Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATTC  >  NC_000913/2349316‑2349500
                                                                                           |                                                                                             
AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCA                                                                                             >  SRR4302540.663961/1‑94 (MQ=60)
AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCA                                                                                             >  SRR4302540.9472684/1‑94 (MQ=60)
 GGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCAT                                                                                            <  SRR4302540.4915783/94‑1 (MQ=60)
  GAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATA                                                                                           >  SRR4302540.1439369/1‑94 (MQ=60)
      CCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGA                                                                                       >  SRR4302540.6288178/1‑94 (MQ=60)
       CGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAA                                                                                      >  SRR4302540.3507992/1‑94 (MQ=60)
        GATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAA                                                                                     >  SRR4302540.6058229/1‑94 (MQ=60)
        GATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAA                                                                                     >  SRR4302540.4623310/1‑94 (MQ=60)
        GATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAA                                                                                     <  SRR4302540.2037160/94‑1 (MQ=60)
        GATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAA                                                                                     <  SRR4302540.2037161/94‑1 (MQ=60)
         ATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAA                                                                                    >  SRR4302540.9772777/1‑94 (MQ=60)
         ATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAA                                                                                    <  SRR4302540.9710588/94‑1 (MQ=60)
          TAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGCTGGTCACCAGTGCCATAAAGAAAAC                                                                                   >  SRR4302540.8317100/1‑94 (MQ=60)
          TAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAAC                                                                                   <  SRR4302540.2093808/94‑1 (MQ=60)
          TAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAAC                                                                                   <  SRR4302540.1697583/94‑1 (MQ=60)
            ACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGC                                                                                 >  SRR4302540.187627/1‑94 (MQ=60)
             CAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCC                                                                                <  SRR4302540.6000878/94‑1 (MQ=60)
             CAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCC                                                                                >  SRR4302540.5899718/1‑94 (MQ=60)
             CAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCC                                                                                <  SRR4302540.2848704/94‑1 (MQ=60)
             CAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCC                                                                                >  SRR4302540.9000491/1‑94 (MQ=60)
              AATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCG                                                                               <  SRR4302540.8007251/94‑1 (MQ=60)
              AATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCG                                                                               >  SRR4302540.3112449/1‑94 (MQ=60)
              AATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCG                                                                               <  SRR4302540.6046213/94‑1 (MQ=60)
               ATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGG                                                                              >  SRR4302540.9421480/1‑94 (MQ=60)
                TCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGT                                                                             >  SRR4302540.5242792/1‑94 (MQ=60)
                 CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTT                                                                            >  SRR4302540.9331309/1‑94 (MQ=60)
                 CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTT                                                                            >  SRR4302540.947455/1‑94 (MQ=60)
                 CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACACCGGTT                                                                            >  SRR4302540.98374/1‑94 (MQ=60)
                  ATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTG                                                                           >  SRR4302540.5695293/1‑94 (MQ=60)
                  ATACAAATCATATCGACGGTTGGGTTACCTGCCGGGATCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCGGGTTG                                                                           >  SRR4302540.5015138/1‑94 (MQ=60)
                   TACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGC                                                                          >  SRR4302540.664164/1‑94 (MQ=60)
                    ACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCC                                                                         >  SRR4302540.1638326/1‑94 (MQ=60)
                     CAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCC                                                                        >  SRR4302540.178962/1‑94 (MQ=60)
                     CAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCC                                                                        >  SRR4302540.8261759/1‑94 (MQ=60)
                      AAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCC                                                                       >  SRR4302540.155380/1‑94 (MQ=60)
                        ATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCAC                                                                     <  SRR4302540.1710490/94‑1 (MQ=60)
                        ATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCAC                                                                     <  SRR4302540.1710489/94‑1 (MQ=60)
                        ATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCAC                                                                     <  SRR4302540.1955506/94‑1 (MQ=60)
                        ATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCAC                                                                     <  SRR4302540.5731298/94‑1 (MQ=60)
                         TCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACG                                                                    <  SRR4302540.9819715/94‑1 (MQ=60)
                         TCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACG                                                                    <  SRR4302540.5185941/94‑1 (MQ=60)
                          CATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGG                                                                   >  SRR4302540.7080212/1‑94 (MQ=60)
                          CATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGG                                                                   <  SRR4302540.5730662/94‑1 (MQ=60)
                           ATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGT                                                                  >  SRR4302540.408352/1‑94 (MQ=60)
