Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	245	579.6	28867798	97.7%	28203838	96.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,041,671	(T)_6→7	intergenic (+46/‑108)	dsbA → / → b3861	protein disulfide isomerase I/putative GTP‑binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,041,665	1	.	T	98.6%	831.5 / 3.1	207	intergenic (+40/‑114)	dsbA/b3861	protein disulfide isomerase I/putative GTP‑binding protein
Reads supporting (aligned to +/- strand): ref base . (2/1); new base T (84/120); total (86/121)
Fisher's exact test for biased strand distribution p-value = 5.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01

Only 100 of 258 total aligned reads displayed.

ATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGGC‑T‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTG  >  NC_000913/4041570‑4041755

aTGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGc                                                                                               <  1:13105316/96‑1 (MQ=255)

 tGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t                                                                                             <  1:1637618/96‑1 (MQ=255)

  gTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑t                                                                                           <  1:3533703/96‑1 (MQ=255)

  gTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑t                                                                                           <  1:6313978/96‑1 (MQ=255)

  gTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑t                                                                                           <  2:5622952/96‑1 (MQ=255)

   tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt                                                                                          <  1:10920050/96‑1 (MQ=255)

   tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt                                                                                          <  2:7304132/96‑1 (MQ=255)

   tttttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt                                                                                          <  2:2718973/96‑1 (MQ=255)

   tatttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt                                                                                          <  1:12875466/94‑1 (MQ=255)

     tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑tt                                                                                       >  2:14016470/1‑96 (MQ=255)

      ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑ttt                                                                                      <  2:7155756/96‑1 (MQ=255)

      ttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑ttt                                                                                      <  2:3951984/96‑1 (MQ=255)

       tGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑tttt                                                                                     <  2:357956/96‑2 (MQ=255)

       tGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑tttt                                                                                     <  1:485253/96‑2 (MQ=255)

        gTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑tttta                                                                                    >  2:10056459/1‑94 (MQ=255)

         ttCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑ttttat                                                                                   <  1:1058287/96‑4 (MQ=255)

          tCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGC‑t‑tt‑ttttatt                                                                                  >  2:7605924/1‑92 (MQ=255)

            agcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTtattat                                                                                 >  2:8042103/1‑96 (MQ=255)

            agcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTtattat                                                                                 >  2:8352201/1‑96 (MQ=255)

             gcagTATGCTTATACAGTGAAATATCTGTCCTAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTattatt                                                                                <  2:7557124/96‑1 (MQ=255)

               agTATGCTGGTACAGTGAAATAGCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTta                                                                              >  1:1963329/1‑96 (MQ=255)

                 tATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTtaat                                                                            <  1:8359550/96‑1 (MQ=255)

                 tATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATGACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTtaat                                                                            <  2:2832912/96‑1 (MQ=255)

                  aTGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTtaata                                                                           <  2:8757800/96‑1 (MQ=255)

                  aTGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTtaata                                                                           >  2:3235747/1‑96 (MQ=255)

                    gCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTaataaa                                                                         <  1:5112156/96‑1 (MQ=255)

                    gCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTaataaa                                                                         <  2:6239603/96‑1 (MQ=255)

                    gCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTaataaa                                                                         >  1:3046463/1‑96 (MQ=255)

                      tGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTaataaata                                                                       <  1:1446309/96‑1 (MQ=255)

                      tGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTaataaata                                                                       <  1:5292535/96‑1 (MQ=255)

                       gATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatat                                                                      <  1:6609182/96‑1 (MQ=255)

                        agaCAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatata                                                                     >  1:7540414/3‑96 (MQ=255)

                        aTACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatata                                                                     <  1:12457461/96‑1 (MQ=255)

                        aTACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatata                                                                     >  1:12111215/1‑96 (MQ=255)

                         tACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatataa                                                                    <  2:12523644/96‑1 (MQ=255)

                         tACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatataa                                                                    <  2:6690719/96‑1 (MQ=255)

                           cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatataaat                                                                  <  1:5841204/96‑1 (MQ=255)

                           cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAataaatataaat                                                                  <  2:11294831/96‑1 (MQ=255)

                           cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAAGATTCACGGGC‑TGTT‑TTTATTATTTAataaatataaat                                                                  >  1:4014125/1‑96 (MQ=255)

