Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 709,880 T→C intergenic (‑11/+278) fur ← / ← fldA Fur/flavodoxin 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913709,8800TC99.1% 1453.5 / ‑0.4 451intergenic (‑11/+278)fur/fldAFur/flavodoxin 1
Reads supporting (aligned to +/- strand):  ref base T (1/3);  new base C (257/190);  total (258/193)
Fisher's exact test for biased strand distribution p-value = 3.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.27e-01

Only 100 of 470 total aligned reads displayed.

TGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAA  >  NC_000913/709790‑709969
                                                                                          |                                                                                         
tGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGccc                                                                                         <  2:3147355/93‑1 (MQ=255)
   agaaCTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGt                                                                                      <  1:1759641/93‑1 (MQ=255)
   agaaCTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGt                                                                                      <  2:2233188/93‑1 (MQ=255)
    gaaCTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGtt                                                                                     >  1:3375184/1‑93 (MQ=255)
     aaCTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTa                                                                                    <  2:6274363/93‑1 (MQ=255)
      aCTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAc                                                                                   >  2:1491897/1‑93 (MQ=255)
       cTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACt                                                                                  >  1:347216/1‑93 (MQ=255)
        ttCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTa                                                                                 >  1:724270/1‑93 (MQ=255)
        ttCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTa                                                                                 >  1:2358986/1‑93 (MQ=255)
         tCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGACTCTGCCCTGTTACTac                                                                                >  1:2475704/1‑92 (MQ=255)
         tCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTaa                                                                                >  2:7406547/1‑93 (MQ=255)
          ccAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAg                                                                               <  2:4740405/93‑1 (MQ=255)
            aGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCg                                                                             <  2:3585797/93‑1 (MQ=255)
            aGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCg                                                                             >  2:9156209/1‑93 (MQ=255)
            aGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGAAATCTGTCCTGTTACTAAGCg                                                                             <  2:2081745/93‑1 (MQ=255)
             ggATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCgg                                                                            >  1:9312134/1‑93 (MQ=255)
              gATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGt                                                                           >  1:5950837/1‑93 (MQ=255)
               aTTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGtt                                                                          >  2:2727576/1‑93 (MQ=255)
               aTTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGtt                                                                          >  2:8344151/1‑93 (MQ=255)
                tttttAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTc                                                                         >  2:4597020/1‑93 (MQ=255)
                tttttAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTc                                                                         >  2:8763783/1‑93 (MQ=255)
                  tttAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCAc                                                                       <  1:4274938/93‑1 (MQ=255)
                     aaaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAGGCGGTTCAtttt                                                                    >  2:8499904/1‑92 (MQ=255)
                     aaaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTc                                                                    >  2:7050406/1‑93 (MQ=255)
                     aaaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTc                                                                    <  1:7618068/93‑1 (MQ=255)
                      aaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCa                                                                   <  2:4887738/93‑1 (MQ=255)
                      aaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTct                                                                   >  2:2425894/1‑92 (MQ=255)
                      aaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCa                                                                   <  1:2911830/93‑1 (MQ=255)
                      aaCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCa                                                                   >  1:8863192/1‑93 (MQ=255)
                       aCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCAt                                                                  >  1:9643919/1‑93 (MQ=255)
                       aCGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCAt                                                                  >  2:8221832/1‑93 (MQ=255)
                         gAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTTACTTCATTa                                                                >  1:6721807/1‑93 (MQ=255)
                         gAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTa                                                                >  1:6366742/1‑93 (MQ=255)
                         gAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTa                                                                >  2:4058959/1‑93 (MQ=255)
                         gAGGAAGCGTTACTTTCACGCCAGCTTTCCTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGACCTGTTACTAAGCGGTTCACTTCATTa                                                                >  2:1651405/1‑93 (MQ=255)
                          aGGAAGCGTTACTTTCAGGCCATCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGTATCTGCCCTGTTACTAAGCGGTTCACTTCATTag                                                               >  1:7686412/1‑93 (MQ=255)
                          aGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTag                                                               >  2:9722298/1‑93 (MQ=255)
                          aGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTag                                                               <  1:9853404/93‑1 (MQ=255)
                          aGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTag                                                               >  1:4413946/1‑93 (MQ=255)
                             aaGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTagaag                                                            >  2:782244/1‑93 (MQ=255)
