Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 654,812 G→A A127V (GCC→GTC)  dcuC ← DcuC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913654,8120GA100.0% 957.4 / NA 258A127V (GCC→GTC) dcuCDcuC
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (120/138);  total (120/138)

Only 100 of 267 total aligned reads displayed.

ATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGGCGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGC  >  NC_000913/654722‑654900
                                                                                          |                                                                                        
aTACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACg                                                                                        >  1:2657900/1‑93 (MQ=255)
 tACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGa                                                                                       <  2:1137178/93‑1 (MQ=255)
 tACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGa                                                                                       >  1:2370401/1‑93 (MQ=255)
   ccAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACa                                                                                     >  2:5992826/1‑93 (MQ=255)
   ccAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACa                                                                                     <  1:2909253/93‑1 (MQ=255)
      aCGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACaaaa                                                                                  <  1:1365760/93‑1 (MQ=255)
        gTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATa                                                                                >  1:2200806/1‑93 (MQ=255)
        gTTTACCATCACCGGAAATAGGGCTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATa                                                                                >  2:594146/1‑93 (MQ=255)
         tttACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAg                                                                               <  2:5136447/93‑1 (MQ=255)
         tttACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAg                                                                               <  1:3779358/93‑1 (MQ=255)
          ttACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAgg                                                                              <  2:4058330/93‑1 (MQ=255)
          ttACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAgg                                                                              <  1:2118471/93‑1 (MQ=255)
          ttACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAgg                                                                              <  1:6228019/93‑1 (MQ=255)
           tACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggc                                                                             <  2:5881307/93‑1 (MQ=255)
           tACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggc                                                                             <  2:1520494/93‑1 (MQ=255)
           tACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggc                                                                             <  1:432436/93‑1 (MQ=255)
           tACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggc                                                                             <  2:881152/93‑1 (MQ=255)
            tccctCACCGGAAATAGTGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggcg                                                                            <  1:2294343/89‑1 (MQ=255)
              cATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggcggc                                                                          >  2:3037825/1‑93 (MQ=255)
              cATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggcggc                                                                          <  2:1986309/93‑1 (MQ=255)
              cATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAggcggc                                                                          <  1:3690555/93‑1 (MQ=255)
                tCACCGGAAATAGGGTTGCTATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCaa                                                                        >  2:4526263/1‑93 (MQ=255)
                 cACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAat                                                                       <  2:5441479/93‑1 (MQ=255)
                  aCCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAatc                                                                      >  1:5987493/1‑93 (MQ=255)
                  aCCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAatc                                                                      <  1:1689947/93‑1 (MQ=255)
                  aCCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGAAGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAatc                                                                      <  2:5003214/93‑1 (MQ=255)
                   ccGGAAATAGGGTTGCCATCAGCAAAACTCCCAGACCGGTTGCGGAAGAGACGGCCATAGACATCAGACAGACGACAAAATAGGCGGCAatca                                                                     <  2:2039088/93‑1 (MQ=255)
                   ccGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAatca                                                                     <  1:2982232/93‑1 (MQ=255)
                     ggAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAatcatc                                                                   <  2:2664205/93‑1 (MQ=255)
                          tAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATcagcag                                                              <  2:2447417/93‑1 (MQ=255)
                          tAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATcagcag                                                              >  2:1229966/1‑93 (MQ=255)
                          tAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATcagcag                                                              >  2:2338834/1‑93 (MQ=255)
                          tAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATcagcag                                                              >  1:5325273/1‑93 (MQ=255)
                            gggTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGt                                                            <  1:4253682/93‑1 (MQ=255)
                            gggTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGt                                                            >  1:827823/1‑93 (MQ=255)
                            gggTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGt                                                            >  2:5756022/1‑93 (MQ=255)
                            gggTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGt                                                            <  2:780115/93‑1 (MQ=255)
                            gggTTGCCATCAGCAAAACACCCAGACCGGCTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCACCAGCAgga                                                            >  2:6253332/1‑92 (MQ=255)
                             ggTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTa                                                           <  1:1583810/93‑1 (MQ=255)
                              gTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTaa                                                          <  1:1821550/93‑1 (MQ=255)
                              gTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTaa                                                          <  2:2187154/93‑1 (MQ=255)
                                tGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAgg                                                        <  2:4137099/93‑1 (MQ=255)
                                tGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAgg                                                        <  1:5225338/93‑1 (MQ=255)
                                 gCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAggg                                                       <  1:1545283/93‑1 (MQ=255)
                                     tCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGt                                                   >  1:1473963/1‑93 (MQ=255)
                                        gCAAAACACCCATGCCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTaa                                                <  2:1084493/93‑1 (MQ=255)
                                         cAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAat                                               >  2:606106/1‑93 (MQ=255)
                                          aaaaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAata                                              <  1:762194/93‑1 (MQ=255)
                                          aaaaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAata                                              >  2:3254172/1‑93 (MQ=255)
                                           aaaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAatat                                             >  1:2632162/1‑93 (MQ=255)
                                           aaaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAatat                                             <  1:2016411/93‑1 (MQ=255)
                                           aaaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGGTAatat                                             >  2:4949256/1‑93 (MQ=255)
                                            aaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAAtata                                            <  2:2822368/93‑1 (MQ=255)
                                            aaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAAtata                                            >  2:4881594/1‑93 (MQ=255)
                                            aaCACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAAtata                                            <  1:2411736/93‑1 (MQ=255)
                                             acacCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATAc                                           <  1:3035307/93‑1 (MQ=255)
                                              cacCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACt                                          <  1:1150282/93‑1 (MQ=255)
                                                cccAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGc                                        >  2:4385480/1‑93 (MQ=255)
                                                 ccAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCa                                       <  1:2147509/93‑1 (MQ=255)
                                                  cAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCaa                                      <  2:3509931/93‑1 (MQ=255)
                                                     aCCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATgg                                   <  1:4693417/93‑1 (MQ=255)
                                                     aCCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATgg                                   >  1:4662377/1‑93 (MQ=255)
                                                       cGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGtt                                 <  2:307654/93‑1 (MQ=255)
                                                        ggTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGttt                                >  1:5781017/1‑93 (MQ=255)
                                                         gTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGtttt                               <  1:4240146/93‑1 (MQ=255)
                                                         gTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGtttt                               >  2:4296658/1‑93 (MQ=255)
                                                         gTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGtttt                               >  2:661741/1‑93 (MQ=255)
                                                         gTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGtttt                               >  2:4092450/1‑93 (MQ=255)
                                                           tGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGa                             <  2:1032594/93‑1 (MQ=255)
                                                               gAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGcc                         <  2:4777496/93‑1 (MQ=255)
                                                                aaGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCa                        >  1:1019900/1‑93 (MQ=255)
                                                                aaGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCa                        <  1:5352922/93‑1 (MQ=255)
                                                                aaGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCa                        <  1:696406/93‑1 (MQ=255)
                                                                  gagaCGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGc                      >  1:399480/1‑93 (MQ=255)
                                                                   agaCGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCt                     >  1:5102278/1‑93 (MQ=255)
                                                                    gaCGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCtt                    <  2:3813283/93‑1 (MQ=255)
                                                                    gaCGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCtt                    <  1:5474089/93‑1 (MQ=255)
                                                                    gaCGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCtt                    >  2:4360913/1‑93 (MQ=255)
                                                                     aCGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTg                   <  2:1899221/93‑1 (MQ=255)
                                                                      cGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGa                  <  2:1763285/93‑1 (MQ=255)
                                                                       ggCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGac                 <  2:2624737/93‑1 (MQ=255)
                                                                         ccAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGacca               <  2:5305973/93‑1 (MQ=255)
                                                                           agagACATCAGAGAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGaccacc             >  1:3407628/1‑93 (MQ=255)
                                                                           agagACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGaccacc             >  1:2613498/1‑93 (MQ=255)
                                                                           agagACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGaccacc             <  1:3817936/93‑1 (MQ=255)
                                                                            gagaCATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGAccacca            >  2:2425410/1‑93 (MQ=255)
                                                                            gagaCATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGAccacca            <  2:1675300/93‑1 (MQ=255)
                                                                             agaCATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGTCAGCTTGACCACCat           >  2:2977294/1‑93 (MQ=255)
                                                                             agaCATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCat           >  2:1154427/1‑93 (MQ=255)
                                                                               aCATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCatat         >  2:3404008/1‑93 (MQ=255)
                                                                                 aTCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCa       <  1:6039454/93‑1 (MQ=255)
                                                                                 aTCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCa       >  2:2387942/1‑93 (MQ=255)
                                                                                 aTCACACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCa       <  2:4675143/93‑1 (MQ=255)
                                                                                  tCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCAt      >  2:5825509/1‑93 (MQ=255)