                            aGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAAtaaatataaata                                                                 >  1:5406927/1‑96 (MQ=255)

                            aGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAAtaaatataaata                                                                 >  1:4337361/1‑96 (MQ=255)

                            aGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAAtaaatataaata                                                                 <  1:9737265/96‑1 (MQ=255)

                            aGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAAtaaatataaata                                                                 <  1:13723381/96‑1 (MQ=255)

                             gTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATAc                                                                <  2:1181423/96‑1 (MQ=255)

                             gTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATAc                                                                >  1:7386988/1‑96 (MQ=255)

                              tGAAAGATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACa                                                               <  1:2444093/96‑1 (MQ=255)

                                aaaTATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACAtt                                                             >  2:9470502/1‑96 (MQ=255)

                                  atatCTGTCCCAAAAAAAATAAATCAATGTAAATTACATAAAGCCCGTGAATATTCCCGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCt                                                           <  2:5473761/96‑1 (MQ=255)

                                   tatCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTg                                                          <  2:4903941/96‑1 (MQ=255)

                                    atCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGa                                                         >  2:11753874/1‑96 (MQ=255)

                                     tttGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGAt                                                        >  1:10302908/3‑96 (MQ=255)

                                     tCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCCCGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGAt                                                        <  2:6312720/96‑1 (MQ=255)

                                      cTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATa                                                       <  1:14016470/96‑1 (MQ=255)

                                      cTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATa                                                       <  1:8099027/96‑1 (MQ=255)

                                      cTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATa                                                       <  1:10911857/96‑1 (MQ=255)

                                        gTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAAt                                                     >  1:3755559/1‑96 (MQ=255)

                                         tCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATg                                                    >  1:1705779/1‑96 (MQ=255)

                                         tCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATg                                                    <  1:1228612/96‑1 (MQ=255)

                                         tCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATg                                                    <  2:10617945/96‑1 (MQ=255)

                                           cGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCTCGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCa                                                  <  2:12251916/96‑1 (MQ=255)

                                           cGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCa                                                  >  2:9176127/1‑96 (MQ=255)

                                              gaAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATcc                                               <  1:9248734/96‑1 (MQ=255)

                                               aaaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCt                                              <  1:9991677/96‑1 (MQ=255)

                                               aaaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCt                                              <  2:1885899/96‑1 (MQ=255)

                                                aaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTg                                             <  2:11139173/96‑1 (MQ=255)

                                                aaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTg                                             >  1:3354103/1‑96 (MQ=255)

                                                aaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTg                                             <  2:9096141/96‑1 (MQ=255)

                                                  aaaTAATTCAATGTAAATTACATAAATCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGcc                                           <  2:13274111/96‑1 (MQ=255)

                                                  aaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGcc                                           <  2:12192136/96‑1 (MQ=255)

                                                    ataatTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGc                                         >  2:4618107/1‑96 (MQ=255)

                                                      aatTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTg                                       <  2:14223099/96‑1 (MQ=255)

                                                      aatTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTg                                       >  1:11905076/1‑96 (MQ=255)

                                                      aatTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTg                                       <  1:295926/96‑1 (MQ=255)

                                                        ttCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGa                                     <  2:4357733/96‑1 (MQ=255)

                                                          cAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGAcc                                   <  1:1594457/96‑2 (MQ=255)

                                                          cAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACa                                   <  1:14212426/96‑1 (MQ=255)

                                                           aaTGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACat                                  <  2:13725719/96‑1 (MQ=255)

                                                            aTGTAAATTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACatt                                 <  2:14312395/96‑1 (MQ=255)

                                                                 aaTTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTc                            <  1:1221252/96‑1 (MQ=255)

                                                                 aaTTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTc                            >  2:653988/1‑96 (MQ=255)

                                                                 aaTTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTc                            <  2:2415837/96‑1 (MQ=255)

                                                                  aTTACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCa                           >  2:8510233/1‑96 (MQ=255)

                                                                    tACATAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGc                         <  2:1284566/96‑1 (MQ=255)

                                                                       aTAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATa                      <  1:6807601/96‑1 (MQ=255)