                              aGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTagaaga                                                           <  1:9430786/93‑1 (MQ=255)
                              aGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTagaaga                                                           >  2:9365653/1‑93 (MQ=255)
                               gCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAgaagaa                                                          >  2:2797385/1‑93 (MQ=255)
                               gCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAgaagaa                                                          <  2:6751199/93‑1 (MQ=255)
                                 gTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGt                                                        >  2:1171458/1‑93 (MQ=255)
                                  ttACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTg                                                       >  1:5011829/1‑93 (MQ=255)
                                  ttACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTg                                                       <  1:5483109/93‑1 (MQ=255)
                                   tACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGa                                                      >  2:5261600/1‑93 (MQ=255)
                                      tttCAGGCCAGCTTTCTTTAGGGCGGTGTTGTTATCAGTCATGCGGTATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAg                                                   >  2:3879673/1‑93 (MQ=255)
                                       ttCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGa                                                  >  2:3948851/1‑93 (MQ=255)
                                       ttCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGa                                                  >  1:2564508/1‑93 (MQ=255)
                                        tCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGaa                                                 <  2:5159470/93‑1 (MQ=255)
                                          aGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAAtt                                               <  2:2992712/93‑1 (MQ=255)
                                            gCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTg                                             >  1:1112048/1‑93 (MQ=255)
                                             ccAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGc                                            <  1:603192/93‑1 (MQ=255)
                                              cAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGct                                           >  1:8018623/1‑93 (MQ=255)
                                               aGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctc                                          <  1:1461648/93‑1 (MQ=255)
                                               aGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGCTTCACTTCATTAGAAGAAGTGACAGAATTTGctc                                          >  1:9519919/1‑93 (MQ=255)
                                                gCTTTCTTTAGGGCGGTATTGTTATGAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctct                                         <  2:5042703/93‑1 (MQ=255)
                                                gCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctct                                         <  2:7758465/93‑1 (MQ=255)
                                                gCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctct                                         >  2:5465534/1‑93 (MQ=255)
                                                gCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctct                                         <  1:5694017/93‑1 (MQ=255)
                                                gCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctct                                         <  2:1391285/93‑1 (MQ=255)
                                                gCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGctct                                         <  1:10022036/93‑1 (MQ=255)
                                                gCTTTCTTTAGGGCGGAATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGCGACAGAATTTGctct                                         >  1:9078372/1‑93 (MQ=255)
                                                  tttctttAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTg                                       <  1:7880636/93‑1 (MQ=255)
                                                   ttctttAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTga                                      >  1:8427852/1‑93 (MQ=255)
                                                    tctttAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTgag                                     >  1:3598408/1‑93 (MQ=255)
                                                       ttAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATa                                  <  2:7497479/93‑1 (MQ=255)
                                                       ttAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATa                                  >  2:9480783/1‑93 (MQ=255)
                                                        tAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATaa                                 >  1:8261314/1‑93 (MQ=255)
                                                        tAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATaa                                 <  1:3333609/93‑1 (MQ=255)
                                                        tAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATaa                                 <  1:8905674/93‑1 (MQ=255)
                                                        tAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATaa                                 <  1:5119898/93‑1 (MQ=255)
                                                               gTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATACTGCGTAt                          >  2:648103/1‑93 (MQ=255)
                                                               gTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTAt                          >  2:5611962/1‑93 (MQ=255)
                                                               gTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTAt                          >  2:6099030/1‑93 (MQ=255)
                                                               gTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTAt                          <  1:9925737/93‑1 (MQ=255)
                                                                tATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATc                         >  1:8685189/1‑93 (MQ=255)
                                                                tATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATc                         <  1:7477095/93‑1 (MQ=255)
                                                                 aTTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCa                        >  1:1892449/1‑93 (MQ=255)
                                                                  ttGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCAt                       <  1:4597021/93‑1 (MQ=255)
                                                                     ttATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATtat                    >  1:6892995/1‑93 (MQ=255)
                                                                      tATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATtata                   <  2:1053848/93‑1 (MQ=255)
                                                                       aTCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAg                  >  2:6842008/1‑93 (MQ=255)