                           ATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGT                                                                  <  SRR4302540.6964632/94‑1 (MQ=60)
                             ATCGACGGTTGGGTTACCTGCCGGGTTCATCCCGTAAACGATAGTCGCGATGTTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGgtc                                                                >  SRR4302540.7666250/1‑91 (MQ=60)
                             ATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTG                                                                >  SRR4302540.4767759/1‑94 (MQ=60)
                             ATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTG                                                                >  SRR4302540.7666251/1‑94 (MQ=60)
                              TCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGC                                                               <  SRR4302540.7306529/94‑1 (MQ=60)
                               GGACGGTTGGGTTATTTGCCGCGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCC                                                              <  SRR4302540.9532161/94‑1 (MQ=60)
                               CGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCC                                                              >  SRR4302540.3303774/1‑94 (MQ=60)
                               CGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCC                                                              >  SRR4302540.3412995/1‑94 (MQ=60)
                                GACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCA                                                             >  SRR4302540.1623120/1‑94 (MQ=60)
                                GACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCA                                                             <  SRR4302540.8130664/94‑1 (MQ=60)
                                 GCGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC                                                            <  SRR4302540.2047291/94‑1 (MQ=60)
                                  CGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACG                                                           >  SRR4302540.1875498/1‑94 (MQ=60)
                                  CGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACG                                                           >  SRR4302540.3866233/1‑94 (MQ=60)
                                   GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG                                                          >  SRR4302540.4543525/1‑94 (MQ=60)
                                   GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG                                                          >  SRR4302540.7245673/1‑94 (MQ=60)
                                   GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG                                                          >  SRR4302540.4638136/1‑94 (MQ=60)
                                      TGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAG                                                       <  SRR4302540.8870823/94‑1 (MQ=60)
                                      TGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAG                                                       >  SRR4302540.476255/1‑94 (MQ=60)
                                        GGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGAC                                                     >  SRR4302540.9227028/1‑94 (MQ=60)
                                         GTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACT                                                    <  SRR4302540.7152451/94‑1 (MQ=60)
                                         GTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACT                                                    >  SRR4302540.1869305/1‑94 (MQ=60)
                                          TTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTT                                                   >  SRR4302540.6039201/1‑94 (MQ=60)
                                          TTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTT                                                   >  SRR4302540.7786103/1‑94 (MQ=60)
                                          TTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTT                                                   >  SRR4302540.90499/1‑94 (MQ=60)
                                           TACCTGCCGGGTCCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTT                                                  <  SRR4302540.2926447/94‑1 (MQ=60)
                                           GACCTGCCGGGGTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTT                                                  <  SRR4302540.5205971/94‑1 (MQ=60)
                                            ACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTA                                                 >  SRR4302540.7206466/1‑94 (MQ=60)
                                            ACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTA                                                 <  SRR4302540.5308804/94‑1 (MQ=60)
                                            ACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTA                                                 >  SRR4302540.7014714/1‑94 (MQ=60)
                                             CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                <  SRR4302540.906877/94‑1 (MQ=60)
                                             CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                <  SRR4302540.1969687/94‑1 (MQ=60)
                                             CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCTTAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                >  SRR4302540.6449343/1‑94 (MQ=60)
                                             CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                <  SRR4302540.3650546/94‑1 (MQ=60)
                                               TGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCC                                              >  SRR4302540.8930969/1‑94 (MQ=60)
                                                GCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCG                                             >  SRR4302540.2033791/1‑94 (MQ=60)
                                                GCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCG                                             >  SRR4302540.6552409/1‑94 (MQ=60)
                                                  CGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAC                                           >  SRR4302540.3757077/1‑94 (MQ=60)
                                                   GGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACA                                          >  SRR4302540.3331624/1‑94 (MQ=60)
                                                   GGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACA                                          <  SRR4302540.3627545/94‑1 (MQ=60)
                                                      TTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCC                                       >  SRR4302540.1959431/1‑94 (MQ=60)
                                                        CATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAG                                     >  SRR4302540.4120241/1‑94 (MQ=60)
                                                        CATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAG                                     <  SRR4302540.7957834/94‑1 (MQ=60)
                                                        CATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAG                                     <  SRR4302540.6885906/94‑1 (MQ=60)
                                                         ATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGC                                    >  SRR4302540.10005090/1‑94 (MQ=60)
                                                         ATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGC                                    >  SRR4302540.1194437/1‑94 (MQ=60)
                                                         ATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGC                                    <  SRR4302540.4154765/94‑1 (MQ=60)
