Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	652,748	A→G	T431A (ACC→GCC)	citA →	putative sensor‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	652,748	0	A	G	100.0%	726.1 / NA	226	T431A (ACC→GCC)	citA	putative sensor‑type protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (96/130); total (96/130)

Only 100 of 231 total aligned reads displayed.

GTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCACCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTA  >  NC_000913/652659‑652837

gTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCg                                                                                        >  1:5679596/1‑93 (MQ=255)

 tAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGa                                                                                       >  2:5659509/1‑93 (MQ=255)

 tAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGa                                                                                       <  1:5968779/93‑1 (MQ=255)

 tAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGa                                                                                       >  2:5287967/1‑93 (MQ=255)

 tAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGa                                                                                       <  1:3629792/93‑1 (MQ=255)

  aaaGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAg                                                                                      >  1:4250879/1‑93 (MQ=255)

  aaaGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAg                                                                                      <  1:6096519/93‑1 (MQ=255)

   aaGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGt                                                                                     >  1:6066480/1‑93 (MQ=255)

   aaGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGt                                                                                     >  2:386882/1‑93 (MQ=255)

       gCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGc                                                                                 >  1:102784/1‑93 (MQ=255)

       gCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGc                                                                                 >  1:3876258/1‑93 (MQ=255)

       gCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGc                                                                                 <  1:843197/93‑1 (MQ=255)

       gCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGc                                                                                 <  2:2026996/93‑1 (MQ=255)

          gcgcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGc                                                                              >  1:3045909/1‑93 (MQ=255)

          gcgcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGc                                                                              >  1:4324964/1‑93 (MQ=255)

          gcgcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGc                                                                              <  2:4895890/93‑1 (MQ=255)

            gcgtCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCa                                                                            <  2:3422798/93‑1 (MQ=255)

            gcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCa                                                                            <  2:2719309/93‑1 (MQ=255)

            gcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCa                                                                            <  1:6161586/93‑1 (MQ=255)

             cgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCAt                                                                           >  2:6015593/1‑93 (MQ=255)

              gcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCAtt                                                                          <  1:1193843/93‑1 (MQ=255)

                ccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgt                                                                        >  1:4512191/1‑93 (MQ=255)

                ccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgt                                                                        <  1:1888024/93‑1 (MQ=255)

                ccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgt                                                                        >  1:991788/1‑93 (MQ=255)

                ccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgt                                                                        <  2:498038/93‑1 (MQ=255)

                 cGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgtg                                                                       <  1:210535/93‑1 (MQ=255)

                     aaCTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCa                                                                   >  2:2684489/1‑93 (MQ=255)

                       cTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAAt                                                                 >  1:2450214/1‑93 (MQ=255)

                          gggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTa                                                              >  2:3702087/1‑93 (MQ=255)

                          gggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTa                                                              <  1:1843510/93‑1 (MQ=255)

                           ggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTAc                                                             <  2:1268172/93‑1 (MQ=255)

                             cTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACtt                                                           >  2:4258059/1‑93 (MQ=255)

                             cTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACtt                                                           <  2:2356576/93‑1 (MQ=255)

                               aaaaaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGa                                                         >  1:5008295/1‑93 (MQ=255)

                                aaaaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGAt                                                        <  1:483880/93‑1 (MQ=255)

                                  aaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATaa                                                      >  2:4396967/1‑93 (MQ=255)

                                  aaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATaa                                                      <  2:1387512/93‑1 (MQ=255)

                                  aaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATaa                                                      <  2:5758787/93‑1 (MQ=255)

                                   aTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAAc                                                     <  1:5437425/93‑1 (MQ=255)

                                    tGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACg                                                    >  1:5120470/1‑93 (MQ=255)

                                     gATCATTGCCCCCGGTAGCCAGCTTTCGCAGCTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGc                                                   <  2:960020/93‑1 (MQ=255)

                                      ctCATTGTCCCCCGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCTAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGcc                                                  <  2:1591718/92‑1 (MQ=255)

                                      aTCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGcc                                                  <  1:5715661/93‑1 (MQ=255)

                                       tCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCt                                                 <  1:4753744/93‑1 (MQ=255)

                                       tCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCt                                                 <  2:5531040/93‑1 (MQ=255)

                                        cATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCtt                                                >  1:1387988/1‑93 (MQ=255)

                                        cATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCtt                                                <  1:5923008/93‑1 (MQ=255)

                                         aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               >  1:2945776/1‑93 (MQ=255)