                                                                       aTCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAg                  >  2:3384074/1‑93 (MQ=255)
                                                                           gTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAAtt              >  1:400309/1‑93 (MQ=255)
                                                                            tCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTg             >  2:6695512/1‑93 (MQ=255)
                                                                              aTGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGcc           <  1:3178501/93‑1 (MQ=255)
                                                                               tGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGCCAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCa          <  1:4875648/93‑1 (MQ=255)
                                                                               tGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCa          <  1:3924164/93‑1 (MQ=255)
                                                                                gCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAc         <  1:8158021/93‑1 (MQ=255)
                                                                                gCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAc         <  2:1846143/93‑1 (MQ=255)
                                                                                  ggAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGc       <  1:7116072/93‑1 (MQ=255)
                                                                                   gAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGcc      >  2:4157730/1‑93 (MQ=255)
                                                                                     aTCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGCATTGCCACGCCTa    >  2:5686056/1‑93 (MQ=255)
                                                                                     aTCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTa    >  1:3671543/1‑93 (MQ=255)
                                                                                     aTCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTa    >  1:2730459/1‑93 (MQ=255)
                                                                                      tCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTaa   >  2:80023/1‑93 (MQ=255)
                                                                                       cTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTaaa  <  2:5938819/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAA  >  NC_000913/709790‑709969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 248 total aligned reads displayed.
TCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGA  >  NC_000913/709787‑709972
                                                                                             |                                                                                            
TCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGC                                                                                              >  SRR4302540.5403751/1‑94 (MQ=60)
TCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGC                                                                                              >  SRR4302540.5824654/1‑94 (MQ=60)
 CCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCC                                                                                             <  SRR4302540.1806193/94‑1 (MQ=60)
  CTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCC                                                                                            >  SRR4302540.8383887/1‑94 (MQ=60)
  CTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCC                                                                                            >  SRR4302540.7937467/1‑94 (MQ=60)
   TGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCT                                                                                           <  SRR4302540.9919726/94‑1 (MQ=60)
   TGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCT                                                                                           <  SRR4302540.4371891/94‑1 (MQ=60)
   TGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCT                                                                                           >  SRR4302540.2436417/1‑94 (MQ=60)
   TGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCT                                                                                           >  SRR4302540.2873149/1‑94 (MQ=60)
    GAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTG                                                                                          <  SRR4302540.4466352/94‑1 (MQ=60)
    GAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTG                                                                                          >  SRR4302540.5656019/1‑94 (MQ=60)
      AGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTT                                                                                        <  SRR4302540.8163205/94‑1 (MQ=60)
      AGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTT                                                                                        >  SRR4302540.3412066/1‑94 (MQ=60)
      AGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTT                                                                                        >  SRR4302540.130438/1‑94 (MQ=60)
      AGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTT                                                                                        <  SRR4302540.1778720/94‑1 (MQ=60)
      AGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGCT                                                                                        >  SRR4302540.2524271/1‑94 (MQ=60)
       GAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTA                                                                                       >  SRR4302540.6039277/1‑94 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      >  SRR4302540.3249314/1‑94 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      <  SRR4302540.8487470/94‑1 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      >  SRR4302540.6818551/1‑94 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      <  SRR4302540.8995963/94‑1 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      <  SRR4302540.3396603/94‑1 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      <  SRR4302540.5327151/94‑1 (MQ=60)
        AACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTAC                                                                                      <  SRR4302540.3980684/94‑1 (MQ=60)
         ACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACT                                                                                     >  SRR4302540.704344/1‑94 (MQ=60)
         ACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACT                                                                                     >  SRR4302540.8286694/1‑94 (MQ=60)
         ACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACT                                                                                     >  SRR4302540.350750/1‑94 (MQ=60)
          CTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTA                                                                                    >  SRR4302540.732031/1‑94 (MQ=60)
          CTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTA                                                                                    >  SRR4302540.2658731/1‑94 (MQ=60)
          CTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTA                                                                                    >  SRR4302540.2384396/1‑94 (MQ=60)
          CTGCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTAGCAGTCATGTGGATTTTGCCCTGTTACTA                                                                                    >  SRR4302540.9095329/1‑94 (MQ=60)
           TTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGACTCTGCCCTGTTACTAC                                                                                   >  SRR4302540.2502359/1‑94 (MQ=60)
            TCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAG                                                                                  <  SRR4302540.8790732/94‑1 (MQ=60)
            TCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAG                                                                                  <  SRR4302540.9517402/94‑1 (MQ=60)
             CCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGC                                                                                 >  SRR4302540.7326240/1‑94 (MQ=60)
              CAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCG                                                                                <  SRR4302540.7034639/94‑1 (MQ=60)
               AGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGG                                                                               >  SRR4302540.4985730/1‑94 (MQ=60)
                GGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGT                                                                              <  SRR4302540.1518112/94‑1 (MQ=60)
                GGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGT                                                                              >  SRR4302540.6016650/1‑94 (MQ=60)
                  ATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTC                                                                            >  SRR4302540.8077611/1‑94 (MQ=60)
                  ATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGATTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTC                                                                            >  SRR4302540.660923/1‑94 (MQ=60)
                    TTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCAC                                                                          <  SRR4302540.2797822/94‑1 (MQ=60)
                    TTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCAC                                                                          <  SRR4302540.3680090/94‑1 (MQ=60)
                    TTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCAC                                                                          >  SRR4302540.9851922/1‑94 (MQ=60)
                    TTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCAC                                                                          <  SRR4302540.9321434/94‑1 (MQ=60)
                     TTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACT                                                                         <  SRR4302540.4321433/94‑1 (MQ=60)
                      TGAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTT                                                                        <  SRR4302540.5710406/94‑1 (MQ=60)
                        taaccatGAAGCGTTGCCTTCAGGCCAGCTTTCTTTAGGGCTGTATTGTTTTCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCA                                                                      <  SRR4302540.3629434/87‑1 (MQ=60)
                        AAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTACGCGGTTCctttct                                                                      >  SRR4302540.7943893/1‑88 (MQ=60)
                        AAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCA                                                                      <  SRR4302540.7703720/94‑1 (MQ=60)
                        AAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCA                                                                      >  SRR4302540.8965757/1‑94 (MQ=60)
                         AACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCAT                                                                     <  SRR4302540.2943665/94‑1 (MQ=60)
                         AACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCAT                                                                     >  SRR4302540.9757506/1‑94 (MQ=60)
                         AACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCAT                                                                     <  SRR4302540.7459377/94‑1 (MQ=60)
                         AACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCAT                                                                     <  SRR4302540.359332/94‑1 (MQ=60)
                          ACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATT                                                                    <  SRR4302540.5132528/94‑1 (MQ=60)
                           CGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTA                                                                   >  SRR4302540.10031895/1‑94 (MQ=60)
                           CGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTA                                                                   >  SRR4302540.9175951/1‑94 (MQ=60)
                            GAGGAAGCGTTACTTTCAGGCCATCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGTATCTGCCCTGTTACTAAGCGGTTCACTTCATTAG                                                                  >  SRR4302540.7773621/1‑94 (MQ=60)
                            GAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAG                                                                  >  SRR4302540.1110536/1‑94 (MQ=60)
                            GAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAG                                                                  >  SRR4302540.4461782/1‑94 (MQ=60)
                            GAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAG                                                                  <  SRR4302540.1583940/94‑1 (MQ=60)
                            GAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAA                                                                  >  SRR4302540.1110534/1‑94 (MQ=60)
                             AGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGA                                                                 <  SRR4302540.8256963/94‑1 (MQ=60)
                             AGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGA                                                                 <  SRR4302540.4862874/94‑1 (MQ=60)
                             AGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGA                                                                 >  SRR4302540.9723256/1‑94 (MQ=60)
                             AGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGA                                                                 <  SRR4302540.9968561/94‑1 (MQ=60)
                              GGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAA                                                                <  SRR4302540.877814/94‑1 (MQ=60)
                              GGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAA                                                                <  SRR4302540.7965617/94‑1 (MQ=60)
                              GGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAA                                                                <  SRR4302540.1161648/94‑1 (MQ=60)
                              GGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAA                                                                >  SRR4302540.1963371/1‑94 (MQ=60)
                              GGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAA                                                                >  SRR4302540.2488553/1‑94 (MQ=60)
