Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 709,765 A→G S35S (AGT→AGC)  fur ← Fur

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913709,7650AG100.0% 719.0 / NA 218S35S (AGT→AGC) furFur
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (100/118);  total (100/118)

Only 100 of 224 total aligned reads displayed.

AGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGT  >  NC_000913/709675‑709854
                                                                                          |                                                                                         
aGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCt                                                                                         >  2:1841183/1‑93 (MQ=255)
aGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCt                                                                                         <  2:6045255/93‑1 (MQ=255)
 gCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTg                                                                                        <  2:4222833/93‑1 (MQ=255)
   gtcgtcAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGAc                                                                                      >  2:4125556/1‑93 (MQ=255)
    tcgtcAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACg                                                                                     >  1:4982744/1‑93 (MQ=255)
    tcgtcAAACTGGTTCAGTACGCGATATACAGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACg                                                                                     >  1:2083788/1‑93 (MQ=255)
         aaaCTGGGTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATg                                                                                >  2:5985766/1‑93 (MQ=255)
           aCTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGt                                                                              <  2:5078566/93‑1 (MQ=255)
           aCTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGt                                                                              <  1:5141470/93‑1 (MQ=255)
           aCTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGt                                                                              <  1:240458/93‑1 (MQ=255)
           aCTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGt                                                                              >  1:2426080/1‑93 (MQ=255)
             tGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTg                                                                            <  2:3290035/93‑1 (MQ=255)
              ggTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGt                                                                           >  1:1632633/1‑93 (MQ=255)
                ttCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTcc                                                                         >  1:744712/1‑93 (MQ=255)
                 tCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCg                                                                        >  2:4562138/1‑93 (MQ=255)
                  cAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCgg                                                                       >  1:4967765/1‑93 (MQ=255)
                   aGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGc                                                                      <  2:365991/93‑1 (MQ=255)
                    gTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCt                                                                     >  2:929041/1‑93 (MQ=255)
                    gTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCt                                                                     >  1:6097209/1‑93 (MQ=255)
                      aCGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTcc                                                                   <  1:1399176/93‑1 (MQ=255)
                       cgcgATATACTGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCTGCTCCt                                                                  <  2:3567970/93‑1 (MQ=255)
                        gcgATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTg                                                                 <  1:434606/93‑1 (MQ=255)
                         cgATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTga                                                                <  1:3043206/93‑1 (MQ=255)
                         cgATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTga                                                                <  2:670289/93‑1 (MQ=255)
                         cgATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTga                                                                <  1:3179567/93‑1 (MQ=255)
                          ggtataCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaa                                                               >  2:5011604/3‑93 (MQ=255)
                          gATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaa                                                               >  2:5586160/1‑93 (MQ=255)
                          gATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaa                                                               <  1:2307472/93‑1 (MQ=255)
                          gATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaa                                                               >  2:5500921/1‑93 (MQ=255)
                          catatACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaa                                                               <  1:5723466/92‑1 (MQ=255)
                            tataCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaaga                                                             <  2:2240747/93‑1 (MQ=255)
                            tataCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaaga                                                             >  1:2941938/1‑93 (MQ=255)
                            tataCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTgaaga                                                             >  2:1470068/1‑93 (MQ=255)
                              taCCGTAGCCAGAACATTTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAAc                                                           <  1:2893904/93‑1 (MQ=255)
                               aCCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACt                                                          <  2:5507550/93‑1 (MQ=255)
                                 cGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTc                                                        <  2:3503737/93‑1 (MQ=255)
                                 cGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTc                                                        <  2:6235331/93‑1 (MQ=255)
                                  gTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTcc                                                       <  2:2722100/93‑1 (MQ=255)
                                  gTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTcc                                                       <  2:75569/93‑1 (MQ=255)
                                  gTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTcc                                                       <  1:116593/93‑1 (MQ=255)
                                   tAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCa                                                      >  1:520030/1‑93 (MQ=255)
                                       cAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAt                                                  >  1:5467318/1‑93 (MQ=255)
                                       cAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAt                                                  >  1:1082096/1‑93 (MQ=255)