                                                         ATCCAGTAAACGATAGTCGCGATGGTCACCAGTCTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGC                                    <  SRR4302540.2232078/94‑1 (MQ=60)
                                                          TCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCC                                   <  SRR4302540.10032868/94‑1 (MQ=60)
                                                          TCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCC                                   >  SRR4302540.5665609/1‑94 (MQ=60)
                                                          TCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCC                                   <  SRR4302540.7092135/94‑1 (MQ=60)
                                                           CCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCG                                  >  SRR4302540.601131/1‑94 (MQ=60)
                                                            CAGCAAACGATAGCGGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGC                                 <  SRR4302540.3143534/94‑1 (MQ=60)
                                                              GTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAC                               <  SRR4302540.4145002/94‑1 (MQ=60)
                                                              GTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAC                               >  SRR4302540.5863839/1‑94 (MQ=60)
                                                               TAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTCGCCACGGAAGACTTTATCCGACATCCAGCGGCACA                              >  SRR4302540.3883555/1‑94 (MQ=60)
                                                                AAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAG                             <  SRR4302540.6392170/94‑1 (MQ=60)
                                                                 AACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGACGACTTTATCCGACACCCAGCCCCACAGA                            >  SRR4302540.8038382/1‑94 (MQ=60)
                                                                 AACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGC                            >  SRR4302540.8038381/1‑94 (MQ=60)
                                                                  ACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCA                           <  SRR4302540.5312830/94‑1 (MQ=60)
                                                                   CGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAG                          <  SRR4302540.1974586/94‑1 (MQ=60)
                                                                    GATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGA                         <  SRR4302540.10012027/94‑1 (MQ=60)
                                                                     ATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAG                        <  SRR4302540.102786/94‑1 (MQ=60)
                                                                      TAGTCGCGATTGTCACCAGTGACATAGAGAAATCGCCGGTCGCCCCGCGGGTGCCTCGGAAGACTTTATCCGACGTCCAGCCGCACAGCAGAGT                       <  SRR4302540.8290928/94‑1 (MQ=53)
                                                                      TAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGT                       <  SRR4302540.4105218/94‑1 (MQ=60)
                                                                      TAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGT                       <  SRR4302540.2888024/94‑1 (MQ=60)
                                                                      TAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGT                       <  SRR4302540.3070765/94‑1 (MQ=60)
                                                                      TAGGCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGT                       <  SRR4302540.4105217/94‑1 (MQ=60)
                                                                        GTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGC                     >  SRR4302540.46747/1‑94 (MQ=60)
                                                                        GTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGC                     >  SRR4302540.4430999/1‑94 (MQ=60)
                                                                        GTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGC                     <  SRR4302540.5785504/94‑1 (MQ=60)
                                                                           GCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCG                  <  SRR4302540.3036535/94‑1 (MQ=60)
                                                                           GCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCG                  <  SRR4302540.324956/94‑1 (MQ=60)
                                                                            CGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGG                 >  SRR4302540.2896253/1‑94 (MQ=60)
                                                                              ATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAA               >  SRR4302540.7694809/1‑94 (MQ=60)
                                                                               TGGTCACCAGTGCCATAAAGAAATCGCCGGTTGCCCCACGGTTGCCACGGAAGCCTTTATCAGACATCCAGCCGCACAGCAGAGTGCCCGGAAT              <  SRR4302540.4193096/94‑1 (MQ=60)
                                                                               TGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAAT              <  SRR4302540.2825059/94‑1 (MQ=60)
                                                                               TGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAAT              <  SRR4302540.37213/94‑1 (MQ=60)
                                                                                GGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATA             >  SRR4302540.7423782/1‑94 (MQ=60)
                                                                                GGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATA             >  SRR4302540.10029593/1‑94 (MQ=60)
                                                                                  TCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCCGCCGCACAGCAGAGTGCCCGGAATACC           >  SRR4302540.689486/1‑94 (MQ=60)
                                                                                   CACCAGTGTCATAAAGAAAACTCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACAGCCAGCCGCACAGCAGAGTGCCCGGAATACCT          <  SRR4302540.4335427/94‑1 (MQ=60)
                                                                                   CACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCT          >  SRR4302540.10023666/1‑94 (MQ=60)
                                                                                    ACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTG         <  SRR4302540.5147491/94‑1 (MQ=60)
                                                                                    ACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTG         <  SRR4302540.884232/94‑1 (MQ=60)
                                                                                       AGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT      >  SRR4302540.4106521/1‑94 (MQ=60)
                                                                                       AGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT      >  SRR4302540.5317364/1‑94 (MQ=60)
                                                                                        GTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATA     >  SRR4302540.6314702/1‑94 (MQ=60)
                                                                                          GCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATT   >  SRR4302540.5916077/1‑94 (MQ=60)
                                                                                           TCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATTC  <  SRR4302540.7342805/94‑1 (MQ=60)
                                                                                           |                                                                                             
AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATTC  >  NC_000913/2349316‑2349500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