                                GAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGA                                                              <  SRR4302540.8045234/94‑1 (MQ=60)
                                 AGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAA                                                             <  SRR4302540.3440685/94‑1 (MQ=60)
                                 AGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAA                                                             <  SRR4302540.9210740/94‑1 (MQ=60)
                                 AGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAA                                                             >  SRR4302540.7209470/1‑94 (MQ=60)
                                  GCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAG                                                            >  SRR4302540.4045550/1‑94 (MQ=60)
                                  GCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAG                                                            <  SRR4302540.5766047/94‑1 (MQ=60)
                                   CGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGT                                                           <  SRR4302540.5054153/94‑1 (MQ=60)
                                   CGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGT                                                           >  SRR4302540.8159146/1‑94 (MQ=60)
                                    GTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTG                                                          >  SRR4302540.6058789/1‑94 (MQ=60)
                                     TTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGA                                                         >  SRR4302540.4237999/1‑94 (MQ=60)
                                     TTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGA                                                         <  SRR4302540.5543474/94‑1 (MQ=60)
                                       tcgttcacGCCAGCTTTCGTTAGGGCGGTATTGTTATCAGTCATGCGGAATCGGCCCTGTTACTAAGCGGTTCACTTCATGAGAAGAAGTGACA                                                       <  SRR4302540.8987198/86‑1 (MQ=60)
                                       ACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACA                                                       >  SRR4302540.7839555/1‑94 (MQ=60)
                                       ACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACA                                                       <  SRR4302540.8987199/94‑1 (MQ=60)
                                       ACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACA                                                       <  SRR4302540.5035098/94‑1 (MQ=60)
                                         TTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGA                                                     >  SRR4302540.2592156/1‑94 (MQ=60)
                                          TTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAA                                                    >  SRR4302540.6213283/1‑94 (MQ=60)
                                           TCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAAT                                                   <  SRR4302540.4325273/94‑1 (MQ=60)
                                            CAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATT                                                  <  SRR4302540.9952650/94‑1 (MQ=60)
                                             AGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTT                                                 <  SRR4302540.7695382/94‑1 (MQ=60)
                                             AGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTT                                                 <  SRR4302540.369004/94‑1 (MQ=60)
                                              GGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGCAGAAGTGACAGAATTTG                                                >  SRR4302540.4089605/1‑94 (MQ=60)
                                              GGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTG                                                >  SRR4302540.4089606/1‑94 (MQ=60)
                                              GGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTG                                                >  SRR4302540.1123561/1‑94 (MQ=60)
                                                CCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCT                                              >  SRR4302540.1738569/1‑94 (MQ=60)
                                                CCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCT                                              >  SRR4302540.8111887/1‑94 (MQ=60)
                                                CCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCT                                              <  SRR4302540.609651/94‑1 (MQ=60)
                                                 CAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTC                                             >  SRR4302540.8116668/1‑94 (MQ=60)
                                                 CAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTC                                             >  SRR4302540.2335571/1‑94 (MQ=60)
                                                 CAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGCTTCACTTCATTAGAAGAAGTGACAGAATTTGCTC                                             >  SRR4302540.9632658/1‑94 (MQ=60)
                                                  agctatctggAGGGCGGTGTGGTTATGAGTGATGCGGAATGTGCCGTGTTACTAAGCGTTTCACTTCATTAGAACAAGTGACAGAATTTGCTCT                                            <  SRR4302540.1477577/84‑1 (MQ=35)
                                                  AGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCT                                            <  SRR4302540.1477578/94‑1 (MQ=60)
                                                  AGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCT                                            >  SRR4302540.357492/1‑94 (MQ=60)
                                                   GCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTT                                           <  SRR4302540.2952060/94‑1 (MQ=60)
                                                   GCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTT                                           <  SRR4302540.2839762/94‑1 (MQ=60)
                                                   GCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTT                                           <  SRR4302540.10138663/94‑1 (MQ=60)
                                                     TTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGA                                         >  SRR4302540.3190418/1‑94 (MQ=60)
                                                     TTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGA                                         >  SRR4302540.2576413/1‑94 (MQ=60)
                                                     TTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGA                                         >  SRR4302540.5852761/1‑94 (MQ=60)
                                                     TTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGA                                         <  SRR4302540.9493107/94‑1 (MQ=60)
                                                     TTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGA                                         >  SRR4302540.8525693/1‑94 (MQ=60)
                                                     TTTCTGTATGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAATCTGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGA                                         <  SRR4302540.726626/94‑1 (MQ=60)
