC‑TTTGAGCCTTCCCGTTGGGGCGCACCTGCGGTTGGGCCGAAGATTTTCAGCC > SRR4302540.2025408/1‑94 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGGAGATTTTCAGCCC > SRR4302540.6203528/1‑94 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAC‑CCTTTGACCCCTACAGTTGGGCCGCAACTGCGGTTGGCCGCAAGATTTTTAGCCC > SRR4302540.6662629/1‑94 (MQ=41)
TAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAAAGCTTTT‑AGCCTTCCCGTTGGGCCGCACCCGCGGGTGGGCCGCAGATTTTTAACCCG > SRR4302540.1942846/1‑94 (MQ=54)
TAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCG < SRR4302540.8776136/94‑1 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGGTGGGCCGGAGATTTTCAGCCCCGC > SRR4302540.1911685/1‑94 (MQ=60)
GGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGACTTCCAGTTGGGCCGCACCTGCGGCTGGGCCGAAGAATTTCAGCCCGGCG > SRR4302540.4569813/1‑94 (MQ=60)
GGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCGTTCCAGTTGGGCCGCACCGGCGGTTGGGCCGAAGATTTTCAGCCCGGCG < SRR4302540.6879977/94‑1 (MQ=60)
GATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGG < SRR4302540.7837283/94‑1 (MQ=60)
TCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCG < SRR4302540.2029925/94‑1 (MQ=60)
TTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCG < SRR4302540.5268769/94‑1 (MQ=60)
ATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGA < SRR4302540.9274016/94‑1 (MQ=60)
TGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAA < SRR4302540.5452534/94‑1 (MQ=60)
TGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAA < SRR4302540.3287138/94‑1 (MQ=60)
TGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAA < SRR4302540.7452223/94‑1 (MQ=60)
GGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAG > SRR4302540.4498449/1‑94 (MQ=60)
GCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGG < SRR4302540.2880207/94‑1 (MQ=60)
GCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGG < SRR4302540.1750779/94‑1 (MQ=60)
GGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGT < SRR4302540.4232947/94‑1 (MQ=60)
CGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGT < SRR4302540.4980890/94‑1 (MQ=60)
GCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATG > SRR4302540.3038499/1‑94 (MQ=60)
GCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATC < SRR4302540.5692498/94‑1 (MQ=60)
GCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATC > SRR4302540.8272937/1‑94 (MQ=60)
CCAGGAAATCTTTGTGAAACGC‑TTTGACCCTTCCAGTTGGGCCGCACCTGCGTTTGGG‑CGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGA < SRR4302540.6536231/94‑1 (MQ=60)
CCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGCAAGGTATCG > SRR4302540.5159724/1‑94 (MQ=60)
CAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGA > SRR4302540.4257298/1‑94 (MQ=60)
CAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGA > SRR4302540.4709048/1‑94 (MQ=60)
CAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGA > SRR4302540.6452887/1‑94 (MQ=60)
CAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCCGCGGCGCCGGAGGTATCGA > SRR4302540.7998953/1‑94 (MQ=60)
AGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAC > SRR4302540.7743356/1‑94 (MQ=60)
AGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAC > SRR4302540.3689488/1‑94 (MQ=60)
AGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAC > SRR4302540.8008/1‑94 (MQ=60)
AGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAC > SRR4302540.5327253/1‑94 (MQ=60)
AGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGAC > SRR4302540.2413215/1‑94 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC > SRR4302540.8015547/1‑94 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302540.9847565/94‑1 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC > SRR4302540.9196950/1‑94 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302540.1298215/94‑1 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302540.5564434/94‑1 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302540.2507885/94‑1 (MQ=60)
GAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCA > SRR4302540.198955/1‑94 (MQ=60)
AATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACG > SRR4302540.5872657/1‑94 (MQ=60)
AATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACG < SRR4302540.289539/94‑1 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGGTTTTCAGCCCGGCGGCGCGGAAGGTTTCGACCACGCT > SRR4302540.5559124/1‑94 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCC > SRR4302540.4093499/1‑94 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCC > SRR4302540.5559123/1‑94 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCC > SRR4302540.2894216/1‑94 (MQ=60)
CTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCT > SRR4302540.3215505/1‑94 (MQ=60)
TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTT > SRR4302540.8040683/1‑94 (MQ=60)
TTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTT < SRR4302540.5589075/94‑1 (MQ=60)
TGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTC > SRR4302540.10162620/1‑94 (MQ=60)
TGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTC > SRR4302540.8061638/1‑94 (MQ=60)
TGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTC > SRR4302540.2011146/1‑94 (MQ=60)
TGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTC < SRR4302540.2665551/94‑1 (MQ=60)
GTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAC > SRR4302540.9410168/1‑94 (MQ=60)
GTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAC < SRR4302540.2025526/94‑1 (MQ=60)
TAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACC < SRR4302540.1062351/94‑1 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302540.9911989/94‑1 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302540.1294611/94‑1 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302540.3353644/94‑1 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > SRR4302540.4178957/1‑94 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTGTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302540.1294612/94‑1 (MQ=60)
AACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAG < SRR4302540.2452951/94‑1 (MQ=60)
aaggcTTTGAGCCGTCCAGTTGGGCCTCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAG < SRR4302540.2452950/89‑1 (MQ=60)
ACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGC > SRR4302540.439698/1‑94 (MQ=60)
CGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCG < SRR4302540.844035/94‑1 (MQ=60)
CGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCAGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCG > SRR4302540.2808040/1‑94 (MQ=60)
gcTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGG > SRR4302540.108677/3‑94 (MQ=60)
CTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGC > SRR4302540.6006921/1‑94 (MQ=60)
CTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGC > SRR4302540.6760042/1‑94 (MQ=60)
CTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGC > SRR4302540.6760043/1‑94 (MQ=60)
TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCG > SRR4302540.8053262/1‑94 (MQ=60)
TGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGCT < SRR4302540.5325814/94‑1 (MQ=60)
TGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGCT > SRR4302540.1478758/1‑94 (MQ=60)
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GATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGATTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGCT > NC_000913/4203107‑4203291
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
