Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
694,728 |
G→A |
S135S (TCG→TCA) |
yleB → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 694,728 | 0 | G | A | 100.0%
| 770.0
/ NA
| 209 | S135S (TCG→TCA) | yleB | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (94/115); total (94/115) |
Only 100 of 230 total aligned reads displayed.
TGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCGCTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGA > NC_000913/694638‑694817
|
tGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACt > 1:5250367/1‑93 (MQ=255)
tGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACt > 2:3184651/1‑93 (MQ=255)
ggCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTg > 2:3012764/1‑93 (MQ=255)
gCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGa < 1:5682682/93‑1 (MQ=255)
cTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAt > 2:5089671/1‑93 (MQ=255)
tataTGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAtt > 2:3846420/1‑93 (MQ=255)
tataTGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAtt < 1:4240467/93‑1 (MQ=255)
tataTGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAtt > 1:2775127/1‑93 (MQ=255)
tataTGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAtt < 2:3424170/93‑1 (MQ=255)
tataTGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGCTACGTGTGCCAGGCTCACTGAtt > 2:2574644/1‑93 (MQ=255)
atatGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTg > 1:1174344/1‑93 (MQ=255)
atatGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTg > 1:4794702/1‑93 (MQ=255)
ggtggAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGGAACGTTACGTGTGCCAGGGTCACTGATTGCGCt > 2:4135/1‑93 (MQ=255)
tggAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGc < 1:3155202/93‑1 (MQ=255)
ggAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCa < 1:223222/93‑1 (MQ=255)
ggAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCa < 1:1568110/93‑1 (MQ=255)
gAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCAt < 1:1661883/93‑1 (MQ=255)
acacTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGcc < 1:409991/93‑1 (MQ=255)
cacTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCa < 2:1641544/93‑1 (MQ=255)
cTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCatg > 2:5498693/1‑93 (MQ=255)
tGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCatga < 1:4417742/93‑1 (MQ=255)
gTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCatgat < 1:2835508/93‑1 (MQ=255)
gTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCatgat > 1:5974892/1‑93 (MQ=255)
tCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGGATCCGAAAGTAACGTTACCTGTGCCAGGCTCACTGACTGCGCTGCATCCGCatggtt > 2:6143330/1‑90 (MQ=255)
tCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCatgatg > 2:5162218/1‑93 (MQ=255)
tCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCatgatg < 1:4580105/93‑1 (MQ=255)
tCCTGCAACAGGCGTTGTGGCAGGCGCAAGAAGCGCATCCGAAAGTAACGGTACGTGTGCCAGGGTCACTGATTGCGCTGCATCGCCatgatg > 2:2193186/1‑93 (MQ=255)
ccTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCAtgatga < 2:6202768/93‑1 (MQ=255)
ccTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCAtgatga < 1:1495504/93‑1 (MQ=255)
cTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCCGGCTCACTGATTGCGCTGCATCGCCCTgatgat > 2:1212528/1‑93 (MQ=255)
tGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATc < 2:1803911/93‑1 (MQ=255)
tGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATc > 2:6250191/1‑93 (MQ=255)
gCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCt > 1:3944344/1‑93 (MQ=255)
gCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCt < 2:4666151/93‑1 (MQ=255)
aaCAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTc > 1:702717/1‑93 (MQ=255)
aaCAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTc < 2:1280034/93‑1 (MQ=255)
aCAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCa < 2:803351/93‑1 (MQ=255)
aCAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCa < 1:3253563/93‑1 (MQ=255)
cAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAg < 2:5516371/93‑1 (MQ=255)
cAGGCGTTGCGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAg > 1:4195035/1‑93 (MQ=255)
ggCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAgga < 1:1253591/93‑1 (MQ=255)
cGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagc < 2:2715873/93‑1 (MQ=255)
gTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagct > 2:3968290/1‑93 (MQ=255)
gTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagct < 2:2109337/93‑1 (MQ=255)
ttGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctg < 1:4989262/93‑1 (MQ=255)
ttGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctg < 2:4194059/93‑1 (MQ=255)
ttGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctg > 2:4011538/1‑93 (MQ=255)
ttGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctg < 1:380318/93‑1 (MQ=255)
ttGTGGCAGGCGCTGGAAGCGCATCCGAAAGGAACGTTACATGTGCCAGGCACCCTGATTGCGCTGCATCGCCATGATGATCTTCAcgagctg > 2:2077915/1‑93 (MQ=255)
tgtgGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctgg > 2:2900077/1‑93 (MQ=255)
tgtgGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctgg < 1:823380/93‑1 (MQ=255)
gtgGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctgga < 2:3320859/93‑1 (MQ=255)
gtgGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAggagctgga < 2:3725616/93‑1 (MQ=255)
gcgcTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGaaa < 1:128143/93‑1 (MQ=255)
gcgcTGAAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGaaa < 1:2059120/93‑1 (MQ=255)
cgcTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAg < 1:5489399/93‑1 (MQ=255)
cgcTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAg > 1:1433320/1‑93 (MQ=255)
cgcTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAg > 1:643013/1‑93 (MQ=255)
cTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGTCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGc < 1:3713685/93‑1 (MQ=255)
cTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGc < 2:5693103/93‑1 (MQ=255)
tGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCg < 1:2403180/93‑1 (MQ=255)
tGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCg > 2:651758/1‑93 (MQ=255)
ggAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCgg < 1:6086682/93‑1 (MQ=255)
ggAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCgg > 1:4908972/1‑93 (MQ=255)
ggAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCgg > 1:5944682/1‑93 (MQ=255)
aGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGa < 1:1823794/93‑1 (MQ=255)
gcgcATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGaa < 1:582797/93‑1 (MQ=255)
cgcATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAg > 2:5757655/1‑93 (MQ=255)
cgcATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAg < 1:4753869/93‑1 (MQ=255)
gcATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGt < 2:3514965/93‑1 (MQ=255)
gcATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGt > 1:3535881/1‑93 (MQ=255)
gcATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGt > 1:4498699/1‑93 (MQ=255)
aTCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGa > 2:1051316/1‑93 (MQ=255)
aTCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGa < 1:5068790/93‑1 (MQ=255)
ccGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAtt < 1:3416682/93‑1 (MQ=255)
ccGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAtt < 1:187346/93‑1 (MQ=255)
ccGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAtt < 2:4628742/93‑1 (MQ=255)
ccGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAtt < 1:5380785/93‑1 (MQ=255)
gAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTcg > 2:2481322/1‑93 (MQ=255)
aaaGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTcgc > 1:2267098/1‑93 (MQ=255)
aaaGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTcgc > 1:5740755/1‑93 (MQ=255)
aGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTcgcgc > 1:2665511/1‑93 (MQ=255)
aaCGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGaa < 1:288239/93‑1 (MQ=255)
aaCGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGaa < 1:2569389/93‑1 (MQ=255)
aaCGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGaa < 2:4533390/93‑1 (MQ=255)
ttACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTg < 2:5434862/93‑1 (MQ=255)
ttACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTg < 2:833419/93‑1 (MQ=255)
tACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTgg < 2:5206298/93‑1 (MQ=255)
tACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTgg < 2:5265124/93‑1 (MQ=255)
cGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTg > 1:2901775/1‑93 (MQ=255)
gtgtGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGa > 2:4879954/1‑93 (MQ=255)
tgtgCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGAt < 1:5895511/93‑1 (MQ=255)
tgCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTg < 2:3490340/93‑1 (MQ=255)
gCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTgg < 2:5792393/93‑1 (MQ=255)
gCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTgg < 2:4782782/93‑1 (MQ=255)
gCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTgg < 2:4256666/93‑1 (MQ=255)
cAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTg > 2:5291720/1‑93 (MQ=255)
aGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGc > 2:2794729/1‑93 (MQ=255)
ggCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGcc > 2:6055316/1‑93 (MQ=255)
cTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGa > 2:3908107/1‑93 (MQ=255)
|
TGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCGCTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGA > NC_000913/694638‑694817
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCGCTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGACGGC > NC_000913/694636‑694821
|
CTTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAACGTAACGTTACGTGTGCCAGGCTCAC > SRR4302533.997496/1‑94 (MQ=60)
CTTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCAC > SRR4302533.5995760/1‑94 (MQ=60)
TTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACT < SRR4302533.5651172/94‑1 (MQ=60)
TTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACT > SRR4302533.5281920/1‑94 (MQ=60)
TTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACT < SRR4302533.311246/94‑1 (MQ=60)
GGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGA < SRR4302533.2858171/94‑1 (MQ=60)
GCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAT < SRR4302533.5717011/94‑1 (MQ=60)
GCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGAT < SRR4302533.2770123/94‑1 (MQ=60)
CTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGGAGCGCATACGAAAGTAACGTTACGTGTGCCAGGCTCACTGATT > SRR4302533.4801187/1‑94 (MQ=60)
CTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATT > SRR4302533.2792170/1‑94 (MQ=60)
TATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTG > SRR4302533.1181393/1‑94 (MQ=60)
TATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTG > SRR4302533.838302/1‑94 (MQ=60)
TATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTG > SRR4302533.594657/1‑94 (MQ=60)
TATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTG < SRR4302533.5501691/94‑1 (MQ=60)
TATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTG > SRR4302533.4823747/1‑94 (MQ=60)
TATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTG < SRR4302533.4266076/94‑1 (MQ=60)
ATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGC > SRR4302533.5246010/1‑94 (MQ=60)
TATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCG > SRR4302533.772867/1‑94 (MQ=60)
TGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCA < SRR4302533.3174600/94‑1 (MQ=60)
GGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCAT < SRR4302533.1577552/94‑1 (MQ=60)
GGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCAT < SRR4302533.224614/94‑1 (MQ=60)
GAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATC < SRR4302533.1671930/94‑1 (MQ=60)
AAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCG < SRR4302533.2877605/94‑1 (MQ=60)
ACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCA < SRR4302533.412449/94‑1 (MQ=60)
CACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCTCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCAT < SRR4302533.4167966/94‑1 (MQ=60)
CACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCAT > SRR4302533.1850316/1‑94 (MQ=60)
ACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATG > SRR4302533.5673531/1‑94 (MQ=60)
ACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATG > SRR4302533.3808519/1‑94 (MQ=60)
ACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATG > SRR4302533.1662666/1‑94 (MQ=60)
TGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGAT < SRR4302533.4444452/94‑1 (MQ=60)
TGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGAT > SRR4302533.6011060/1‑94 (MQ=60)
TGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGAT < SRR4302533.4028481/94‑1 (MQ=60)
TGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCCAAAGTAACGCTACGGGTGCCAGGATCACTGATTGCGCTGCATCGCCATGAT > SRR4302533.5999904/1‑94 (MQ=60)
GTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATG < SRR4302533.2852956/94‑1 (MQ=60)
TCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGA < SRR4302533.4607859/94‑1 (MQ=60)
CCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGAT < SRR4302533.574535/94‑1 (MQ=60)
CCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGAT < SRR4302533.1504515/94‑1 (MQ=60)
TGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCT > SRR4302533.3968405/1‑94 (MQ=60)
CAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTC > SRR4302533.706873/1‑94 (MQ=60)
ACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAG < SRR4302533.3273627/94‑1 (MQ=60)
ACAGGCGTTGCGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAG > SRR4302533.4220427/1‑94 (MQ=60)
CAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGG < SRR4302533.3766420/94‑1 (MQ=60)
GGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAG > SRR4302533.1457824/1‑94 (MQ=60)
GGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAG > SRR4302533.4606716/1‑94 (MQ=60)
GGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAG < SRR4302533.1261086/94‑1 (MQ=60)
GGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAG < SRR4302533.2825569/94‑1 (MQ=60)
GCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGC > SRR4302533.6054461/1‑94 (MQ=60)
CGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCT > SRR4302533.1210108/1‑94 (MQ=60)
CGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCT > SRR4302533.5786727/1‑94 (MQ=60)
GTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTG > SRR4302533.3194670/1‑94 (MQ=60)
TTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGG < SRR4302533.5019510/94‑1 (MQ=60)
TTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGG < SRR4302533.382608/94‑1 (MQ=60)
TGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGA < SRR4302533.828210/94‑1 (MQ=60)
GGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCT > SRR4302533.6249725/1‑94 (MQ=60)
GCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTG < SRR4302533.3369673/94‑1 (MQ=60)
CAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGA > SRR4302533.6197399/1‑94 (MQ=60)
AGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAA < SRR4302533.1380310/94‑1 (MQ=60)
GCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAG > SRR4302533.1441978/1‑94 (MQ=60)
GCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAG > SRR4302533.646794/1‑94 (MQ=60)
GCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAG < SRR4302533.128945/94‑1 (MQ=60)
GCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAG < SRR4302533.3234901/94‑1 (MQ=60)
GCGCTGAAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAG < SRR4302533.2071818/94‑1 (MQ=60)
CGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGG < SRR4302533.5522490/94‑1 (MQ=60)
CGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGG > SRR4302533.2976807/1‑94 (MQ=60)
CTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGTCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCG < SRR4302533.3736487/94‑1 (MQ=60)
TGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGG > SRR4302533.5901637/1‑94 (MQ=60)
TGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGG > SRR4302533.4938712/1‑94 (MQ=60)
TGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGG > SRR4302533.5980864/1‑94 (MQ=60)
TGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGG < SRR4302533.2418022/94‑1 (MQ=60)
TGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGG > SRR4302533.5980632/1‑94 (MQ=60)
GGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGT < SRR4302533.6123480/94‑1 (MQ=60)
GAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTG < SRR4302533.2264331/94‑1 (MQ=60)
AGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAA > SRR4302533.3864967/1‑94 (MQ=60)
AGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAA < SRR4302533.1834939/94‑1 (MQ=60)
GCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAG < SRR4302533.586232/94‑1 (MQ=60)
CGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGT > SRR4302533.1679617/1‑94 (MQ=60)
CGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGT < SRR4302533.4782686/94‑1 (MQ=60)
CGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGT > SRR4302533.4525943/1‑94 (MQ=60)
CGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGT > SRR4302533.3557674/1‑94 (MQ=60)
GCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTG > SRR4302533.4916265/1‑94 (MQ=60)
GCATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTG < SRR4302533.3628861/94‑1 (MQ=60)
CATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGA > SRR4302533.1277094/1‑94 (MQ=60)
CATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGA < SRR4302533.4974298/94‑1 (MQ=60)
CATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGA > SRR4302533.2044288/1‑94 (MQ=60)
ATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAT > SRR4302533.291235/1‑94 (MQ=60)
ATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAT < SRR4302533.1449051/94‑1 (MQ=60)
ATCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGAT < SRR4302533.5099396/94‑1 (MQ=60)
TCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATT > SRR4302533.695845/1‑94 (MQ=60)
TCCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATT < SRR4302533.4272642/94‑1 (MQ=60)
CCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTC < SRR4302533.5413113/94‑1 (MQ=60)
CCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTC < SRR4302533.2634727/94‑1 (MQ=60)
CCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTC < SRR4302533.3437791/94‑1 (MQ=60)
CCGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTC < SRR4302533.188511/94‑1 (MQ=60)
CGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCG < SRR4302533.4256602/94‑1 (MQ=60)
CGAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCG > SRR4302533.5353118/1‑94 (MQ=60)
GAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGC > SRR4302533.2281122/1‑94 (MQ=60)
GAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGC > SRR4302533.5775397/1‑94 (MQ=60)
GAAAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGC < SRR4302533.597139/94‑1 (MQ=60)
AAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGC > SRR4302533.2681868/1‑94 (MQ=60)
AAGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGC < SRR4302533.5579191/94‑1 (MQ=60)
AGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCG > SRR4302533.4456496/1‑94 (MQ=60)
AGTAACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCG < SRR4302533.2242639/94‑1 (MQ=60)
AACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAG < SRR4302533.4767694/94‑1 (MQ=60)
AACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAG < SRR4302533.4202023/94‑1 (MQ=60)
AACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAG < SRR4302533.290000/94‑1 (MQ=60)
AACGTTACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAG < SRR4302533.2585201/94‑1 (MQ=60)
TACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGT < SRR4302533.2656247/94‑1 (MQ=60)
TACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGT < SRR4302533.3544829/94‑1 (MQ=60)
ACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTG < SRR4302533.2368338/94‑1 (MQ=60)
ACGTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTG > SRR4302533.2919601/1‑94 (MQ=60)
GTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGAT > SRR4302533.5038822/1‑94 (MQ=60)
GTGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGAT > SRR4302533.2529693/1‑94 (MQ=60)
TGTGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATT < SRR4302533.5931114/94‑1 (MQ=60)
TGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGG < SRR4302533.1806104/94‑1 (MQ=60)
TGCCAGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGG < SRR4302533.5140974/94‑1 (MQ=60)
AGGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGAGTGGTGCC > SRR4302533.4491457/1‑94 (MQ=60)
GGCTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCG < SRR4302533.2226987/94‑1 (MQ=60)
CTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGGGCTGAAAGGCGGTGAAGGGATTCGCGCGAAGCTGGTGATTGGTGCCGAC > SRR4302533.6181416/1‑94 (MQ=60)
CTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGAC < SRR4302533.4883055/94‑1 (MQ=60)
CTCACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGAC > SRR4302533.4909456/1‑94 (MQ=60)
CACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGACGG > SRR4302533.2633822/1‑94 (MQ=60)
ACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGACGGC < SRR4302533.3031195/94‑1 (MQ=60)
ACTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGACGGC > SRR4302533.1151345/1‑94 (MQ=60)
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CTTGGCTATATGGTGGAAAACACTGTCCTGCAACAGGCGTTGTGGCAGGCGCTGGAAGCGCATCCGAAAGTAACGTTACGTGTGCCAGGCTCGCTGATTGCGCTGCATCGCCATGATGATCTTCAGGAGCTGGAGCTGAAAGGCGGTGAAGTGATTCGCGCGAAGCTGGTGATTGGTGCCGACGGC > NC_000913/694636‑694821
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
