Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	700,788	A→G	G10G (GGT→GGC)	nagC ←	NagC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	700,788	0	A	G	100.0%	723.8 / NA	219	G10G (GGT→GGC)	nagC	NagC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/103); total (116/103)

Only 100 of 222 total aligned reads displayed.

CTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTACCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAA  >  NC_000913/700698‑700877

 tCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCt                                                                                        >  1:2411522/1‑93 (MQ=255)

 tCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCt                                                                                        <  2:3325004/93‑1 (MQ=255)

  cGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTa                                                                                       <  2:5070962/93‑1 (MQ=255)

  cGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTa                                                                                       <  1:73709/93‑1 (MQ=255)

    gCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATc                                                                                     <  1:4650654/93‑1 (MQ=255)

     cAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCt                                                                                    >  2:3053269/1‑93 (MQ=255)

      aaTCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTAtgtg                                                                                   >  2:3557340/1‑93 (MQ=255)

      aaTCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTg                                                                                   >  2:2746276/1‑93 (MQ=255)

      aaTCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTg                                                                                   <  2:1696765/93‑1 (MQ=255)

       aTCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGa                                                                                  >  2:5319153/1‑93 (MQ=255)

       aTCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGa                                                                                  >  1:5972579/1‑93 (MQ=255)

       aTCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGa                                                                                  >  2:5794482/1‑93 (MQ=255)

        tCTGAATCCGCTAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAg                                                                                 <  1:1298676/93‑1 (MQ=255)

        tCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAg                                                                                 >  2:5084949/1‑93 (MQ=255)

        tCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAg                                                                                 >  1:3910199/1‑93 (MQ=255)

         cTGAATCCGCGAGATGGGCCCGTACTAGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGc                                                                                <  2:1567187/93‑1 (MQ=255)

            aaTCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTg                                                                             <  1:1673298/93‑1 (MQ=255)

              tCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTc                                                                           >  2:3954172/1‑93 (MQ=255)

               ccGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTcc                                                                          >  1:6083995/1‑93 (MQ=255)

                cgcgAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCg                                                                         >  2:2816032/1‑93 (MQ=255)

                   gagaTTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCt                                                                      >  1:5847/1‑93 (MQ=255)

                    agaTTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTg                                                                     <  1:3599356/93‑1 (MQ=255)

                    agaTTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTg                                                                     <  1:2239609/93‑1 (MQ=255)

                     gaTTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTgg                                                                    <  1:4520558/93‑1 (MQ=255)

                         ggCCGGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTc                                                                <  1:6146034/93‑1 (MQ=255)

                           cccGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCAt                                                              <  2:2510741/93‑1 (MQ=255)

                            ccGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATa                                                             >  2:562567/1‑93 (MQ=255)

                             cGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATAc                                                            >  2:2973122/1‑93 (MQ=255)

                              gTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACt                                                           >  1:4431720/1‑93 (MQ=255)

                              gTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACt                                                           >  2:6010934/1‑93 (MQ=255)

                               tACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACtt                                                          >  1:632111/1‑93 (MQ=255)

                                aCTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACttt                                                         <  2:4588655/93‑1 (MQ=255)

                                aCTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACttt                                                         <  1:5821767/93‑1 (MQ=255)

                                aCTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACttt                                                         <  2:5849851/93‑1 (MQ=255)

                                 cTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTtc                                                        <  2:4785170/93‑1 (MQ=255)

                                 cTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTtc                                                        >  1:1016603/1‑93 (MQ=255)

                                  tGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTtct                                                       >  1:633924/1‑93 (MQ=255)

                                  tGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTtct                                                       >  1:207931/1‑93 (MQ=255)

                                  tGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGACCGCCTGGTGTCATACTTtct                                                       <  1:3467890/93‑1 (MQ=255)

                                    gTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTctct                                                     <  1:4915209/93‑1 (MQ=255)

                                    gTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTctct                                                     >  1:5569742/1‑93 (MQ=255)

                                    gTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTctct                                                     <  1:1586556/93‑1 (MQ=255)

                                    gTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTctct                                                     <  2:2120958/93‑1 (MQ=255)

                                      cAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTa                                                   <  1:5030179/93‑1 (MQ=255)

                                       aaTCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTAt                                                  >  2:4933683/1‑93 (MQ=255)

                                        aTCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTAtt                                                 >  2:5686866/1‑93 (MQ=255)

                                         tCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTg                                                <  1:5432560/93‑1 (MQ=255)