                                        aGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAtt                                                 >  2:2983412/1‑93 (MQ=255)
                                        aGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAtt                                                 >  2:4390024/1‑93 (MQ=255)
                                         gACCAATTTCTTCACCCATATCGATCAGACGGTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAttt                                                >  2:4586712/1‑93 (MQ=255)
                                          aCCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAtttt                                               >  1:2644418/1‑93 (MQ=255)
                                          aCCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGAAGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAtttt                                               >  1:2685075/1‑93 (MQ=255)
                                          aCCAATGTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAtttt                                               <  2:2814339/93‑1 (MQ=255)
                                            cAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTa                                             >  1:4037866/1‑93 (MQ=255)
                                             aaTTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTaa                                            <  2:5162474/93‑1 (MQ=255)
                                              aTTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTaaa                                           <  1:379973/93‑1 (MQ=255)
                                               tttCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAAc                                          <  2:2011208/93‑1 (MQ=255)
                                                     cACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGaa                                    >  1:895690/1‑93 (MQ=255)
                                                       cccATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGc                                  <  2:6107867/93‑1 (MQ=255)
                                                       cccATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGc                                  <  2:3403476/93‑1 (MQ=255)
                                                       cccATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGc                                  >  1:5663420/1‑93 (MQ=255)
                                                        ccATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCg                                 >  2:2325988/1‑93 (MQ=255)
                                                          atatCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGtt                               >  2:3924728/1‑93 (MQ=255)
                                                          atatCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGtt                               <  2:3118673/93‑1 (MQ=255)
                                                           tatCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTa                              <  2:5221112/93‑1 (MQ=255)
                                                            atCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTAc                             >  2:3711612/1‑93 (MQ=255)
                                                            atCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTAc                             <  1:5488691/93‑1 (MQ=255)
                                                            atCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTAc                             >  1:544662/1‑93 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         <  2:2345418/93‑1 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         >  1:5887727/1‑93 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         <  1:3521518/93‑1 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         >  1:4759099/1‑93 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         >  1:3569102/1‑93 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         <  1:1943788/93‑1 (MQ=255)
                                                                aTCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTc                         <  1:5266544/93‑1 (MQ=255)
                                                                 tCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCa                        >  1:2447584/1‑93 (MQ=255)
                                                                 tCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCa                        <  1:658586/93‑1 (MQ=255)
                                                                   aGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAgg                      <  1:3314420/93‑1 (MQ=255)
                                                                    gACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGc                     >  1:3641766/1‑93 (MQ=255)
                                                                    gACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGc                     <  1:4950404/93‑1 (MQ=255)
                                                                       gTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAg                  >  2:5816521/1‑93 (MQ=255)
                                                                          tGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctt               >  2:5297926/1‑93 (MQ=255)
                                                                           gTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGcttt              >  2:4766248/1‑93 (MQ=255)
                                                                            tataAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc             <  2:1199037/93‑1 (MQ=255)
                                                                            tataAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc             >  1:6270948/1‑93 (MQ=255)
                                                                            tataAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc             <  1:419281/93‑1 (MQ=255)
                                                                            tataAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc             >  1:440455/1‑93 (MQ=255)
                                                                            tataAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc             <  1:1826799/93‑1 (MQ=255)
                                                                            tataAATCGTCCGCGGTGCCGTGATGGGTGGCCGGCTCGTGAAGAACGTCCAGGATGTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc             <  1:2794830/93‑1 (MQ=255)
                                                                             ataAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttct            <  1:6019031/93‑1 (MQ=255)
                                                                              taAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttctt           >  2:317098/1‑93 (MQ=255)
                                                                              taAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttctt           >  1:1293281/1‑93 (MQ=255)
                                                                                aaTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTa         <  2:4819805/93‑1 (MQ=255)
                                                                                aaTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTa         <  1:5741612/93‑1 (MQ=255)
                                                                                aaTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTa         >  2:5409160/1‑93 (MQ=255)
                                                                                aaTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTa         <  1:538767/93‑1 (MQ=255)
                                                                                aaTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTa         <  2:219819/93‑1 (MQ=255)