                                                                        tAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCAtta                     <  1:10811234/96‑3 (MQ=255)

                                                                        tAAAGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATaa                     >  2:11563176/1‑96 (MQ=255)

                                                                          aaGCCCGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGt                   <  2:6141730/96‑1 (MQ=255)

                                                                             cccGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGa                >  2:1083111/1‑96 (MQ=255)

                                                                             cccGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGa                <  2:2983796/96‑1 (MQ=255)

                                                                              ccGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGat               >  1:9414898/1‑96 (MQ=255)

                                                                              ccGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGat               >  2:2309139/1‑96 (MQ=255)

                                                                               cGTGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGata              <  1:2232905/96‑1 (MQ=255)

                                                                                gTGAATATTCACGGGC‑T‑TTGTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGatat             <  1:11602107/96‑1 (MQ=255)

                                                                                 tGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGatagt            >  1:10409035/1‑94 (MQ=255)

                                                                                 tGAATATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATAtt            >  1:9652785/1‑96 (MQ=255)

                                                                                    atATTCACGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCaa         >  2:3888615/2‑96 (MQ=255)

                                                                                          aCGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGtttt   >  1:6976017/1‑96 (MQ=255)

                                                                                          aCGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGtttt   <  2:6911204/96‑1 (MQ=255)

                                                                                           cGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTg  >  1:4551353/1‑96 (MQ=255)

                                                                                           cGGGCTT‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTg  <  1:13818957/96‑1 (MQ=255)

ATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGGC‑T‑TT‑TTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTG  >  NC_000913/4041570‑4041755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGG‑C‑T‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAA  >  NC_000913/4041572‑4041771

caTTTTGTTCAGCAGTATGCTGATACCGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACCTAAAGCCCGTGAATATTCCCGGG‑C‑T‑TT‑T‑TTT                                                                                                     <  SRR4302518.1768917/99‑1 (MQ=60)

GTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTT                                                                                                     <  SRR4302518.504377/101‑1 (MQ=60)

 NNNTTGTTCAGCAGTATGCTGAGACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTta                                                                                                    <  SRR4302518.13249278/101‑3 (MQ=60)

  TTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTtat                                                                                                   <  SRR4302518.2811751/101‑4 (MQ=60)

  TTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTtat                                                                                                   >  SRR4302518.3588999/1‑98 (MQ=60)

  TTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTtat                                                                                                   <  SRR4302518.1099963/101‑4 (MQ=60)

  NNNTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTtat                                                                                                   <  SRR4302518.8677197/101‑4 (MQ=60)

    TTGTTCAGCAGTATGCTTATACATTGAAATATCTGTCAGAGAAAATATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTA                                                                                                  <  SRR4302518.581925/101‑1 (MQ=60)

    NNNTTCAGCAGTATGCTGATACAATGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGCG‑C‑T‑TT‑T‑T‑‑TTATTT                                                                                               <  SRR4302518.11943087/101‑1 (MQ=60)

     TGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTtatnnn                                                                                                >  SRR4302518.8690764/1‑95 (MQ=60)

      GTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATT                                                                                                >  SRR4302518.5679364/1‑101 (MQ=60)

      GTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑C‑T‑TT‑T‑TTtattnnn                                                                                               >  SRR4302518.14354170/1‑94 (MQ=60)

       TTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTT                                                                                               <  SRR4302518.6953564/101‑1 (MQ=60)

        TCAGCAGTATGCTGATACAGTGAAATATCTTTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTA                                                                                              <  SRR4302518.6330794/101‑1 (MQ=60)

        TCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTA                                                                                              >  SRR4302518.3124057/1‑101 (MQ=60)

        NNNGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTA                                                                                              <  SRR4302518.10151870/101‑1 (MQ=60)

          NNNAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAAT                                                                                            <  SRR4302518.8770089/101‑1 (MQ=60)

            NNNTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAA                                                                                          <  SRR4302518.12486357/101‑1 (MQ=60)

            CAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAA                                                                                          <  SRR4302518.4499935/101‑1 (MQ=60)

             NNNATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATACA                                                                                         <  SRR4302518.11659368/101‑1 (MQ=60)