                                                      TTCTTTAGGGCGGTATTGTTATCAGTCATGGGGAATCAGCCCTGTTACTAAGCGGATCACTTCATCAGAAGAAtcgcaagaaatttctctatag                                        >  SRR4302540.3637722/1‑73 (MQ=60)
                                                      TTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAG                                        >  SRR4302540.3637723/1‑94 (MQ=60)
                                                      TTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAG                                        >  SRR4302540.2310817/1‑94 (MQ=60)
                                                        CTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGAT                                      >  SRR4302540.9489628/1‑94 (MQ=60)
                                                        CTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGAT                                      >  SRR4302540.8462571/1‑94 (MQ=60)
                                                         TTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATA                                     >  SRR4302540.3378290/1‑94 (MQ=60)
                                                         TTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATA                                     >  SRR4302540.3408201/1‑94 (MQ=60)
                                                          TTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAA                                    >  SRR4302540.8357316/1‑94 (MQ=60)
                                                          TTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAA                                    >  SRR4302540.3219244/1‑94 (MQ=60)
                                                          TTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAA                                    <  SRR4302540.3690063/94‑1 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   <  SRR4302540.9008789/94‑1 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   <  SRR4302540.4383505/94‑1 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   <  SRR4302540.9515719/94‑1 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   <  SRR4302540.5837557/94‑1 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   <  SRR4302540.3370217/94‑1 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   >  SRR4302540.85514/1‑94 (MQ=60)
                                                           TAGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAAT                                   <  SRR4302540.5175328/94‑1 (MQ=60)
                                                            AGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATG                                  >  SRR4302540.658105/1‑94 (MQ=60)
                                                            AGGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATG                                  <  SRR4302540.7754590/94‑1 (MQ=60)
                                                             GGGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGC                                 <  SRR4302540.6421036/94‑1 (MQ=60)
                                                             AGGCGGTATTGTTATCAGTCATGCTGAATCTGCCCTGTTACTAGGCGGTTCACTTCATTAGAAGAAGTGACACAATTTGCTCTTGAGCTAATGC                                 <  SRR4302540.6421037/94‑1 (MQ=60)
                                                              GGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCG                                <  SRR4302540.1885608/94‑1 (MQ=60)
                                                              GGCGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCG                                >  SRR4302540.1002669/1‑94 (MQ=60)
                                                                CGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTA                              >  SRR4302540.3941192/1‑94 (MQ=60)
                                                                CGGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTA                              >  SRR4302540.3941193/1‑94 (MQ=60)
                                                                 GGTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTAT                             <  SRR4302540.6481750/94‑1 (MQ=60)
                                                                  GTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATC                            >  SRR4302540.3421846/1‑94 (MQ=60)
                                                                  GTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATC                            <  SRR4302540.10041617/94‑1 (MQ=60)
                                                                  GTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATC                            <  SRR4302540.10041618/94‑1 (MQ=60)
                                                                  GTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATC                            <  SRR4302540.9328401/94‑1 (MQ=60)
                                                                  GTATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATC                            >  SRR4302540.8786041/1‑94 (MQ=60)
                                                                   TATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCT                           >  SRR4302540.8062708/1‑94 (MQ=60)
                                                                   TATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCA                           <  SRR4302540.7560538/94‑1 (MQ=60)
                                                                   TATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCA                           >  SRR4302540.1913165/1‑94 (MQ=60)
                                                                    ATTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCAT                          <  SRR4302540.5092475/94‑1 (MQ=60)
                                                                     TTGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATT                         <  SRR4302540.4646455/94‑1 (MQ=60)
                                                                      TGTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTA                        >  SRR4302540.4736027/1‑94 (MQ=60)
                                                                       GTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTAT                       <  SRR4302540.3720144/94‑1 (MQ=60)
                                                                       GTTATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTAT                       >  SRR4302540.5741323/1‑94 (MQ=60)
                                                                         TATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAG                     >  SRR4302540.7285045/1‑94 (MQ=60)
                                                                          ATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGA                    <  SRR4302540.4480689/94‑1 (MQ=60)
                                                                          ATCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGA                    >  SRR4302540.9613042/1‑94 (MQ=60)
                                                                           TCAGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAA                   <  SRR4302540.9585046/94‑1 (MQ=60)
                                                                             AGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATT                 >  SRR4302540.404479/1‑94 (MQ=60)
                                                                             AGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATT                 >  SRR4302540.6968142/1‑94 (MQ=60)
                                                                             AGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATT                 >  SRR4302540.6814450/1‑94 (MQ=60)
