Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,349,407 T→C T330A (ACA→GCA)  glpT ← sn‑glycerol‑3‑phosphate permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,349,4070TC100.0% 716.9 / NA 219T330A (ACA→GCA) glpTsn‑glycerol‑3‑phosphate permease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (115/104);  total (115/104)

Only 100 of 226 total aligned reads displayed.

GGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT  >  NC_000913/2349317‑2349496
                                                                                          |                                                                                         
ggAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCa                                                                                         >  1:2954954/1‑93 (MQ=255)
ggAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCa                                                                                         >  2:3197333/1‑93 (MQ=255)
   aGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATaa                                                                                      <  1:5818093/93‑1 (MQ=255)
    gCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTACCATaaa                                                                                     >  2:1921626/1‑93 (MQ=255)
     ccGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAg                                                                                    <  2:2301366/93‑1 (MQ=255)
      cGATAACAATCATACAAATCATATCGACGGTTGGGTTACTTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGa                                                                                   >  1:5998239/1‑93 (MQ=255)
      cGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGa                                                                                   >  2:5450759/1‑93 (MQ=255)
      cGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGa                                                                                   >  1:4469192/1‑93 (MQ=255)
       gATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGaa                                                                                  <  2:1763651/93‑1 (MQ=255)
       gATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGaa                                                                                  >  2:1576523/1‑93 (MQ=255)
        aTAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGaaa                                                                                 >  1:4220537/1‑93 (MQ=255)
        aTAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGaaa                                                                                 <  1:2202797/93‑1 (MQ=255)
        aTAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGaaa                                                                                 <  1:4476787/93‑1 (MQ=255)
              aTCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCg                                                                           <  1:2938909/93‑1 (MQ=255)
              aTCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCg                                                                           <  2:2906727/93‑1 (MQ=255)
                 aTACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGtt                                                                        >  2:4380696/1‑93 (MQ=255)
                 aTACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGtt                                                                        >  1:3422357/1‑93 (MQ=255)
                 aTACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGtt                                                                        <  2:4053547/93‑1 (MQ=255)
                 aTACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGtt                                                                        <  1:5310955/93‑1 (MQ=255)
                   aCAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGc                                                                      >  2:5503216/1‑93 (MQ=255)
                   aCAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGc                                                                      <  1:3559721/93‑1 (MQ=255)
                      aaTCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGcccc                                                                   <  2:286606/93‑1 (MQ=255)
                      aaTCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTACCATAAAGAAAACGCCGGTTGcccc                                                                   >  1:1824109/1‑93 (MQ=255)
                        tCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCAc                                                                 >  2:5982064/1‑93 (MQ=255)
                        tCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCAc                                                                 >  2:5231682/1‑93 (MQ=255)
                         cATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACg                                                                <  1:87445/93‑1 (MQ=255)
                         cATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACg                                                                <  2:1038999/93‑1 (MQ=255)
                         cATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACg                                                                <  1:4674453/93‑1 (MQ=255)
                          atatCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACgg                                                               >  2:379226/1‑93 (MQ=255)
                          atatCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACgg                                                               >  2:6277790/1‑93 (MQ=255)
                           tatCGACGGTTGGTTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGt                                                              <  1:1180911/93‑1 (MQ=255)
                            atCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGtt                                                             <  1:4534726/93‑1 (MQ=255)
                            atCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGtt                                                             >  2:3604945/1‑93 (MQ=255)
                             tCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTg                                                            >  1:3770148/1‑93 (MQ=255)
                                aCGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCa                                                         <  2:715634/93‑1 (MQ=255)
                                aCGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCa                                                         <  1:3246469/93‑1 (MQ=255)
                                aCGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCa                                                         <  1:5755463/93‑1 (MQ=255)
                                 cGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAc                                                        >  2:50143/1‑93 (MQ=255)
                                  ggTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACg                                                       <  1:6181923/93‑1 (MQ=255)
                                  ggTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACg                                                       >  1:4818913/1‑93 (MQ=255)
                                   gTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACgg                                                      >  2:2767692/1‑93 (MQ=255)
                                   gTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGGTGCCGCgg                                                      >  2:5888907/1‑93 (MQ=255)
                                     tGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGaa                                                    >  2:4132978/1‑93 (MQ=255)
