Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	747,399	A→G	S269S (AGT→AGC)	ybgO ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	747,399	0	A	G	100.0%	740.3 / NA	226	S269S (AGT→AGC)	ybgO	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/111); total (115/111)

Only 100 of 233 total aligned reads displayed.

GTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAACTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATC  >  NC_000913/747309‑747488

gTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCt                                                                                         >  2:1129438/1‑93 (MQ=255)

 ttttCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTg                                                                                        >  1:254907/1‑93 (MQ=255)

 ttttCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTg                                                                                        >  2:2429585/1‑93 (MQ=255)

   ttCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGAc                                                                                      <  1:3976116/93‑1 (MQ=255)

     cATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACtt                                                                                    >  2:4016110/1‑93 (MQ=255)

      aTCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACttt                                                                                   >  2:139002/1‑93 (MQ=255)

        ccAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTaa                                                                                 >  2:3080521/1‑93 (MQ=255)

        ccAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTaa                                                                                 <  2:4788082/93‑1 (MQ=255)

         cAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTaaa                                                                                >  1:1522926/1‑93 (MQ=255)

            tAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATcc                                                                             <  1:3163260/93‑1 (MQ=255)

            tAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATcc                                                                             <  2:163664/93‑1 (MQ=255)

            tAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATcc                                                                             >  1:5434606/1‑93 (MQ=255)

               aCGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTc                                                                          <  1:3550343/93‑1 (MQ=255)

                cGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCg                                                                         >  2:3018972/1‑93 (MQ=255)

                cGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCg                                                                         <  2:3296075/93‑1 (MQ=255)

                  tAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAATCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGt                                                                       >  1:5653789/1‑93 (MQ=255)

                  tAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCggg                                                                       >  2:2019121/1‑92 (MQ=255)

                  tAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGt                                                                       >  1:1070725/1‑93 (MQ=255)

                     cTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCa                                                                    >  2:5685690/1‑93 (MQ=255)

                      ttCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCAt                                                                   <  2:668020/93‑1 (MQ=255)

                       tCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCAtt                                                                  <  2:5010795/93‑1 (MQ=255)

                         aGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGa                                                                >  1:5488854/1‑93 (MQ=255)

                         aGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGa                                                                >  1:1479487/1‑93 (MQ=255)

                          gACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGAt                                                               >  2:5378975/1‑93 (MQ=255)

                           aCCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATc                                                              <  1:3432710/93‑1 (MQ=255)

                           aCCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATc                                                              <  2:3251106/93‑1 (MQ=255)

                           aCCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATc                                                              <  2:4440336/93‑1 (MQ=255)

                            ccATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCg                                                             >  2:3739705/1‑93 (MQ=255)

                             cATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGt                                                            >  1:2213079/1‑93 (MQ=255)

                              aTTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGtt                                                           >  2:2719396/1‑93 (MQ=255)

                              aTTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGtt                                                           >  1:4863031/1‑93 (MQ=255)

                               ttACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGttt                                                          <  1:4585762/93‑1 (MQ=255)

                               ttACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGttt                                                          >  1:1953398/1‑93 (MQ=255)

                               ttACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGttt                                                          >  1:2875231/1‑93 (MQ=255)

                                tACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGtttt                                                         >  1:4199708/1‑93 (MQ=255)

                                tACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGtttt                                                         <  2:2683366/93‑1 (MQ=255)

                                  ccAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTgg                                                       <  2:1518214/93‑1 (MQ=255)

                                   cAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGc                                                      >  1:6253226/1‑93 (MQ=255)

                                    aaTCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGct                                                     >  1:5850073/1‑93 (MQ=255)

                                      tCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGctct                                                   >  1:46566/1‑93 (MQ=255)

                                        aacaaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTg                                                 <  2:471830/93‑1 (MQ=255)

                                        aacaaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTg                                                 <  1:918450/93‑1 (MQ=255)

                                        aacaaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTg                                                 >  1:959508/1‑93 (MQ=255)

                                        aacaaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTg                                                 <  1:6249013/93‑1 (MQ=255)

                                         acaaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTgg                                                >  1:141936/1‑93 (MQ=255)

                                          caaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGt                                               <  2:600098/93‑1 (MQ=255)

                                          caaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGt                                               >  2:5320550/1‑93 (MQ=255)

                                           aaTGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTTGCTCTTGGTc                                              >  1:5012989/1‑93 (MQ=255)

                                              gCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGtt                                           >  2:1837998/1‑93 (MQ=255)