                                         aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               <  1:3208018/93‑1 (MQ=255)

                                         aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               <  1:1467221/93‑1 (MQ=255)

                                         aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               <  2:4957906/93‑1 (MQ=255)

                                          ttGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCg                                              <  1:1939613/93‑1 (MQ=255)

                                            gTCCCCGGTAGCCAGCTTGCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGaa                                            <  1:2810615/93‑1 (MQ=255)

                                               cccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcc                                         >  2:3553796/1‑93 (MQ=255)

                                               cccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcc                                         >  2:3998113/1‑93 (MQ=255)

                                                ccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcca                                        <  1:5656614/93‑1 (MQ=255)

                                                ccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcca                                        >  2:5343984/1‑93 (MQ=255)

                                                 cGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccag                                       >  2:1178864/1‑93 (MQ=255)

                                                 cGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccag                                       >  2:518807/1‑93 (MQ=255)

                                                 cGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccag                                       >  1:69303/1‑93 (MQ=255)

                                                   gTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCGGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccagcc                                     <  2:2412862/93‑1 (MQ=255)

                                                    tAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCt                                    <  1:350979/93‑1 (MQ=255)

                                                    tAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCt                                    >  2:5915644/1‑93 (MQ=255)

                                                      gCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGc                                  >  1:4129477/1‑93 (MQ=255)

                                                       ccAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCg                                 >  2:2998637/1‑93 (MQ=255)

                                                       ccAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCg                                 >  1:2647134/1‑93 (MQ=255)

                                                        cAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGt                                >  1:5751712/1‑93 (MQ=255)

                                                         aGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTa                               <  2:1512500/93‑1 (MQ=255)

                                                          gCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAg                              >  1:3597343/1‑93 (MQ=255)

                                                          gCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGACAGCCTGCGTAg                              >  2:2171704/1‑93 (MQ=255)

                                                          gCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGGTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCCGCCTGCGTAg                              >  1:2444773/1‑93 (MQ=255)

                                                             ttCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGa                           >  2:4777806/1‑93 (MQ=255)

                                                                gCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGa                        <  1:2707039/93‑1 (MQ=255)

                                                                 cAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGaa                       <  1:2350643/93‑1 (MQ=255)

                                                                   aCTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAgg                     <  1:157207/93‑1 (MQ=255)

                                                                     tGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGaa                   <  1:4036981/93‑1 (MQ=255)

                                                                      gccgccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGaaa                  >  1:1067781/1‑93 (MQ=255)

                                                                      gccgccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGaaa                  <  2:3493107/93‑1 (MQ=255)

                                                                          ccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAg              <  2:4470059/93‑1 (MQ=255)

                                                                          ccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAg              >  2:1958207/1‑93 (MQ=255)

                                                                           cAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGa             >  1:3082649/1‑93 (MQ=255)

                                                                           cAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGa             <  1:3368321/93‑1 (MQ=255)

                                                                            aGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGAt            <  1:5882258/93‑1 (MQ=255)

                                                                            aGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGAt            <  2:2000269/93‑1 (MQ=255)

                                                                             ggACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATc           <  2:798219/93‑1 (MQ=255)

                                                                             ggACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATc           >  2:4652854/1‑93 (MQ=255)

                                                                              gACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCg          <  2:3063308/93‑1 (MQ=255)

                                                                              gACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCg          >  2:1033084/1‑93 (MQ=255)

                                                                               aCTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGt         >  1:868206/1‑93 (MQ=255)

                                                                               aCTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGt         <  2:6066480/93‑1 (MQ=255)

                                                                                cTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGtt        <  1:1907612/93‑1 (MQ=255)

                                                                                cTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGtt        <  2:2751973/93‑1 (MQ=255)

                                                                                 tGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACTCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTg       >  1:2244924/1‑93 (MQ=255)

                                                                                  ggATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGa      >  1:4163155/1‑93 (MQ=255)

                                                                                    aTAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAat    <  1:378634/93‑1 (MQ=255)

                                                                                    aTAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAat    <  2:767938/93‑1 (MQ=255)

                                                                                     tAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAatt   <  1:1991071/93‑1 (MQ=255)

                                                                                     tAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAatt   <  2:2959442/93‑1 (MQ=255)

                                                                                      aGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAatta  <  1:3426278/93‑1 (MQ=255)

                                                                                      aGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAatta  <  1:5270246/93‑1 (MQ=255)

GTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCACCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTA  >  NC_000913/652659‑652837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTGGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCACCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTATTCC  >  NC_000913/652655‑652841

TTTGGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCG                                                                                               <  SRR4302533.4790587/94‑1 (MQ=60)

  TGGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCC                                                                                             <  SRR4302533.2739536/94‑1 (MQ=60)

   GGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCG                                                                                            >  SRR4302533.5713898/1‑94 (MQ=60)

     TAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAG                                                                                          <  SRR4302533.3652126/94‑1 (MQ=60)

     TAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAG                                                                                          >  SRR4302533.4276525/1‑94 (MQ=60)

     TAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAG                                                                                          <  SRR4302533.6004914/94‑1 (MQ=60)

      AAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGT                                                                                         <  SRR4302533.6133344/94‑1 (MQ=60)

      AAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGT                                                                                         >  SRR4302533.6103194/1‑94 (MQ=60)

       AAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTT                                                                                        <  SRR4302533.6082072/94‑1 (MQ=60)

        AGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTT                                                                                       <  SRR4302533.5682851/94‑1 (MQ=60)

         GTGCAGCGCGCCCGGGAACTGGGGATAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTG                                                                                      <  SRR4302533.5805122/94‑1 (MQ=60)

          TGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGC                                                                                     >  SRR4302533.103426/1‑94 (MQ=60)

          TGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGC                                                                                     >  SRR4302533.3899919/1‑94 (MQ=60)

           GCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCA                                                                                    <  SRR4302533.848128/94‑1 (MQ=60)

            CAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAG                                                                                   <  SRR4302533.2714495/94‑1 (MQ=60)

             AGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGC                                                                                  >  SRR4302533.4351016/1‑94 (MQ=60)

             AGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGC                                                                                  >  SRR4302533.3064557/1‑94 (MQ=60)

                GCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCAT                                                                               <  SRR4302533.6198638/94‑1 (MQ=60)

                GCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCAT                                                                               >  SRR4302533.2857805/1‑94 (MQ=60)

                 CGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATT                                                                              <  SRR4302533.975321/94‑1 (MQ=60)

                  GCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTG                                                                             <  SRR4302533.1201020/94‑1 (MQ=60)

                   CCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGT                                                                            >  SRR4302533.4539514/1‑94 (MQ=60)

                   CCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGT                                                                            >  SRR4302533.997585/1‑94 (MQ=60)

                   CCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGT                                                                            <  SRR4302533.2677374/94‑1 (MQ=60)

                    CCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTT                                                                           <  SRR4302533.638657/94‑1 (MQ=60)

                    CCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTG                                                                           >  SRR4302533.983384/1‑94 (MQ=60)

                    CCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTG                                                                           <  SRR4302533.1899558/94‑1 (MQ=60)

                     CGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGG                                                                          >  SRR4302533.4558372/1‑94 (MQ=60)

                     CGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGG                                                                          <  SRR4302533.2081273/94‑1 (MQ=60)

                     CGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGG                                                                          <  SRR4302533.211863/94‑1 (MQ=60)

                       GGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGC                                                                        <  SRR4302533.4352677/94‑1 (MQ=60)

                        GAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCA                                                                       <  SRR4302533.6176927/94‑1 (MQ=60)

                        GAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCA                                                                       >  SRR4302533.128964/1‑94 (MQ=60)

                        GAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGCGGGCA                                                                       <  SRR4302533.3073323/94‑1 (MQ=60)

                          ACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAAT                                                                     >  SRR4302533.2465336/1‑94 (MQ=60)

                           CTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATT                                                                    <  SRR4302533.2239959/94‑1 (MQ=60)

                            TGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTT                                                                   >  SRR4302533.2350763/1‑94 (MQ=60)

                              GGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTAC                                                                 <  SRR4302533.1854753/94‑1 (MQ=60)

                               GGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACT                                                                <  SRR4302533.356459/94‑1 (MQ=60)

                                GCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTT                                                               >  SRR4302533.5757511/1‑94 (MQ=60)

                                GCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTT                                                               <  SRR4302533.3334390/94‑1 (MQ=60)

                                 CTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGGAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTG                                                              >  SRR4302533.3696751/1‑94 (MQ=60)

                                 CTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTG                                                              <  SRR4302533.6103428/94‑1 (MQ=60)

                                  TAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGA                                                             >  SRR4302533.1060517/1‑94 (MQ=60)

                                  TAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGA                                                             >  SRR4302533.5038642/1‑94 (MQ=60)

                                   AAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGAT                                                            >  SRR4302533.185934/1‑94 (MQ=60)