                                                                                 aTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAg        <  2:1018962/93‑1 (MQ=255)
                                                                                 aTCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAg        >  1:5583816/1‑93 (MQ=255)
                                                                                  tCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAgg       <  1:4675304/93‑1 (MQ=255)
                                                                                  tCTTCCGCGCTGACGTGATGGGTGTCCCGCTCCTGAAGAACTTCCAGGATTCTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAgg       >  1:5120777/1‑93 (MQ=255)
                                                                                     tCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCg    >  1:1232091/1‑93 (MQ=255)
                                                                                      ccGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCgg   <  2:5353562/93‑1 (MQ=255)
                                                                                       cgcgCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGGCAGCTTTCTTTAGGGCgga  >  1:5802872/1‑92 (MQ=255)
                                                                                          |                                                                                         
AGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGT  >  NC_000913/709675‑709854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTG  >  NC_000913/709673‑709858
                                                                                            |                                                                                             
CCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGC                                                                                              >  SRR4302533.5892223/1‑94 (MQ=60)
CCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGC                                                                                              >  SRR4302533.72848/1‑94 (MQ=60)
    CGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGAC                                                                                          <  SRR4302533.582356/94‑1 (MQ=60)
    CGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGAC                                                                                          <  SRR4302533.2389620/94‑1 (MQ=60)
    CGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGAC                                                                                          >  SRR4302533.2730522/1‑94 (MQ=60)
     GTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACG                                                                                         >  SRR4302533.5012956/1‑94 (MQ=60)
     GTCGTCAAACTGGTTCAGTACGCGATATACAGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACG                                                                                         >  SRR4302533.2096618/1‑94 (MQ=60)
          CAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATG                                                                                    <  SRR4302533.12388/94‑1 (MQ=60)
          CAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATG                                                                                    >  SRR4302533.592025/1‑94 (MQ=60)
           AAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGG                                                                                   >  SRR4302533.2603864/1‑94 (MQ=60)
            AACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGT                                                                                  >  SRR4302533.2441078/1‑94 (MQ=60)
             ACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTT                                                                                 <  SRR4302533.241950/94‑1 (MQ=60)
             ACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTT                                                                                 <  SRR4302533.5172543/94‑1 (MQ=60)
               TGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGT                                                                               >  SRR4302533.631489/1‑94 (MQ=60)
               TGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGT                                                                               >  SRR4302533.1642523/1‑94 (MQ=60)
               TGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGT                                                                               <  SRR4302533.5764266/94‑1 (MQ=60)
                GGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTC                                                                              >  SRR4302533.5159540/1‑94 (MQ=60)
                 GTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCC                                                                             >  SRR4302533.2421983/1‑94 (MQ=60)
                 GTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCC                                                                             >  SRR4302533.749096/1‑94 (MQ=60)
                 GTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCC                                                                             <  SRR4302533.1424390/94‑1 (MQ=60)
                  TTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCG                                                                            >  SRR4302533.2254597/1‑94 (MQ=60)
                  TTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCG                                                                            >  SRR4302533.2928045/1‑94 (MQ=60)
                   TCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGG                                                                           >  SRR4302533.4997886/1‑94 (MQ=60)
                     AGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCT                                                                         <  SRR4302533.2261267/94‑1 (MQ=60)
                     AGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCT                                                                         >  SRR4302533.6134034/1‑94 (MQ=60)
                      GTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTC                                                                        <  SRR4302533.1258759/94‑1 (MQ=60)
                        ACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCT                                                                      <  SRR4302533.1407609/94‑1 (MQ=60)
                          GCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGA                                                                    <  SRR4302533.437196/94‑1 (MQ=60)
                           CGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAA                                                                   <  SRR4302533.3199126/94‑1 (MQ=60)
                           CGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAA                                                                   <  SRR4302533.3061835/94‑1 (MQ=60)
                            GATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAG                                                                  <  SRR4302533.2321766/94‑1 (MQ=60)
                            GATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAG                                                                  <  SRR4302533.4489390/94‑1 (MQ=60)
                            CATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAG                                                                  <  SRR4302533.5758019/94‑1 (MQ=60)
                             ATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGA                                                                 >  SRR4302533.3560660/1‑94 (MQ=60)