                                                                                  tCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCAt      <  2:1631866/93‑1 (MQ=255)
                                                                                  tCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCAt      >  1:502696/1‑93 (MQ=255)
                                                                                  tCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGATTGACCACCATATCAt      >  2:3202129/1‑93 (MQ=255)
                                                                                   cagacagaCGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCAtt     <  1:3146322/93‑1 (MQ=255)
                                                                                     gACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTcg   >  2:4457328/1‑93 (MQ=255)
                                                                                      aCAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTcgc  <  2:2746590/93‑1 (MQ=255)
                                                                                          |                                                                                        
ATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGGCGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGC  >  NC_000913/654722‑654900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGGCGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGCGCC  >  NC_000913/654720‑654903
                                                                                            |                                                                                           
TGATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGAC                                                                                            >  SRR4302533.6145642/1‑94 (MQ=60)
TGATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGAC                                                                                            >  SRR4302533.2434874/1‑94 (MQ=60)
TGATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGAC                                                                                            >  SRR4302533.6278768/1‑94 (MQ=60)
 GATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACG                                                                                           <  SRR4302533.2975985/94‑1 (MQ=60)
 GATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACG                                                                                           >  SRR4302533.2674229/1‑94 (MQ=60)
  ATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGA                                                                                          >  SRR4302533.4271594/1‑94 (MQ=60)
  ATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGA                                                                                          >  SRR4302533.2385064/1‑94 (MQ=60)
  ATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGA                                                                                          <  SRR4302533.2870012/94‑1 (MQ=60)
     CCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAA                                                                                       <  SRR4302533.2927113/94‑1 (MQ=60)
      CAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAA                                                                                      <  SRR4302533.1928356/94‑1 (MQ=60)
      CAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAA                                                                                      >  SRR4302533.3757066/1‑94 (MQ=60)
       AACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAA                                                                                     >  SRR4302533.3585610/1‑94 (MQ=60)
        ACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAAT                                                                                    <  SRR4302533.1373971/94‑1 (MQ=60)
        ACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAAT                                                                                    <  SRR4302533.6301735/94‑1 (MQ=60)
         CGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATA                                                                                   >  SRR4302533.2214364/1‑94 (MQ=60)
         CGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATA                                                                                   >  SRR4302533.2659077/1‑94 (MQ=60)
         CGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATA                                                                                   >  SRR4302533.3313397/1‑94 (MQ=60)
          GTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAG                                                                                  >  SRR4302533.2268953/1‑94 (MQ=60)
           TTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGG                                                                                 <  SRR4302533.3802511/94‑1 (MQ=60)
            TTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGC                                                                                <  SRR4302533.6265330/94‑1 (MQ=60)
            TTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGC                                                                                <  SRR4302533.2131536/94‑1 (MQ=60)
            TTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGC                                                                                >  SRR4302533.2961229/1‑94 (MQ=60)
             TACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCG                                                                               <  SRR4302533.435011/94‑1 (MQ=60)
             TACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCG                                                                               >  SRR4302533.573438/1‑94 (MQ=60)
              tcccTCACCGGAAATAGTGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGG                                                                              <  SRR4302533.2308545/90‑1 (MQ=60)
              ACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGG                                                                              <  SRR4302533.540615/94‑1 (MQ=60)
               CCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGC                                                                             <  SRR4302533.508353/94‑1 (MQ=60)
               CCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGC                                                                             >  SRR4302533.759440/1‑94 (MQ=60)
                CATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCA                                                                            <  SRR4302533.3713229/94‑1 (MQ=60)
                 ATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAA                                                                           <  SRR4302533.4319921/94‑1 (MQ=60)
                   CACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATC                                                                         >  SRR4302533.6023751/1‑94 (MQ=60)
                   CACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATC                                                                         >  SRR4302533.3091336/1‑94 (MQ=60)
                    ACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCA                                                                        <  SRR4302533.1700183/94‑1 (MQ=60)
                     CCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCAT                                                                       >  SRR4302533.1568146/1‑94 (MQ=60)
                     CCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCAT                                                                       <  SRR4302533.3000474/94‑1 (MQ=60)
                     CCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCAT                                                                       >  SRR4302533.1353216/1‑94 (MQ=60)
                       GGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCA                                                                     >  SRR4302533.5939069/1‑94 (MQ=60)