                                         tCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTg                                                <  2:3219126/93‑1 (MQ=255)

                                          cAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGa                                               >  1:1276288/1‑93 (MQ=255)

                                           aGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAg                                              <  1:5197825/93‑1 (MQ=255)

                                           aGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAg                                              >  1:4123597/1‑93 (MQ=255)

                                            ggCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGt                                             >  1:1847564/1‑93 (MQ=255)

                                             gCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGtt                                            <  1:1887485/93‑1 (MQ=255)

                                             gCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGtt                                            <  2:3407250/93‑1 (MQ=255)

                                               gATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAc                                          >  1:2901263/1‑93 (MQ=255)

                                               gATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAc                                          >  1:3803615/1‑93 (MQ=255)

                                               gATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAc                                          >  1:427038/1‑93 (MQ=255)

                                                aTAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACg                                         >  1:1779513/1‑93 (MQ=255)

                                                aTAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACg                                         <  1:2835833/93‑1 (MQ=255)

                                                 tAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGa                                        >  1:1440494/1‑93 (MQ=255)

                                                 tAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGa                                        >  1:2706075/1‑93 (MQ=255)

                                                    aCCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCt                                     <  2:427906/93‑1 (MQ=255)

                                                    aCCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCt                                     <  1:3304835/93‑1 (MQ=255)

                                                     ccgccgCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTc                                    >  1:4689558/1‑93 (MQ=255)

                                                     ccgccgCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTc                                    <  2:4661207/93‑1 (MQ=255)

                                                       gccgcGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGt                                  <  1:4196866/93‑1 (MQ=255)

                                                         cgcgCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGCCCTCGttc                                >  2:2524423/1‑92 (MQ=255)

                                                         cgcgCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTa                                >  1:1093805/1‑93 (MQ=255)

                                                          gcgcTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTAc                               <  2:1241084/93‑1 (MQ=255)

                                                          gcgcTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTAc                               >  1:5079222/1‑93 (MQ=255)

                                                          gcgcTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTAc                               >  1:5716747/1‑93 (MQ=255)

                                                            gcTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCg                             >  2:1683161/1‑93 (MQ=255)

                                                              tGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGtt                           >  2:1233522/1‑93 (MQ=255)

                                                               gTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGCGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTCCGACCTCGTTACCGTTa                          >  2:5967496/1‑93 (MQ=255)

                                                               gTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTa                          >  2:2451890/1‑93 (MQ=255)

                                                               gTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTa                          >  2:5404347/1‑93 (MQ=255)

                                                                 tAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAAc                        >  2:5505897/1‑93 (MQ=255)

                                                                  aaGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACg                       >  2:760332/1‑93 (MQ=255)

                                                                  aaGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACg                       <  2:1644977/93‑1 (MQ=255)

                                                                  aaGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACg                       >  1:4007832/1‑93 (MQ=255)

                                                                   aGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGa                      >  1:87733/1‑93 (MQ=255)

                                                                   aGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGa                      <  1:2995590/93‑1 (MQ=255)

                                                                    gCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGAt                     <  2:4201649/93‑1 (MQ=255)

                                                                      tGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGGTACGACCTCGTTACCGTTAACGATgg                   >  1:2170568/1‑93 (MQ=255)

                                                                       gTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGt                  <  2:3917571/93‑1 (MQ=255)

                                                                       gTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGt                  <  2:5803613/93‑1 (MQ=255)

                                                                       gTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGt                  >  1:2542236/1‑93 (MQ=255)

                                                                       gTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGt                  <  1:5693544/93‑1 (MQ=255)

                                                                         tttACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCt                <  1:1981636/93‑1 (MQ=255)

                                                                          ttACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCtt               >  2:5391224/1‑93 (MQ=255)

                                                                           tACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTg              >  1:2093982/1‑93 (MQ=255)

                                                                            aCGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTgg             >  2:4993689/1‑93 (MQ=255)

                                                                             cGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGt            <  1:2647300/93‑1 (MQ=255)

                                                                                gaTCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGAt         <  2:350301/93‑1 (MQ=255)

                                                                                 aTCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGAtt        >  2:1523432/1‑93 (MQ=255)

                                                                                 aTCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGAtt        <  1:2035728/93‑1 (MQ=255)

                                                                                     aCATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTaa    >  1:623509/1‑93 (MQ=255)

                                                                                     aCATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTaa    <  2:2702035/93‑1 (MQ=255)