                             ATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGA                                                                 >  SRR4302533.2959903/1‑94 (MQ=60)
                             ATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGA                                                                 <  SRR4302533.1133958/94‑1 (MQ=60)
                                TACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACT                                                              <  SRR4302533.5073174/94‑1 (MQ=60)
                                TACCGTAGCCAGAACATTTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACT                                                              <  SRR4302533.2911686/94‑1 (MQ=60)
                                   CGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCC                                                           <  SRR4302533.245027/94‑1 (MQ=60)
                                   CGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCC                                                           <  SRR4302533.594222/94‑1 (MQ=60)
                                    GTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCA                                                          <  SRR4302533.117336/94‑1 (MQ=60)
                                    GTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCA                                                          >  SRR4302533.523118/1‑94 (MQ=60)
                                     TAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAG                                                         <  SRR4302533.4745975/94‑1 (MQ=60)
                                      AGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGG                                                        >  SRR4302533.6115042/1‑94 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      <  SRR4302533.5091247/94‑1 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      >  SRR4302533.5500270/1‑94 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      >  SRR4302533.1088480/1‑94 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      >  SRR4302533.5613611/1‑94 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      >  SRR4302533.5738418/1‑94 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      <  SRR4302533.2823508/94‑1 (MQ=60)
                                        CCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTAATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAT                                                      <  SRR4302533.4812132/94‑1 (MQ=60)
                                          AGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTT                                                    >  SRR4302533.5333711/1‑94 (MQ=60)
                                          AGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTT                                                    <  SRR4302533.5668422/94‑1 (MQ=60)
                                          AGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTT                                                    <  SRR4302533.3853921/94‑1 (MQ=60)
                                           GACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTT                                                   >  SRR4302533.2660666/1‑94 (MQ=60)
                                           GACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGAAGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTT                                                   >  SRR4302533.2701529/1‑94 (MQ=60)
                                             CCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTA                                                 >  SRR4302533.4062437/1‑94 (MQ=60)
                                               AATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAA                                               <  SRR4302533.1723802/94‑1 (MQ=60)
                                                ATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAAC                                              <  SRR4302533.382262/94‑1 (MQ=60)
                                                 TTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCATGATTTTTAAACG                                             >  SRR4302533.1619270/1‑94 (MQ=60)
                                                    CTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGG                                          >  SRR4302533.2921089/1‑94 (MQ=60)
                                                    CTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGG                                          <  SRR4302533.50098/94‑1 (MQ=60)
                                                     TTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGA                                         <  SRR4302533.5813855/94‑1 (MQ=60)
                                                     TTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGA                                         <  SRR4302533.3469978/94‑1 (MQ=60)
                                                      TCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAA                                        >  SRR4302533.900951/1‑94 (MQ=60)
                                                       CACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAG                                       >  SRR4302533.6292538/1‑94 (MQ=60)
                                                        ACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGC                                      <  SRR4302533.2962846/94‑1 (MQ=60)
                                                        ACCCATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGC                                      >  SRR4302533.5697638/1‑94 (MQ=60)
                                                           CATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTT                                   <  SRR4302533.6145516/94‑1 (MQ=60)
                                                            ATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTA                                  >  SRR4302533.5462439/1‑94 (MQ=60)
                                                            ATATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTA                                  <  SRR4302533.4980901/94‑1 (MQ=60)
                                                             TATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTAC                                 >  SRR4302533.547894/1‑94 (MQ=60)
                                                              ATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACT                                >  SRR4302533.5378677/1‑94 (MQ=60)
                                                              ATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACT                                >  SRR4302533.3310066/1‑94 (MQ=60)
                                                              ATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACT                                <  SRR4302533.1838272/94‑1 (MQ=60)
                                                              ATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACT                                <  SRR4302533.5521779/94‑1 (MQ=60)
                                                              ATCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACT                                <  SRR4302533.4285708/94‑1 (MQ=60)
                                                               TCGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTT                               <  SRR4302533.3692515/94‑1 (MQ=60)
                                                                CGATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTT                              >  SRR4302533.2576847/1‑94 (MQ=60)
                                                                 GATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTC                             >  SRR4302533.5923299/1‑94 (MQ=60)
                                                                 GATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTC                             >  SRR4302533.3591100/1‑94 (MQ=60)