                       GGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCA                                                                     <  SRR4302533.1627121/94‑1 (MQ=60)
                       GGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCA                                                                     >  SRR4302533.2608476/1‑94 (MQ=60)
                       GGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCA                                                                     <  SRR4302533.1883118/94‑1 (MQ=60)
                        GAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAG                                                                    >  SRR4302533.2200629/1‑94 (MQ=60)
                        GAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAG                                                                    <  SRR4302533.649899/94‑1 (MQ=60)
                         AAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGC                                                                   >  SRR4302533.963139/1‑94 (MQ=60)
                         AAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGC                                                                   >  SRR4302533.2200290/1‑94 (MQ=60)
                          AATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCA                                                                  >  SRR4302533.897178/1‑94 (MQ=60)
                          AATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCA                                                                  >  SRR4302533.4741056/1‑94 (MQ=60)
                           ATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAG                                                                 <  SRR4302533.813275/94‑1 (MQ=60)
                           ATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAG                                                                 >  SRR4302533.6145434/1‑94 (MQ=60)
                           ATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAG                                                                 >  SRR4302533.1754253/1‑94 (MQ=60)
                           ATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAG                                                                 >  SRR4302533.4694079/1‑94 (MQ=60)
                           ATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAG                                                                 >  SRR4302533.5357186/1‑94 (MQ=60)
                             AGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGT                                                               >  SRR4302533.832679/1‑94 (MQ=60)
                              GGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTA                                                              <  SRR4302533.4279336/94‑1 (MQ=60)
                               GGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAA                                                             >  SRR4302533.1630629/1‑94 (MQ=60)
                               GGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAA                                                             <  SRR4302533.1593354/94‑1 (MQ=60)
                                GTTGCCATCAGCAAAACACGCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAG                                                            <  SRR4302533.2240574/94‑1 (MQ=60)
                                GTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGCCAAAATAGGCGGCAATCATCAGCAGGTAAG                                                            >  SRR4302533.2112934/1‑94 (MQ=60)
                                GTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAG                                                            <  SRR4302533.1832675/94‑1 (MQ=60)
                                 TTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGG                                                           <  SRR4302533.586713/94‑1 (MQ=60)
                                  TGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGG                                                          <  SRR4302533.5256783/94‑1 (MQ=60)
                                   GCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGG                                                         <  SRR4302533.1554593/94‑1 (MQ=60)
                                    CCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGACAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGA                                                        >  SRR4302533.238908/1‑94 (MQ=60)
                                     CATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAG                                                       <  SRR4302533.5341225/94‑1 (MQ=60)
                                      ATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGT                                                      <  SRR4302533.300494/94‑1 (MQ=60)
                                      ATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGT                                                      >  SRR4302533.1419419/1‑94 (MQ=60)
                                      ATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGT                                                      >  SRR4302533.1482870/1‑94 (MQ=60)
                                      ATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGT                                                      >  SRR4302533.2320777/1‑94 (MQ=60)
                                      ATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGT                                                      >  SRR4302533.4003688/1‑94 (MQ=60)
                                          GCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAAT                                                  <  SRR4302533.5148173/94‑1 (MQ=60)
                                          GCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAAT                                                  <  SRR4302533.6074224/94‑1 (MQ=60)
                                           CAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATA                                                 >  SRR4302533.130815/1‑94 (MQ=60)
                                            AAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATAT                                                >  SRR4302533.2648338/1‑94 (MQ=60)
                                            AAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATAT                                                <  SRR4302533.766679/94‑1 (MQ=60)
                                             AAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATA                                               <  SRR4302533.389158/94‑1 (MQ=60)
                                             AAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATA                                               <  SRR4302533.2028835/94‑1 (MQ=60)
                                              AACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATAC                                              <  SRR4302533.2426632/94‑1 (MQ=60)
                                               ACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACT                                             <  SRR4302533.3053882/94‑1 (MQ=60)
                                                CACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTG                                            <  SRR4302533.2631638/94‑1 (MQ=60)
                                                CACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTG                                            <  SRR4302533.4481190/94‑1 (MQ=60)
                                                CACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTG                                            <  SRR4302533.1157160/94‑1 (MQ=60)
                                                CACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGGAAGGGGAGATAATATACTG                                            >  SRR4302533.3826457/1‑94 (MQ=60)
                                                  CCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGATAATATACTGCA                                          >  SRR4302533.4068403/1‑94 (MQ=60)
                                                   CCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAA                                         >  SRR4302533.3145526/1‑94 (MQ=60)