                                                                             AGTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATT                 >  SRR4302540.185226/1‑94 (MQ=60)
                                                                              GTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTG                >  SRR4302540.7119195/1‑94 (MQ=60)
                                                                              GTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTG                <  SRR4302540.8766808/94‑1 (MQ=60)
                                                                              GTCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTG                >  SRR4302540.9675156/1‑94 (MQ=60)
                                                                               TCATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGC               >  SRR4302540.5741302/1‑94 (MQ=60)
                                                                                CATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC              <  SRR4302540.7751651/94‑1 (MQ=60)
                                                                                CATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC              <  SRR4302540.9377182/94‑1 (MQ=60)
                                                                                CATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC              <  SRR4302540.7751653/94‑1 (MQ=60)
                                                                                CATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC              <  SRR4302540.6697738/94‑1 (MQ=60)
                                                                                CATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC              >  SRR4302540.8290735/1‑94 (MQ=60)
                                                                                CATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC              >  SRR4302540.3423057/1‑94 (MQ=60)
                                                                                 ATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCA             >  SRR4302540.9736250/1‑94 (MQ=60)
                                                                                 ATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCA             <  SRR4302540.3213041/94‑1 (MQ=60)
                                                                                 ATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCA             >  SRR4302540.5145742/1‑94 (MQ=60)
                                                                                 ATGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCA             >  SRR4302540.2606166/1‑94 (MQ=60)
                                                                                  TGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAC            <  SRR4302540.8963009/94‑1 (MQ=60)
                                                                                  TGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAC            <  SRR4302540.7487337/94‑1 (MQ=60)
                                                                                  TGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAC            <  SRR4302540.4581757/94‑1 (MQ=60)
                                                                                  TGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAC            <  SRR4302540.3966625/94‑1 (MQ=60)
                                                                                  TGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAC            <  SRR4302540.3210534/94‑1 (MQ=60)
                                                                                  TGCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCAC            <  SRR4302540.4860699/94‑1 (MQ=60)
                                                                                   GCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACG           <  SRR4302540.2391029/94‑1 (MQ=60)
                                                                                   GCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACG           <  SRR4302540.6149925/94‑1 (MQ=60)
                                                                                   GCGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACA           <  SRR4302540.8252735/94‑1 (MQ=60)
                                                                                    CGGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGC          >  SRR4302540.9162687/1‑94 (MQ=60)
                                                                                     GGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCC         >  SRR4302540.6797231/1‑94 (MQ=60)
                                                                                     GGAATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCC         <  SRR4302540.7195288/94‑1 (MQ=60)
                                                                                     GGAATCTGCCATGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCC         <  SRR4302540.7613128/94‑1 (MQ=60)
                                                                                       AATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTA       >  SRR4302540.2751204/1‑94 (MQ=60)
                                                                                       AATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTA       >  SRR4302540.2759918/1‑94 (MQ=60)
                                                                                       AATCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTA       >  SRR4302540.3711699/1‑94 (MQ=60)
                                                                                         TCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAA     <  SRR4302540.9612925/94‑1 (MQ=60)
                                                                                         TCTGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAA     >  SRR4302540.5046413/1‑94 (MQ=60)
                                                                                          CTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAATTGACAGATTTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAAT    <  SRR4302540.5258123/94‑1 (MQ=60)
                                                                                           TGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATG   >  SRR4302540.7563082/1‑94 (MQ=60)
                                                                                           TGCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATG   <  SRR4302540.3313192/94‑1 (MQ=60)
                                                                                            GCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGA  >  SRR4302540.5128458/1‑94 (MQ=60)
                                                                                            GCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGA  <  SRR4302540.3302911/94‑1 (MQ=60)
                                                                                            GCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGA  >  SRR4302540.2507064/1‑94 (MQ=60)
                                                                                            GCCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGA  <  SRR4302540.7601264/94‑1 (MQ=60)
                                                                                             |                                                                                            
TCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGCGGTATTGTTATCAGTCATGCGGAATCTGTCCTGTTACTAAGCGGTTCACTTCATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGA  >  NC_000913/709787‑709972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