                                                                                       aTTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAATGATGGTCTTGGTGATTTTaaaa  <  1:5277998/93‑1 (MQ=255)

                                                                                       aTTGCCTAACTGAGCTTGTTCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTaaaa  >  2:6147403/1‑93 (MQ=255)

CTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTACCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAA  >  NC_000913/700698‑700877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGCTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTACCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAATCAG  >  NC_000913/700695‑700881

TTGCTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTG                                                                                               <  SRR4302533.1639592/94‑1 (MQ=60)

  GCTAGACAATCTGATTCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCC                                                                                             <  SRR4302533.2533197/94‑1 (MQ=60)

   CTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCT                                                                                            <  SRR4302533.4014452/94‑1 (MQ=60)

   CTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCT                                                                                            >  SRR4302533.2426415/1‑94 (MQ=60)

     CGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTAT                                                                                          <  SRR4302533.74184/94‑1 (MQ=60)

       GCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCT                                                                                        <  SRR4302533.3036526/94‑1 (MQ=60)

       GCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCT                                                                                        <  SRR4302533.4678831/94‑1 (MQ=60)

        CAATCTGAATCCGCGAGATTGACCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTG                                                                                       >  SRR4302533.515083/1‑94 (MQ=60)

         AATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGA                                                                                      >  SRR4302533.6008729/1‑94 (MQ=60)

          ATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAG                                                                                     >  SRR4302533.3934078/1‑94 (MQ=60)

           TCTGAATCCGCTAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGC                                                                                    <  SRR4302533.1306492/94‑1 (MQ=60)

               AATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGT                                                                                <  SRR4302533.1683411/94‑1 (MQ=60)

                ATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTC                                                                               >  SRR4302533.1980429/1‑94 (MQ=60)

                 TCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCC                                                                              >  SRR4302533.6120780/1‑94 (MQ=60)

                 TCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCC                                                                              <  SRR4302533.63790/94‑1 (MQ=60)

                 TCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCC                                                                              <  SRR4302533.4520213/94‑1 (MQ=60)

                   CGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGC                                                                            >  SRR4302533.4577087/1‑94 (MQ=60)

                   CGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGC                                                                            >  SRR4302533.2108469/1‑94 (MQ=60)

                    GCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCC                                                                           >  SRR4302533.3346831/1‑94 (MQ=60)

                     CGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCT                                                                          >  SRR4302533.5902/1‑94 (MQ=60)

                      GAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTG                                                                         <  SRR4302533.1221653/94‑1 (MQ=60)

                       AGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGG                                                                        >  SRR4302533.2656556/1‑94 (MQ=60)

                       AGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGG                                                                        <  SRR4302533.3621499/94‑1 (MQ=60)

                       AGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGG                                                                        >  SRR4302533.5833693/1‑94 (MQ=60)

                       AGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGG                                                                        <  SRR4302533.2253449/94‑1 (MQ=60)

                        GATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGT                                                                       <  SRR4302533.574375/94‑1 (MQ=60)

                        GATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGT                                                                       <  SRR4302533.4547931/94‑1 (MQ=60)

                           TGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTC                                                                    <  SRR4302533.5920376/94‑1 (MQ=60)

                            GGCCGGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCA                                                                   <  SRR4302533.6183036/94‑1 (MQ=60)

                            GGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCA                                                                   <  SRR4302533.1966952/94‑1 (MQ=60)

                              CCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATA                                                                 >  SRR4302533.4409938/1‑94 (MQ=60)

                               CCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATAC                                                                >  SRR4302533.5030294/1‑94 (MQ=60)

                               CCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATAC                                                                >  SRR4302533.787812/1‑94 (MQ=60)

                                CGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACT                                                               >  SRR4302533.4458511/1‑94 (MQ=60)

                                CGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACT                                                               <  SRR4302533.1866469/94‑1 (MQ=60)

                                 GTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTT                                                              >  SRR4302533.4740096/1‑94 (MQ=60)

                                 GTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTT                                                              >  SRR4302533.2747272/1‑94 (MQ=60)

                                 GTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTT                                                              >  SRR4302533.635831/1‑94 (MQ=60)

                                   ACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTC                                                            <  SRR4302533.5856930/94‑1 (MQ=60)

                                   ACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTC                                                            >  SRR4302533.1022578/1‑94 (MQ=60)

                                    CTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCT                                                           >  SRR4302533.637654/1‑94 (MQ=60)

                                    CTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCT                                                           >  SRR4302533.209248/1‑94 (MQ=60)

                                     TGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTC                                                          >  SRR4302533.6231516/1‑94 (MQ=60)