             AGTATGCTGGTACAGTGAAATAGCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAA                                                                                         >  SRR4302518.2053064/1‑101 (MQ=60)

             AGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAA                                                                                         >  SRR4302518.4840880/1‑101 (MQ=60)

             AGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAA                                                                                         <  SRR4302518.5376519/101‑1 (MQ=60)

               TATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATA                                                                                       <  SRR4302518.1507069/101‑1 (MQ=60)

               TATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATA                                                                                       <  SRR4302518.5564245/101‑1 (MQ=60)

               NNNGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATA                                                                                       <  SRR4302518.7638623/101‑1 (MQ=60)

                ATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATAT                                                                                      <  SRR4302518.6949636/101‑1 (MQ=60)

                 TGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATGAATNNN                                                                                     >  SRR4302518.10921018/1‑101 (MQ=60)

                 NNNTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATA                                                                                     <  SRR4302518.13043681/101‑1 (MQ=60)

                  NNNGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAA                                                                                    <  SRR4302518.10429892/101‑1 (MQ=60)

                  GCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAA                                                                                    >  SRR4302518.3189284/1‑101 (MQ=60)

                   CTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGTG‑C‑T‑TT‑TATTATTATTTAATAAATATNNN                                                                                   >  SRR4302518.10847786/1‑101 (MQ=60)

                    TGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAAT                                                                                  <  SRR4302518.6137119/101‑1 (MQ=60)

                    TGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAAT                                                                                  <  SRR4302518.4678285/101‑1 (MQ=60)

                    TGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAAT                                                                                  <  SRR4302518.5559866/101‑1 (MQ=60)

                    TGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATGACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAAT                                                                                  >  SRR4302518.3962923/1‑101 (MQ=60)

                    NNNTACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAAT                                                                                  <  SRR4302518.11356083/101‑1 (MQ=60)

                     NNNACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATA                                                                                 <  SRR4302518.14351740/101‑1 (MQ=60)

                     NNNACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATA                                                                                 <  SRR4302518.10205017/101‑1 (MQ=60)

                      ATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAANNN                                                                                >  SRR4302518.12686930/1‑101 (MQ=60)

                      AGACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAANNN                                                                                >  SRR4302518.7927196/1‑101 (MQ=60)

                       TACAGTGAAAGATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACA                                                                               <  SRR4302518.2562122/101‑1 (MQ=60)

                         CAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATT                                                                             <  SRR4302518.6407053/101‑1 (MQ=60)

                         CAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAAGATTCACGGG‑C‑TGTT‑T‑TTATTATTTAATAAATATAAATACATT                                                                             >  SRR4302518.4206568/1‑101 (MQ=60)

                          AGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTC                                                                            >  SRR4302518.4554276/1‑101 (MQ=60)

                          AGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTC                                                                            >  SRR4302518.5683156/1‑101 (MQ=60)

                          AGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTC                                                                            <  SRR4302518.2084361/101‑1 (MQ=60)

                          AGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTC                                                                            >  SRR4302518.2208135/1‑101 (MQ=60)

                           GTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATNNN                                                                           >  SRR4302518.7769510/1‑101 (MQ=60)

                            TGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTG                                                                          >  SRR4302518.6040871/1‑101 (MQ=60)

                               NNNATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATA                                                                       <  SRR4302518.11423344/101‑1 (MQ=60)

                               NNNATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATA                                                                       <  SRR4302518.14657894/101‑1 (MQ=60)

                               NNNATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATA                                                                       <  SRR4302518.8501400/101‑1 (MQ=60)

                               AATATCTGTCCGAGAAAAAATAATTCAATGTCAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGNNN                                                                       >  SRR4302518.12770341/1‑101 (MQ=60)

                                ATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGANNN                                                                      >  SRR4302518.11397786/1‑101 (MQ=60)

                                  NNNTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATG                                                                    <  SRR4302518.7907353/101‑1 (MQ=60)

                                  ATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATG                                                                    <  SRR4302518.1278539/101‑1 (MQ=60)

                                   TTTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAANNN                                                                   >  SRR4302518.10788649/1‑101 (MQ=60)

                                   TCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAANNN                                                                   >  SRR4302518.14842826/1‑101 (MQ=60)