                                                  tATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTaa                                       >  1:1909635/1‑93 (MQ=255)

                                                    tcttctTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATa                                     <  1:4069447/93‑1 (MQ=255)

                                                    tcttctTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATa                                     <  1:2700849/93‑1 (MQ=255)

                                                     tttcttcAACCAACGTTTCTTCGGTATAAAAGGAGCAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAc                                    <  1:1983193/92‑1 (MQ=255)

                                                     cttcttCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAc                                    <  2:5922063/93‑1 (MQ=255)

                                                     cttcttCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAc                                    <  1:3894993/93‑1 (MQ=255)

                                                      ttcttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACt                                   <  1:2378973/93‑1 (MQ=255)

                                                       tcttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTg                                  >  1:5858057/1‑93 (MQ=255)

                                                        cttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGa                                 <  2:487512/93‑1 (MQ=255)

                                                        cttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGa                                 >  2:4284567/1‑93 (MQ=255)

                                                        cttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGa                                 <  1:5950958/93‑1 (MQ=255)

                                                        cttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGa                                 <  2:2578370/93‑1 (MQ=255)

                                                        cttcAACCAACGTTTCTTCAGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGa                                 >  2:1352172/1‑93 (MQ=255)

                                                         ttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGaa                                <  2:5026225/93‑1 (MQ=255)

                                                         ttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGaa                                <  2:5115293/93‑1 (MQ=255)

                                                         ttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGaa                                >  2:3602770/1‑93 (MQ=255)

                                                         ttcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCGTGGTCGTTTTAATACTGaa                                <  2:6137446/93‑1 (MQ=255)

                                                          tcAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAAc                               <  1:735993/93‑1 (MQ=255)

                                                           caaccaacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACg                              <  2:1599557/93‑1 (MQ=255)

                                                            aaccaacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGt                             >  1:2153737/1‑93 (MQ=255)

                                                             accaacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGtt                            >  2:704298/1‑93 (MQ=255)

                                                             accaacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGtt                            >  1:3742985/1‑93 (MQ=255)

                                                             accaacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGtt                            <  2:350353/93‑1 (MQ=255)

                                                              ccaacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGttt                           >  2:5653412/1‑93 (MQ=255)

                                                               caacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGtttt                          <  1:3285033/93‑1 (MQ=255)

                                                               caacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGtttt                          <  2:5540666/93‑1 (MQ=255)

                                                               caacGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGtttt                          >  1:4449052/1‑93 (MQ=255)

                                                                 acGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCg                        <  1:4643170/93‑1 (MQ=255)

                                                                 acGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCg                        >  1:4249675/1‑93 (MQ=255)

                                                                    tttCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACa                     <  1:1002802/93‑1 (MQ=255)

                                                                     ttcttcGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACAt                    >  1:3151535/1‑93 (MQ=255)

                                                                      tcttcGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACAtt                   <  2:4707108/93‑1 (MQ=255)

                                                                       cttcGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATtg                  <  2:1061341/93‑1 (MQ=255)

                                                                         tcGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATtgtg                <  2:1864535/93‑1 (MQ=255)

                                                                         tcGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATtgtg                <  1:1695320/93‑1 (MQ=255)

                                                                           ggTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATtgtgtg              <  2:615541/93‑1 (MQ=255)

                                                                           ggTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATtgtgtg              >  1:3716020/1‑93 (MQ=255)

                                                                           ggTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATtgtgtg              >  1:4823130/1‑93 (MQ=255)

                                                                            gTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTgg             >  1:5526987/1‑93 (MQ=255)

                                                                            gTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTgg             <  1:1581152/93‑1 (MQ=255)

                                                                            gTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTgg             >  1:3623473/1‑93 (MQ=255)

                                                                                aaaaGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGAc         >  2:2181220/1‑93 (MQ=255)

                                                                                  aaGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGt       >  2:4103618/1‑93 (MQ=255)

                                                                                   aggaggAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGta      >  2:589042/1‑93 (MQ=255)

                                                                                   aggaggAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGta      <  2:6242000/93‑1 (MQ=255)

                                                                                   aggaggAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGta      >  2:2265190/1‑93 (MQ=255)

                                                                                   aggaggAGCGGACTTTAAATCCGTCGGTGCAGTGATCGTTCTGGCTCTTGGTCGGTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGta      >  1:6298722/1‑93 (MQ=255)

                                                                                      aggaGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTatat   >  1:891589/1‑93 (MQ=255)