                                                                 GATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTC                             >  SRR4302533.881125/1‑94 (MQ=60)
                                                                 GATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTC                             >  SRR4302533.4787970/1‑94 (MQ=60)
                                                                  ATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCA                            >  SRR4302533.2462688/1‑94 (MQ=60)
                                                                  ATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCA                            <  SRR4302533.5298144/94‑1 (MQ=60)
                                                                  ATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCA                            <  SRR4302533.3543226/94‑1 (MQ=60)
                                                                  ATCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCA                            <  SRR4302533.1955645/94‑1 (MQ=60)
                                                                   TCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAG                           <  SRR4302533.525325/94‑1 (MQ=60)
                                                                   TCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAG                           <  SRR4302533.738817/94‑1 (MQ=60)
                                                                   TCAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAG                           <  SRR4302533.662467/94‑1 (MQ=60)
                                                                    CAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGG                          >  SRR4302533.3104694/1‑94 (MQ=60)
                                                                    CAGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGG                          <  SRR4302533.2016851/94‑1 (MQ=60)
                                                                     AGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGC                         <  SRR4302533.3334883/94‑1 (MQ=60)
                                                                     AGACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGC                         >  SRR4302533.3664160/1‑94 (MQ=60)
                                                                      GACGTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCC                        <  SRR4302533.4980387/94‑1 (MQ=60)
                                                                         GTTTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGC                     >  SRR4302533.5612340/1‑94 (MQ=60)
                                                                           TTGTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGACAGCTT                   >  SRR4302533.1384452/1‑94 (MQ=60)
                                                                             GTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTC                 >  SRR4302533.443086/1‑94 (MQ=60)
                                                                             GTATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTC                 >  SRR4302533.6308409/1‑94 (MQ=60)
                                                                              TATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCT                <  SRR4302533.1837957/94‑1 (MQ=60)
                                                                              TATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCT                >  SRR4302533.90265/1‑94 (MQ=60)
                                                                              TATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCT                <  SRR4302533.421794/94‑1 (MQ=60)
                                                                              TATAAATCGTCCGCGGTGCCGTGATGGGTGGCCGGCTCGTGAAGAACGTCCAGGATGTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCT                <  SRR4302533.2812018/94‑1 (MQ=55)
                                                                               ATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTT               <  SRR4302533.6055505/94‑1 (MQ=60)
                                                                               ATAAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTT               >  SRR4302533.1301071/1‑94 (MQ=60)
                                                                                 AAATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTA             >  SRR4302533.3352876/1‑94 (MQ=60)
                                                                                  AATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAG            >  SRR4302533.5617556/1‑94 (MQ=60)
                                                                                  AATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAG            <  SRR4302533.5776261/94‑1 (MQ=60)
                                                                                  AATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAG            <  SRR4302533.2692275/94‑1 (MQ=60)
                                                                                  AATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAG            <  SRR4302533.541970/94‑1 (MQ=60)
                                                                                  AATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAG            >  SRR4302533.439405/1‑94 (MQ=60)
                                                                                   ATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGG           <  SRR4302533.3611117/94‑1 (MQ=60)
                                                                                   ATCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGG           >  SRR4302533.410780/1‑94 (MQ=60)
                                                                                   ATCTTCCGCGCTGACGTGATGGGTGTCCCGCTCCTGAAGAACTTCCAGGATTCTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGG           >  SRR4302533.5151714/1‑94 (MQ=60)
                                                                                    TCTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGG          <  SRR4302533.4703636/94‑1 (MQ=60)
                                                                                     CTTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGC         >  SRR4302533.5220459/1‑94 (MQ=60)
                                                                                      TTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCG        <  SRR4302533.4748863/94‑1 (MQ=60)
                                                                                      TTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCG        >  SRR4302533.1239465/1‑94 (MQ=60)
                                                                                      TTCCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCG        <  SRR4302533.5504110/94‑1 (MQ=60)
                                                                                        CCGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGGCAGCTTTCTTTAGGGCGGA      >  SRR4302533.5837923/1‑94 (MQ=60)
                                                                                         CGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTA     <  SRR4302533.5504/94‑1 (MQ=60)
                                                                                         CGCGCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTA     <  SRR4302533.3970668/94‑1 (MQ=60)
                                                                                            GCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTG  <  SRR4302533.1078253/94‑1 (MQ=60)
                                                                                            |                                                                                             
CCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTG  >  NC_000913/709673‑709858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