                                      gggTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAg                                                   <  2:4926384/93‑1 (MQ=255)
                                      gggTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAg                                                   >  2:3408018/1‑93 (MQ=255)
                                       ggTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGa                                                  <  2:4609202/93‑1 (MQ=255)
                                       ggTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGa                                                  >  2:4100793/1‑93 (MQ=255)
                                       ggTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGa                                                  <  1:3086189/93‑1 (MQ=255)
                                          tACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACtt                                               <  1:2628573/93‑1 (MQ=255)
                                           aCCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACttt                                              >  2:6184985/1‑93 (MQ=255)
                                            ccTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTa                                             >  1:732056/1‑93 (MQ=255)
                                            ccTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTa                                             <  1:1000722/93‑1 (MQ=255)
                                             cTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAt                                            >  1:812446/1‑93 (MQ=255)
                                             cTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAt                                            >  2:3442923/1‑93 (MQ=255)
                                              tGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATc                                           >  2:476756/1‑93 (MQ=255)
                                               tccGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAACAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATcc                                          <  1:4441148/92‑1 (MQ=255)
                                               gCCGTGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATcc                                          >  2:2494205/1‑93 (MQ=255)
                                               gCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATcc                                          >  2:5068409/1‑93 (MQ=255)
                                                ccGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCg                                         >  2:3756866/1‑93 (MQ=255)
                                                 cGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGa                                        >  2:894136/1‑93 (MQ=255)
                                                  gggTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAc                                       >  1:4987733/1‑93 (MQ=255)
                                                  gggTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAc                                       >  1:3473346/1‑93 (MQ=255)
                                                  gggTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAG‑AAACGCCGGTTGGCCCACGGTTGCCACGGAAGACTTTATCCGACa                                      >  2:1826435/1‑93 (MQ=255)
                                                     ttCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATc                                    <  2:4652241/93‑1 (MQ=255)
                                                     ttCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATc                                    >  1:5527433/1‑93 (MQ=255)
                                                     ttCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATc                                    <  1:691686/93‑1 (MQ=255)
                                                      tCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATcc                                   <  2:2112671/93‑1 (MQ=255)
                                                      tCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATcc                                   >  1:2069543/1‑93 (MQ=255)
                                                         tCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGc                                <  2:2719713/93‑1 (MQ=255)
                                                          ccAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGcc                               <  2:1976286/93‑1 (MQ=255)
                                                              tAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGcac                           >  2:2697070/1‑93 (MQ=255)
                                                              tAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGcac                           >  1:3539329/1‑93 (MQ=255)
                                                                aaCGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAcag                         <  2:294945/93‑1 (MQ=255)
                                                                aaCGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAcag                         <  2:2228974/93‑1 (MQ=255)
                                                                aaCGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAcag                         <  1:1243585/93‑1 (MQ=255)
                                                                  cGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAcagca                       >  1:2732066/1‑93 (MQ=255)
                                                                    aTAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCaga                     >  2:4955541/1‑93 (MQ=255)
                                                                     tAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCagag                    <  1:4870398/93‑1 (MQ=255)
                                                                     tAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCagag                    <  1:1511796/93‑1 (MQ=255)
                                                                     tAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCagag                    <  2:4122703/93‑1 (MQ=255)
                                                                     tAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCagag                    >  1:5406928/1‑93 (MQ=255)
                                                                      aGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGt                   <  1:4169938/93‑1 (MQ=255)
                                                                       gTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTg                  <  1:1624814/93‑1 (MQ=255)
                                                                       gTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTg                  <  1:1918095/93‑1 (MQ=255)
                                                                         cgcgATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGcc                <  2:1490098/93‑1 (MQ=255)
                                                                          gcgATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGccc               >  2:3025453/1‑93 (MQ=255)
                                                                           cgATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCg              >  1:4762538/1‑93 (MQ=255)
                                                                           cgATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCg              >  2:2331261/1‑93 (MQ=255)
                                                                             aTGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGa            >  1:5120687/1‑93 (MQ=255)