                                     NNNCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCAT                                                                 <  SRR4302518.14619678/101‑1 (MQ=60)

                                      NNNCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATC                                                                <  SRR4302518.8380986/101‑1 (MQ=60)

                                      GTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATC                                                                >  SRR4302518.3932483/1‑101 (MQ=60)

                                       TCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCC                                                               >  SRR4302518.1781305/1‑101 (MQ=60)

                                       TCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCANNN                                                               >  SRR4302518.14584860/1‑101 (MQ=60)

                                       NNNGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCC                                                               <  SRR4302518.9694960/101‑1 (MQ=60)

                                        NNNAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCT                                                              <  SRR4302518.10466970/101‑1 (MQ=60)

                                        NNNAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCT                                                              <  SRR4302518.12061440/101‑1 (MQ=60)

                                        CCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCT                                                              <  SRR4302518.1529309/101‑1 (MQ=60)

                                         CGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTAGTTAATAAATATAAATACATTCTGATAATGCATCCTG                                                             >  SRR4302518.3770267/1‑101 (MQ=60)

                                          GAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGC                                                            <  SRR4302518.1577301/101‑1 (MQ=60)

                                           AGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCC                                                           >  SRR4302518.4973321/1‑101 (MQ=60)

                                            GAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGNNN                                                          >  SRR4302518.10281024/1‑101 (MQ=60)

                                             AAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCNNN                                                         >  SRR4302518.7608266/1‑101 (MQ=60)

                                              AAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCT                                                        >  SRR4302518.3510317/1‑101 (MQ=60)

                                               NNNATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTG                                                       <  SRR4302518.11426258/101‑1 (MQ=60)

                                               AAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTG                                                       <  SRR4302518.307911/101‑1 (MQ=60)

                                                 AATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTAATAATGCATCCTGCCGCTNNN                                                     >  SRR4302518.10976447/1‑101 (MQ=60)

                                                  ATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGAC                                                    >  SRR4302518.5713867/1‑101 (MQ=60)

                                                   TAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACC                                                   <  SRR4302518.1664005/101‑1 (MQ=60)

                                                   NNNTTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACA                                                   <  SRR4302518.13886971/101‑1 (MQ=60)

                                                   NNNTTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACA                                                   <  SRR4302518.14865685/101‑1 (MQ=60)

                                                    AATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGANNN                                                  >  SRR4302518.12471949/1‑101 (MQ=60)

                                                      TTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTA                                                >  SRR4302518.5537081/1‑101 (MQ=60)

                                                       TCAATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTAT                                               >  SRR4302518.7277881/1‑101 (MQ=60)

                                                         AATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTGTTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTT                                             >  SRR4302518.1691740/1‑101 (MQ=60)

                                                          ATGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTC                                            <  SRR4302518.1270771/101‑1 (MQ=60)

                                                          AGGTAAATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATNNN                                            >  SRR4302518.14933914/1‑101 (MQ=60)

                                                                NNNACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATA                                      <  SRR4302518.9586644/101‑1 (MQ=60)

                                                                ATTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATA                                      <  SRR4302518.7166159/101‑1 (MQ=60)

                                                                 TTACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAA                                     <  SRR4302518.7133924/101‑1 (MQ=60)

                                                                 NNNCATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATTA                                     <  SRR4302518.11318947/101‑1 (MQ=60)

                                                                   NNNTAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGT                                   <  SRR4302518.12995487/101‑1 (MQ=60)

                                                                   ACATAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGT                                   <  SRR4302518.2616214/101‑1 (MQ=60)

                                                                    NNNAAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTG                                  <  SRR4302518.15080646/101‑1 (MQ=60)

                                                                    CATAAAGCCCCTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTG                                  <  SRR4302518.6764406/101‑1 (MQ=60)

                                                                       AAAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGNNN                               >  SRR4302518.12186690/1‑101 (MQ=60)

                                                                        AGGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGNNN                              >  SRR4302518.9835089/1‑101 (MQ=60)

                                                                        AAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATA                              >  SRR4302518.1764516/1‑101 (MQ=60)

                                                                        AAGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATA                              <  SRR4302518.2340780/101‑1 (MQ=60)