                                   AAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGAT                                                            >  SRR4302533.11640/1‑94 (MQ=60)

                                    AAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATA                                                           <  SRR4302533.486772/94‑1 (MQ=60)

                                      AATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGATTGCAGCCATTGTGGGCAATTTACTTGATAAC                                                         >  SRR4302533.3040502/1‑94 (MQ=60)

                                       ATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACG                                                        <  SRR4302533.4834169/94‑1 (MQ=60)

                                       ATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACG                                                        >  SRR4302533.5151407/1‑94 (MQ=60)

                                       ATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACG                                                        <  SRR4302533.5470173/94‑1 (MQ=60)

                                       ATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACG                                                        <  SRR4302533.5691157/94‑1 (MQ=60)

                                          ATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCT                                                     <  SRR4302533.5750183/94‑1 (MQ=60)

                                          ATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCT                                                     <  SRR4302533.1994602/94‑1 (MQ=60)

                                           TCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTT                                                    >  SRR4302533.6231179/1‑94 (MQ=60)

                                           TCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTT                                                    >  SRR4302533.1396345/1‑94 (MQ=60)

                                           TCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTT                                                    <  SRR4302533.4782561/94‑1 (MQ=60)

                                            CATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTC                                                   >  SRR4302533.2963792/1‑94 (MQ=60)

                                            CATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTC                                                   <  SRR4302533.5958810/94‑1 (MQ=60)

                                             ATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCG                                                  <  SRR4302533.1476068/94‑1 (MQ=60)

                                             ATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCG                                                  <  SRR4302533.3227772/94‑1 (MQ=60)

                                              TTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGA                                                 <  SRR4302533.1951444/94‑1 (MQ=60)

                                                GTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAG                                               <  SRR4302533.1857639/94‑1 (MQ=60)

                                                GTCCCCGGTAGCCAGCTTGCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAG                                               <  SRR4302533.2827911/94‑1 (MQ=60)

                                                 TCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGC                                              <  SRR4302533.5870665/94‑1 (MQ=60)

                                                  CCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCC                                             >  SRR4302533.3216978/1‑94 (MQ=60)

                                                   CCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCA                                            >  SRR4302533.2531152/1‑94 (MQ=60)

                                                    CCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAG                                           >  SRR4302533.69756/1‑94 (MQ=60)

                                                    CCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAG                                           <  SRR4302533.5690797/94‑1 (MQ=60)

                                                     CGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGC                                          >  SRR4302533.6076630/1‑94 (MQ=60)

                                                      GGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCC                                         <  SRR4302533.1469750/94‑1 (MQ=60)

                                                       gtgccccgctgTCGCAACTGCCGCCAGGGCTGGATAGCGCCGAGTTTGCAGTCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCT                                        <  SRR4302533.1446713/83‑1 (MQ=60)

                                                        TAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTG                                       <  SRR4302533.2386445/94‑1 (MQ=60)

                                                        TAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTG                                       <  SRR4302533.353119/94‑1 (MQ=60)

                                                         AGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGC                                      >  SRR4302533.4154544/1‑94 (MQ=60)

                                                          GCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCG                                     >  SRR4302533.2663397/1‑94 (MQ=60)

                                                          GCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCG                                     <  SRR4302533.4272767/94‑1 (MQ=60)

                                                           CCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGT                                    >  SRR4302533.5786411/1‑94 (MQ=60)

                                                            CAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTA                                   >  SRR4302533.5455571/1‑94 (MQ=60)

                                                            CAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTA                                   >  SRR4302533.3453780/1‑94 (MQ=60)

                                                            CAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTA                                   >  SRR4302533.4734710/1‑94 (MQ=60)

                                                             AGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAG                                  >  SRR4302533.5659727/1‑94 (MQ=60)

                                                             AGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAG                                  <  SRR4302533.427799/94‑1 (MQ=60)

                                                             AGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAG                                  >  SRR4302533.3619478/1‑94 (MQ=60)

                                                             AGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGGTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCCGCCTGCGTAG                                  >  SRR4302533.2459863/1‑94 (MQ=60)

                                                             AGCTGTCGCACCTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAG                                  <  SRR4302533.246515/94‑1 (MQ=60)

                                                              GCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGC                                 <  SRR4302533.4052925/94‑1 (MQ=60)

                                                                 TTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGAT                              >  SRR4302533.5950920/1‑94 (MQ=60)

                                                                  TCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATG                             <  SRR4302533.572801/94‑1 (MQ=60)