                                                                             aTGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGa            >  1:2141746/1‑93 (MQ=255)
                                                                             aTGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGa            >  2:1620969/1‑93 (MQ=255)
                                                                               ggTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAAt          >  1:1366357/1‑93 (MQ=255)
                                                                                 tCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATAc        >  2:5783605/1‑93 (MQ=255)
                                                                                 tCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATAc        >  1:4324263/1‑93 (MQ=255)
                                                                                 tCACCACTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATAc        >  2:2135248/1‑93 (MQ=255)
                                                                                  cACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATAcc       <  1:4010988/93‑1 (MQ=255)
                                                                                  cACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATAcc       <  1:1580230/93‑1 (MQ=255)
                                                                                    cgaGTGCCATAAAGAAAACTCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCGGAGTGCCCGGAATACCTg     <  2:4517044/91‑1 (MQ=255)
                                                                                    ccAGTGCCATNAAGAAAACGCCGGNTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTg     <  2:1674314/93‑1 (MQ=255)
                                                                                      aGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCa   <  1:5171210/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT  >  NC_000913/2349317‑2349496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATTC  >  NC_000913/2349315‑2349500
                                                                                            |                                                                                             
CAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCC                                                                                              >  SRR4302533.4131373/1‑94 (MQ=60)
 AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCA                                                                                             >  SRR4302533.2973023/1‑94 (MQ=60)
     AGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAA                                                                                         <  SRR4302533.5853239/94‑1 (MQ=60)
       CCGATAACAATCATACAAATCATATCGACGGTTGGGTTACTTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGA                                                                                       >  SRR4302533.6034566/1‑94 (MQ=60)
       CCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGA                                                                                       >  SRR4302533.4496223/1‑94 (MQ=60)
       CCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGA                                                                                       >  SRR4302533.2125703/1‑94 (MQ=60)
         GATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAA                                                                                     >  SRR4302533.4246060/1‑94 (MQ=60)
          ATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAA                                                                                    <  SRR4302533.4503867/94‑1 (MQ=60)
          ATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAA                                                                                    <  SRR4302533.2216374/94‑1 (MQ=60)
            AACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACG                                                                                  <  SRR4302533.1495723/94‑1 (MQ=60)
            AACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACG                                                                                  >  SRR4302533.564954/1‑94 (MQ=60)
              CAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCC                                                                                >  SRR4302533.436856/1‑94 (MQ=60)
              CAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGCTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCC                                                                                >  SRR4302533.3209407/1‑94 (MQ=60)
               AATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCG                                                                               <  SRR4302533.3515958/94‑1 (MQ=60)
               AATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCG                                                                               <  SRR4302533.2645209/94‑1 (MQ=60)
               AATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAAAGCCG                                                                               >  SRR4302533.4341171/1‑94 (MQ=60)
                ATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGG                                                                              <  SRR4302533.2956866/94‑1 (MQ=60)
                ATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGG                                                                              >  SRR4302533.844765/1‑94 (MQ=60)
                ATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGG                                                                              >  SRR4302533.8980/1‑94 (MQ=60)
                  CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTT                                                                            <  SRR4302533.4922187/94‑1 (MQ=60)
                  CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTT                                                                            >  SRR4302533.3443497/1‑94 (MQ=60)
                  CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTT                                                                            >  SRR4302533.75653/1‑94 (MQ=60)
                   ATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTG                                                                           <  SRR4302533.486288/94‑1 (MQ=60)
                   ATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTG                                                                           <  SRR4302533.5342782/94‑1 (MQ=60)
                    TACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGC                                                                          <  SRR4302533.4567919/94‑1 (MQ=60)
                    TACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGC                                                                          >  SRR4302533.3968552/1‑94 (MQ=60)
                    TACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGC                                                                          >  SRR4302533.5392807/1‑94 (MQ=60)
                     ACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCC                                                                         <  SRR4302533.3581654/94‑1 (MQ=60)
                       AAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTACCATAAAGAAAACGCCGGTTGCCCC                                                                       >  SRR4302533.1835254/1‑94 (MQ=60)
                         ATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCAC                                                                     <  SRR4302533.3696936/94‑1 (MQ=60)
                          TCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACG                                                                    <  SRR4302533.4540898/94‑1 (MQ=60)