                                     TGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGACCGCCTGGTGTCATACTTTCTC                                                          <  SRR4302533.3489297/94‑1 (MQ=60)

                                      GGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCT                                                         >  SRR4302533.5603407/1‑94 (MQ=60)

                                       GTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTT                                                        <  SRR4302533.1596119/94‑1 (MQ=60)

                                       GTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTT                                                        <  SRR4302533.4944983/94‑1 (MQ=60)

                                         CAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTAT                                                      <  SRR4302533.5060635/94‑1 (MQ=60)

                                          AATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATT                                                     <  SRR4302533.1519747/94‑1 (MQ=60)

                                          AATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATT                                                     >  SRR4302533.4700072/1‑94 (MQ=60)

                                           ATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTG                                                    >  SRR4302533.4211218/1‑94 (MQ=60)

                                            TCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGA                                                   >  SRR4302533.1283960/1‑94 (MQ=60)

                                            TCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGA                                                   <  SRR4302533.5465275/94‑1 (MQ=60)

                                             CAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAG                                                  >  SRR4302533.4148633/1‑94 (MQ=60)

                                             CAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAG                                                  >  SRR4302533.94748/1‑94 (MQ=60)

                                              AGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGT                                                 >  SRR4302533.1858831/1‑94 (MQ=60)

                                              AGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGT                                                 <  SRR4302533.5229172/94‑1 (MQ=60)

                                              AGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGGCATACTTTCTCTTATTGAGT                                                 >  SRR4302533.3124822/1‑94 (MQ=60)

                                                GCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTA                                               <  SRR4302533.1899012/94‑1 (MQ=60)

                                                 CGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAC                                              >  SRR4302533.3826890/1‑94 (MQ=60)

                                                 CGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAC                                              >  SRR4302533.429586/1‑94 (MQ=60)

                                                 CGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAC                                              <  SRR4302533.1707241/94‑1 (MQ=60)

                                                 CGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAC                                              >  SRR4302533.2919086/1‑94 (MQ=60)

                                                 CGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAC                                              <  SRR4302533.5371618/94‑1 (MQ=60)

                                                 CGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTAC                                              <  SRR4302533.5321037/94‑1 (MQ=60)

                                                  GATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTctttcgctacc                                             >  SRR4302533.1790349/1‑83 (MQ=60)

                                                  GATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACG                                             >  SRR4302533.1790348/1‑94 (MQ=60)

                                                  GATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACG                                             <  SRR4302533.2274490/94‑1 (MQ=60)

                                                   ATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGA                                            <  SRR4302533.289872/94‑1 (MQ=60)

                                                   ATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGA                                            <  SRR4302533.2853283/94‑1 (MQ=60)

                                                   ATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGA                                            >  SRR4302533.2722672/1‑94 (MQ=60)

                                                   ATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGA                                            >  SRR4302533.1449184/1‑94 (MQ=60)

                                                     AAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACC                                          >  SRR4302533.6092177/1‑94 (MQ=60)

                                                     AAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACC                                          <  SRR4302533.724278/94‑1 (MQ=60)

                                                      AACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCT                                         <  SRR4302533.566354/94‑1 (MQ=60)

                                                       ACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTC                                        >  SRR4302533.4717988/1‑94 (MQ=60)

                                                       ACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTC                                        <  SRR4302533.1064789/94‑1 (MQ=60)

                                                       ACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTC                                        >  SRR4302533.2433866/1‑94 (MQ=60)

                                                       ACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTC                                        <  SRR4302533.3325243/94‑1 (MQ=60)

                                                       ACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTC                                        <  SRR4302533.1322454/94‑1 (MQ=60)

                                                          GCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTT                                     <  SRR4302533.4222273/94‑1 (MQ=60)

                                                          GCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGGGTCATACTTTCTCTTATTGAGTTACGACCTCGTT                                     >  SRR4302533.205005/1‑94 (MQ=60)

                                                           CCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTA                                    >  SRR4302533.1100278/1‑94 (MQ=60)

                                                           CCGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTA                                    <  SRR4302533.1810028/94‑1 (MQ=60)

                                                            CGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTAC                                   >  SRR4302533.5751272/1‑94 (MQ=60)

                                                            CGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTAC                                   >  SRR4302533.5109919/1‑94 (MQ=60)

                                                            CGCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTATCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTAC                                   >  SRR4302533.2674982/1‑94 (MQ=60)

                                                             GCGCTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACC                                  >  SRR4302533.1290920/1‑94 (MQ=60)