                                                                   CGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGGAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGA                            >  SRR4302533.1494277/1‑94 (MQ=60)

                                                                    GCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAA                           <  SRR4302533.5070456/94‑1 (MQ=60)

                                                                    GCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAA                           <  SRR4302533.2723647/94‑1 (MQ=60)

                                                                    GCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAA                           <  SRR4302533.3827486/94‑1 (MQ=60)

                                                                     CACCTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAG                          <  SRR4302533.196155/94‑1 (MQ=60)

                                                                     CAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAGG                          <  SRR4302533.4167253/94‑1 (MQ=60)

                                                                     CAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAG                          <  SRR4302533.2365184/94‑1 (MQ=60)

                                                                      AACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGG                         >  SRR4302533.4250292/1‑94 (MQ=60)

                                                                       ACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGA                        <  SRR4302533.158208/94‑1 (MQ=60)

                                                                       ACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGA                        >  SRR4302533.3436742/1‑94 (MQ=60)

                                                                        CTGCCGCGAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAA                       <  SRR4302533.2764782/94‑1 (MQ=60)

                                                                        CTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAA                       <  SRR4302533.1934795/94‑1 (MQ=60)

                                                                        CTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTAATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAA                       <  SRR4302533.3651909/94‑1 (MQ=60)

                                                                         TGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAA                      <  SRR4302533.856105/94‑1 (MQ=60)

                                                                         TGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAA                      <  SRR4302533.4061550/94‑1 (MQ=60)

                                                                         TGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAA                      >  SRR4302533.1074062/1‑94 (MQ=60)

                                                                          GCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAAC                     <  SRR4302533.4868906/94‑1 (MQ=60)

                                                                          GCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGAGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAAC                     <  SRR4302533.1456100/94‑1 (MQ=60)

                                                                            CGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAA                   <  SRR4302533.1738194/94‑1 (MQ=60)

                                                                              CCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGA                 <  SRR4302533.3345281/94‑1 (MQ=60)

                                                                              CCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGA                 >  SRR4302533.3101560/1‑94 (MQ=60)

                                                                               CAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGAT                <  SRR4302533.3389124/94‑1 (MQ=60)

                                                                                AGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATC               <  SRR4302533.5917807/94‑1 (MQ=60)

                                                                                 GGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCG              <  SRR4302533.2988637/94‑1 (MQ=60)

                                                                                 GGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCG              <  SRR4302533.5970860/94‑1 (MQ=60)

                                                                                  GACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGT             >  SRR4302533.873293/1‑94 (MQ=60)

                                                                                   ACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGGCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTT            >  SRR4302533.2288636/1‑94 (MQ=60)

                                                                                   ACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTT            >  SRR4302533.3534745/1‑94 (MQ=60)

                                                                                    CTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACTCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTG           >  SRR4302533.2258797/1‑94 (MQ=60)

                                                                                    CTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTG           <  SRR4302533.1919250/94‑1 (MQ=60)

                                                                                    CTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTG           <  SRR4302533.802291/94‑1 (MQ=60)

                                                                                     TGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGA          >  SRR4302533.4188378/1‑94 (MQ=60)

                                                                                     TGAATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGA          <  SRR4302533.5094846/94‑1 (MQ=60)

                                                                                        ATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATT       <  SRR4302533.380915/94‑1 (MQ=60)

                                                                                        ATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCAAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATT       <  SRR4302533.190893/94‑1 (MQ=60)

                                                                                         TAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTA      <  SRR4302533.2003268/94‑1 (MQ=60)

                                                                                          AGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTAT     <  SRR4302533.3447444/94‑1 (MQ=60)

                                                                                          AGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTAT     <  SRR4302533.4011306/94‑1 (MQ=60)

                                                                                          AGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTAT     <  SRR4302533.4080567/94‑1 (MQ=60)

                                                                                          AGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTAT     >  SRR4302533.1912492/1‑94 (MQ=60)

                                                                                          AGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTAT     >  SRR4302533.5473833/1‑94 (MQ=60)

                                                                                          AGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTAT     <  SRR4302533.5301853/94‑1 (MQ=60)

                                                                                             GCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTATTCC  <  SRR4302533.3135917/94‑1 (MQ=60)

                                                                                             GCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTATTCC  >  SRR4302533.3371991/1‑94 (MQ=60)

                                                                                             GCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTATTCC  <  SRR4302533.660449/94‑1 (MQ=60)

                                                                                             GCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTATTCC  <  SRR4302533.150009/94‑1 (MQ=60)

TTTGGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCACCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTATTCC  >  NC_000913/652655‑652841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`