                                                   CCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAA                                         <  SRR4302533.2160736/94‑1 (MQ=60)
                                                   CCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGATAATATACTGtca                                         >  SRR4302533.5626607/1‑91 (MQ=60)
                                                      GACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGG                                      <  SRR4302533.811519/94‑1 (MQ=60)
                                                      GACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGG                                      >  SRR4302533.4690629/1‑94 (MQ=60)
                                                       ACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGT                                     <  SRR4302533.4721859/94‑1 (MQ=60)
                                                       ACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGT                                     <  SRR4302533.6239494/94‑1 (MQ=60)
                                                        CCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTT                                    <  SRR4302533.3006433/94‑1 (MQ=60)
                                                         CGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTT                                   >  SRR4302533.5815933/1‑94 (MQ=60)
                                                          GGTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTT                                  >  SRR4302533.1051748/1‑94 (MQ=60)
                                                           GTTGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTG                                 <  SRR4302533.4265755/94‑1 (MQ=60)
                                                             TGCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGAC                               <  SRR4302533.1505475/94‑1 (MQ=60)
                                                              GCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACG                              <  SRR4302533.3720502/94‑1 (MQ=60)
                                                              GCGGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACG                              <  SRR4302533.4080568/94‑1 (MQ=60)
                                                                GGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCC                            >  SRR4302533.1572694/1‑94 (MQ=60)
                                                                GGAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCC                            <  SRR4302533.2081240/94‑1 (MQ=60)
                                                                 GAAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCA                           >  SRR4302533.1025894/1‑94 (MQ=60)
                                                                  AAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAG                          <  SRR4302533.700525/94‑1 (MQ=60)
                                                                  AAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAG                          <  SRR4302533.5385047/94‑1 (MQ=60)
                                                                  AAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAG                          <  SRR4302533.5385048/94‑1 (MQ=60)
                                                                  AAGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGCTTTGACGCCAG                          >  SRR4302533.5131992/1‑94 (MQ=60)
                                                                   AGAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGC                         >  SRR4302533.401892/1‑94 (MQ=60)
                                                                    GAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCT                        >  SRR4302533.5133102/1‑94 (MQ=60)
                                                                    GAGACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCT                        <  SRR4302533.1386545/94‑1 (MQ=60)
                                                                      GACGGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTG                      <  SRR4302533.5507084/94‑1 (MQ=60)
                                                                         GGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACC                   >  SRR4302533.3703035/1‑94 (MQ=60)
                                                                         GGCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACC                   >  SRR4302533.2549526/1‑94 (MQ=60)
                                                                          GCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCA                  >  SRR4302533.5341171/1‑94 (MQ=60)
                                                                          GCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCA                  >  SRR4302533.5044220/1‑94 (MQ=60)
                                                                          GCCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCA                  >  SRR4302533.279031/1‑94 (MQ=60)
                                                                           CCAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCAC                 >  SRR4302533.2155427/1‑94 (MQ=60)
                                                                            CAGAGACATCAGAGAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACC                >  SRR4302533.3428675/1‑94 (MQ=60)
                                                                            CAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACC                <  SRR4302533.2385760/94‑1 (MQ=60)
                                                                            CAGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACC                >  SRR4302533.2629540/1‑94 (MQ=60)
                                                                             AGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCA               >  SRR4302533.2662833/1‑94 (MQ=60)
                                                                             AGAGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCA               <  SRR4302533.3841282/94‑1 (MQ=60)
                                                                               AGACATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATA             <  SRR4302533.4624781/94‑1 (MQ=60)
                                                                                  CATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCA          <  SRR4302533.5381530/94‑1 (MQ=60)
                                                                                  CATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCA          >  SRR4302533.4335269/1‑94 (MQ=60)
                                                                                   ATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCAT         <  SRR4302533.6076051/94‑1 (MQ=60)
                                                                                   ATCAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCAT         >  SRR4302533.505684/1‑94 (MQ=60)
                                                                                     CAGACAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTC       <  SRR4302533.3165669/94‑1 (MQ=60)
                                                                                         CAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGCGC   >  SRR4302533.4035352/1‑94 (MQ=60)
                                                                                         CAGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGCGC   >  SRR4302533.90445/1‑94 (MQ=60)
                                                                                          AGACGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGCGCC  <  SRR4302533.3589466/94‑1 (MQ=60)
                                                                                            |                                                                                           
TGATACCAACGTTTACCATCACCGGAAATAGGGTTGCCATCAGCAAAACACCCAGACCGGTTGCGGAAGAGACGGCCAGAGACATCAGACAGGCGACAAAATAGGCGGCAATCATCAGCAGGTAAGGGGAGTTAATATACTGCAATGGTTTTGACGCCAGCTTGACCACCATATCATTCGCGCC  >  NC_000913/654720‑654903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