                                                                         NNNCCGTGAATATTCACGGG‑C‑T‑TTGT‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATAT                             <  SRR4302518.12148531/101‑1 (MQ=60)

                                                                         AGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATAT                             <  SRR4302518.3386163/101‑1 (MQ=60)

                                                                         AGCCCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGANNN                             >  SRR4302518.13697669/1‑101 (MQ=60)

                                                                           NNNGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTC                           <  SRR4302518.7994386/101‑1 (MQ=60)

                                                                            CCGTGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATNNN                          >  SRR4302518.9870232/1‑101 (MQ=60)

                                                                               TGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCANNN                       >  SRR4302518.10118096/1‑101 (MQ=60)

                                                                               TGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAG                       >  SRR4302518.2362541/1‑101 (MQ=60)

                                                                               TGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAG                       <  SRR4302518.1982327/101‑1 (MQ=60)

                                                                               TGAATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATAGTCANNN                       >  SRR4302518.10897606/1‑101 (MQ=60)

                                                                                 AATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAANNN                     >  SRR4302518.10178954/1‑101 (MQ=60)

                                                                                 AATATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTT                     >  SRR4302518.5284965/1‑101 (MQ=60)

                                                                                   TATTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTT                   <  SRR4302518.4135951/101‑1 (MQ=60)

                                                                                   NNNTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTT                   <  SRR4302518.13889538/101‑1 (MQ=60)

                                                                                    NNNCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTG                  <  SRR4302518.14451533/101‑1 (MQ=60)

                                                                                    AGTCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTNNN                  >  SRR4302518.12338953/1‑101 (MQ=60)

                                                                                     TTCACGGGTT‑T‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTNNN                 >  SRR4302518.13578466/1‑101 (MQ=60)

                                                                                      TCACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCT                <  SRR4302518.2564580/101‑1 (MQ=60)

                                                                                       nnncgggatT‑TT‑T‑TTAATATTTAATAAATCTCAATACATTCTGATAAAGCTTCCTGCCGTTGGACATTATTTCCGGATAAGTGGATATTCAAAGTTTTGCT                <  SRR4302518.11735568/92‑1 (MQ=60)

                                                                                        ACGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGT              >  SRR4302518.7346642/1‑101 (MQ=60)

                                                                                         CGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTT             >  SRR4302518.4790568/1‑101 (MQ=60)

                                                                                         CGGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTT             <  SRR4302518.5874297/101‑1 (MQ=60)

                                                                                          GGG‑CTT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGCTT            <  SRR4302518.1925727/101‑1 (MQ=60)

                                                                                            nnntT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTT           <  SRR4302518.14078802/97‑1 (MQ=60)

                                                                                              ctT‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTAT         <  SRR4302518.1743791/99‑1 (MQ=60)

                                                                                                   T‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCNNN     >  SRR4302518.11383122/1‑101 (MQ=60)

                                                                                                   T‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGG     <  SRR4302518.2250892/101‑1 (MQ=60)

                                                                                                   T‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGAATATTCAAAGTTTTGCTGTTTTATCNNN     >  SRR4302518.10836693/1‑101 (MQ=60)

                                                                                                   T‑T‑TTATTATTTAATAAACATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGG     <  SRR4302518.2112673/101‑1 (MQ=60)

                                                                                                   N‑N‑NTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGG     <  SRR4302518.8653218/101‑1 (MQ=60)

                                                                                                     T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGGTATTCAAAGTTTTGCTGTTTTATCANNN    >  SRR4302518.13123118/1‑101 (MQ=60)

                                                                                                     T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCANNN    >  SRR4302518.7800250/1‑101 (MQ=60)

                                                                                                       TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGNNN   >  SRR4302518.14299292/1‑101 (MQ=60)

                                                                                                       TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGA   >  SRR4302518.2236494/1‑101 (MQ=60)

                                                                                                       TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGA   >  SRR4302518.5249557/1‑101 (MQ=60)

                                                                                                        TATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAA  <  SRR4302518.438439/101‑1 (MQ=60)

                                                                                                        TATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAA  >  SRR4302518.5444099/1‑101 (MQ=60)

GTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAGTATTCACGGG‑C‑T‑TT‑T‑TTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAA  >  NC_000913/4041572‑4041771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`