                                                                CTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTT                               >  SRR4302533.624628/1‑94 (MQ=60)

                                                                CTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTT                               >  SRR4302533.2046849/1‑94 (MQ=60)

                                                                CTGTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTT                               >  SRR4302533.5864112/1‑94 (MQ=60)

                                                                  GTTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAA                             >  SRR4302533.4109491/1‑94 (MQ=60)

                                                                   TTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAAC                            <  SRR4302533.6331632/94‑1 (MQ=60)

                                                                   TTAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAAC                            >  SRR4302533.5282361/1‑94 (MQ=60)

                                                                    TAAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACG                           >  SRR4302533.4032234/1‑94 (MQ=60)

                                                                     AAGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGA                          >  SRR4302533.88294/1‑94 (MQ=60)

                                                                      AGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGAT                         <  SRR4302533.3013909/94‑1 (MQ=60)

                                                                      AGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGAT                         <  SRR4302533.2160290/94‑1 (MQ=60)

                                                                      AGCTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGAT                         <  SRR4302533.2100056/94‑1 (MQ=60)

                                                                        CTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGG                       >  SRR4302533.300534/1‑94 (MQ=60)

                                                                        CTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGG                       >  SRR4302533.4956532/1‑94 (MQ=60)

                                                                        CTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGG                       >  SRR4302533.4270607/1‑94 (MQ=60)

                                                                        CTGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGGTACGACCTCGTTACCGTTAACGATGG                       >  SRR4302533.2183916/1‑94 (MQ=60)

                                                                         TGTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGT                      >  SRR4302533.2557884/1‑94 (MQ=60)

                                                                          GTTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTC                     <  SRR4302533.5727926/94‑1 (MQ=60)

                                                                           TTTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCT                    <  SRR4302533.5596744/94‑1 (MQ=60)

                                                                            TTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACTACCTCGTTACCGTTAACGATGGTCTT                   <  SRR4302533.1596349/94‑1 (MQ=60)

                                                                            TTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTT                   <  SRR4302533.3536001/94‑1 (MQ=60)

                                                                            TTTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTT                   <  SRR4302533.1993765/94‑1 (MQ=60)

                                                                             TTACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTG                  >  SRR4302533.2106877/1‑94 (MQ=60)

                                                                              TACGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGG                 <  SRR4302533.2695472/94‑1 (MQ=60)

                                                                                CGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTG               <  SRR4302533.4325314/94‑1 (MQ=60)

                                                                                CGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTG               <  SRR4302533.3838876/94‑1 (MQ=60)

                                                                                CGAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTG               <  SRR4302533.2663565/94‑1 (MQ=60)

                                                                                 GAGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGA              <  SRR4302533.5067233/94‑1 (MQ=60)

                                                                                  AGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGAT             >  SRR4302533.1589811/1‑94 (MQ=60)

                                                                                  AGATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGAT             <  SRR4302533.5859387/94‑1 (MQ=60)

                                                                                    ATCAACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTT           <  SRR4302533.2048281/94‑1 (MQ=60)

                                                                                    ATCAACATTGCCTATCTGAGCTTGTCCGCCTGGCGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGCTTT           >  SRR4302533.6179352/1‑94 (MQ=60)

                                                                                       AACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAA        >  SRR4302533.627171/1‑94 (MQ=60)

                                                                                        ACATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAA       <  SRR4302533.3678136/94‑1 (MQ=60)

                                                                                         CATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAA      >  SRR4302533.2215429/1‑94 (MQ=60)

                                                                                          ATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAATGATGGTCTTGGTGATTTTAAAAT     <  SRR4302533.5309636/94‑1 (MQ=60)

                                                                                          ATTGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAAT     <  SRR4302533.3978279/94‑1 (MQ=60)

                                                                                            TGCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAATCA   <  SRR4302533.3335020/94‑1 (MQ=60)

                                                                                             GCCTATCTGAGCTTGTCCTCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAATCAG  <  SRR4302533.3034552/94‑1 (MQ=60)

                                                                                             GCCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAATCAG  <  SRR4302533.4482325/94‑1 (MQ=60)

TTGCTCGGCAATCTGAATCCGCGAGATTGGCCCGTACTGGTCAATCAGGCGATAAACCGCCGCGCTGTTAAGCTGTTTTACGAGATCAACATTACCTATCTGAGCTTGTCCGCCTGGTGTCATACTTTCTCTTATTGAGTTACGACCTCGTTACCGTTAACGATGGTCTTGGTGATTTTAAAATCAG  >  NC_000913/700695‑700881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`