                          TCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACG                                                                    >  SRR4302533.112440/1‑94 (MQ=60)
                          ACATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACG                                                                    <  SRR4302533.4155735/94‑1 (MQ=60)
                           CATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGG                                                                   <  SRR4302533.88004/94‑1 (MQ=60)
                           CATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGG                                                                   <  SRR4302533.4702776/94‑1 (MQ=60)
                             TATCGACGGTTGGTTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTT                                                                 <  SRR4302533.1188004/94‑1 (MQ=60)
                             TATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTT                                                                 <  SRR4302533.5114257/94‑1 (MQ=60)
                              ATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTG                                                                >  SRR4302533.3793261/1‑94 (MQ=60)
                              ATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTG                                                                <  SRR4302533.4562185/94‑1 (MQ=60)
                                  ACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC                                                            <  SRR4302533.3266485/94‑1 (MQ=60)
                                  ACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC                                                            >  SRR4302533.5909686/1‑94 (MQ=60)
                                  ACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC                                                            <  SRR4302533.5790191/94‑1 (MQ=60)
                                   CGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACG                                                           >  SRR4302533.4848119/1‑94 (MQ=60)
                                    GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG                                                          >  SRR4302533.437871/1‑94 (MQ=60)
                                    GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG                                                          <  SRR4302533.6219044/94‑1 (MQ=60)
                                    GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG                                                          <  SRR4302533.5431258/94‑1 (MQ=60)
                                       TGGGTTACCCGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAG                                                       >  SRR4302533.1472965/1‑94 (MQ=60)
                                        GGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGA                                                      <  SRR4302533.4245403/94‑1 (MQ=60)
                                        GGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGA                                                      <  SRR4302533.687753/94‑1 (MQ=60)
                                         GGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGAC                                                     <  SRR4302533.3105161/94‑1 (MQ=60)
                                         GGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGAC                                                     >  SRR4302533.3043508/1‑94 (MQ=60)
                                           TTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTT                                                   >  SRR4302533.4502601/1‑94 (MQ=60)
                                            TACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTT                                                  <  SRR4302533.2644724/94‑1 (MQ=60)
                                             ACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTA                                                 >  SRR4302533.736364/1‑94 (MQ=60)
                                              CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                <  SRR4302533.1006564/94‑1 (MQ=60)
                                              CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                >  SRR4302533.817205/1‑94 (MQ=60)
                                              CCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTAT                                                <  SRR4302533.3473158/94‑1 (MQ=60)
                                                 TCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAACAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCG                                             <  SRR4302533.4467999/94‑1 (MQ=60)
                                                   CGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAC                                           >  SRR4302533.5017976/1‑94 (MQ=60)
                                                   CGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAC                                           >  SRR4302533.3494778/1‑94 (MQ=60)
                                                   CGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAC                                           >  SRR4302533.2209306/1‑94 (MQ=60)
                                                   CGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGAC                                           >  SRR4302533.1654932/1‑94 (MQ=60)
                                                    GGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACA                                          >  SRR4302533.5494454/1‑94 (MQ=60)
                                                     GGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACAT                                         >  SRR4302533.2959128/1‑94 (MQ=60)
                                                     GGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACAT                                         <  SRR4302533.1919587/94‑1 (MQ=60)
                                                      GTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATC                                        >  SRR4302533.5560803/1‑94 (MQ=60)
                                                       TTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCC                                       >  SRR4302533.2082288/1‑94 (MQ=60)
                                                       TTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCC                                       <  SRR4302533.1594343/94‑1 (MQ=60)
                                                       TTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCC                                       <  SRR4302533.695773/94‑1 (MQ=60)
                                                          ATCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGC                                    >  SRR4302533.2536498/1‑94 (MQ=60)
                                                           TCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCC                                   <  SRR4302533.80448/94‑1 (MQ=60)
                                                           TCCAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCC                                   >  SRR4302533.299047/1‑94 (MQ=60)
                                                             CAGTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGC                                 >  SRR4302533.4674757/1‑94 (MQ=60)
                                                               GTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAC                               <  SRR4302533.2800587/94‑1 (MQ=60)
                                                               GTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAC                               >  SRR4302533.3561139/1‑94 (MQ=60)
                                                               GTAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCAC                               >  SRR4302533.3561138/1‑94 (MQ=60)
                                                                TAAACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACA                              >  SRR4302533.5983300/1‑94 (MQ=60)
                                                                  AACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGC                            <  SRR4302533.1251012/94‑1 (MQ=60)
                                                                   ACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCA                           <  SRR4302533.5832412/94‑1 (MQ=60)
                                                                   ACGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCA                           >  SRR4302533.2748830/1‑94 (MQ=60)
                                                                    CGATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAG                          >  SRR4302533.4170997/1‑94 (MQ=60)
                                                                      ATAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAG                        >  SRR4302533.5439419/1‑94 (MQ=60)
                                                                       TAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGT                       <  SRR4302533.4899913/94‑1 (MQ=60)
                                                                       TAGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGT                       <  SRR4302533.1520907/94‑1 (MQ=60)
                                                                        AGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTG                      <  SRR4302533.4195205/94‑1 (MQ=60)
                                                                        AGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTG                      <  SRR4302533.5183729/94‑1 (MQ=60)
                                                                        AGTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTG                      <  SRR4302533.4739946/94‑1 (MQ=60)
                                                                         GTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGC                     <  SRR4302533.4981370/94‑1 (MQ=60)
                                                                         GTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGC                     <  SRR4302533.1929804/94‑1 (MQ=60)
                                                                         GTCGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGC                     <  SRR4302533.1634654/94‑1 (MQ=60)
                                                                           CGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCC                   <  SRR4302533.3498261/94‑1 (MQ=60)
                                                                           CGCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCC                   <  SRR4302533.4842750/94‑1 (MQ=60)
                                                                            GCGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCG                  >  SRR4302533.4791423/1‑94 (MQ=60)
                                                                             CGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGG                 >  SRR4302533.6196132/1‑94 (MQ=60)
                                                                             CGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGG                 <  SRR4302533.3438781/94‑1 (MQ=60)
                                                                             CGATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGG                 >  SRR4302533.1298430/1‑94 (MQ=60)
                                                                              GATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGA                >  SRR4302533.5151624/1‑94 (MQ=60)
                                                                              GATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGA                >  SRR4302533.2154944/1‑94 (MQ=60)
                                                                               ATGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAA               >  SRR4302533.5262454/1‑94 (MQ=60)
                                                                                TGGTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAAT              >  SRR4302533.1374572/1‑94 (MQ=60)
                                                                                  GTCACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATAC            >  SRR4302533.4350303/1‑94 (MQ=60)
                                                                                    CACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCT          <  SRR4302533.4035408/94‑1 (MQ=60)
                                                                                    CACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCT          <  SRR4302533.1589748/94‑1 (MQ=60)
                                                                                    CACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCT          >  SRR4302533.699133/1‑94 (MQ=60)
                                                                                     ACCAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTG         <  SRR4302533.2631536/94‑1 (MQ=60)
                                                                                     ACCAGTACCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTG         <  SRR4302533.1933355/94‑1 (MQ=60)
                                                                                       CAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCA       >  SRR4302533.1560844/1‑94 (MQ=60)
                                                                                       CAGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCA       <  SRR4302533.1864256/94‑1 (MQ=60)
                                                                                        AGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT      >  SRR4302533.4476788/1‑94 (MQ=60)
                                                                                        AGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT      >  SRR4302533.1196250/1‑94 (MQ=60)
                                                                                        AGTGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCAT      <  SRR4302533.5202417/94‑1 (MQ=60)
                                                                                          TGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATAT    <  SRR4302533.2528299/94‑1 (MQ=60)
                                                                                          TGCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATACGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATAT    >  SRR4302533.2422086/1‑94 (MQ=60)
                                                                                           GCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATT   >  SRR4302533.837462/1‑94 (MQ=60)
                                                                                           GCCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATT   >  SRR4302533.3848920/1‑94 (MQ=60)
                                                                                            CCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATTC  <  SRR4302533.612442/94‑1 (MQ=60)
                                                                                            |                                                                                             
CAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATAGTCGCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCACAGCAGAGTGCCCGGAATACCTGCATATTC  >  NC_000913/2349315‑2349500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