                                                                                       ggaGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATc  <  1:404056/93‑1 (MQ=255)

                                                                                       ggaGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATc  <  2:3850189/93‑1 (MQ=255)

                                                                                       ggaGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATc  >  2:6181189/1‑93 (MQ=255)

GTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAACTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATC  >  NC_000913/747309‑747488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAACTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCCAGC  >  NC_000913/747306‑747492

GGCGTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAG                                                                                               <  SRR4302533.3531005/94‑1 (MQ=60)

 GCGTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGC                                                                                              >  SRR4302533.5626065/1‑94 (MQ=60)

 GCGTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGC                                                                                              <  SRR4302533.4943700/94‑1 (MQ=60)

   GTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTG                                                                                            <  SRR4302533.5926739/94‑1 (MQ=60)

   GTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTG                                                                                            >  SRR4302533.256469/1‑94 (MQ=60)

    TTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGA                                                                                           <  SRR4302533.2306645/94‑1 (MQ=60)

     TTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGAC                                                                                          <  SRR4302533.3753111/94‑1 (MQ=60)

      TTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACT                                                                                         <  SRR4302533.4000323/94‑1 (MQ=60)

       TCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTT                                                                                        <  SRR4302533.3180606/94‑1 (MQ=60)

           CCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAA                                                                                    >  SRR4302533.1532090/1‑94 (MQ=60)

            CAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCACCGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAAT                                                                                   >  SRR4302533.5889300/1‑94 (MQ=60)

             AGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATC                                                                                  >  SRR4302533.3482248/1‑94 (MQ=60)

              GTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCC                                                                                 >  SRR4302533.5467335/1‑94 (MQ=60)

              GTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCC                                                                                 <  SRR4302533.5529058/94‑1 (MQ=60)

               TAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCG                                                                                <  SRR4302533.3182730/94‑1 (MQ=60)

               TAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCG                                                                                <  SRR4302533.2536116/94‑1 (MQ=60)

               TAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCG                                                                                <  SRR4302533.913144/94‑1 (MQ=60)

                AAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGT                                                                               >  SRR4302533.3647979/1‑94 (MQ=60)

                AAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGT                                                                               >  SRR4302533.2151790/1‑94 (MQ=60)

                 AACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTC                                                                              <  SRR4302533.1519912/94‑1 (MQ=60)

                  ACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCG                                                                             <  SRR4302533.3572216/94‑1 (MQ=60)

                  ACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCG                                                                             <  SRR4302533.3956007/94‑1 (MQ=60)

                    GTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAATCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGT                                                                           >  SRR4302533.5687961/1‑94 (MQ=60)

                    GTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGT                                                                           >  SRR4302533.1077033/1‑94 (MQ=60)

                    GTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGT                                                                           >  SRR4302533.6300256/1‑94 (MQ=60)

                    GTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGT                                                                           <  SRR4302533.3931618/94‑1 (MQ=60)

                     TAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTG                                                                          <  SRR4302533.3842680/94‑1 (MQ=60)

                      AGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGC                                                                         >  SRR4302533.676717/1‑94 (MQ=60)

                      AGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGC                                                                         <  SRR4302533.2400240/94‑1 (MQ=60)

                          TCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTG                                                                     >  SRR4302533.1501741/1‑94 (MQ=60)

                           CAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGA                                                                    >  SRR4302533.1488423/1‑94 (MQ=60)

                           CAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGA                                                                    >  SRR4302533.5521944/1‑94 (MQ=60)

                            AGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGAT                                                                   <  SRR4302533.571860/94‑1 (MQ=60)

                             GACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATC                                                                  <  SRR4302533.1738351/94‑1 (MQ=60)

                             GACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATC                                                                  <  SRR4302533.4347414/94‑1 (MQ=60)

                              ACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCG                                                                 <  SRR4302533.901000/94‑1 (MQ=60)

                              ACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCG                                                                 >  SRR4302533.1030903/1‑94 (MQ=60)

                              ACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCG                                                                 <  SRR4302533.3453918/94‑1 (MQ=60)

                              ACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGAAGGAGCTGACTTTAAATCCGTCGGTGCcttaatca                                                                 >  SRR4302533.4022834/1‑86 (MQ=60)

                               CCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGT                                                                >  SRR4302533.2226733/1‑94 (MQ=60)

                               CCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGT                                                                >  SRR4302533.5145201/1‑94 (MQ=60)

                                CATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTT                                                               >  SRR4302533.4892503/1‑94 (MQ=60)

                                CATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTT                                                               >  SRR4302533.1735774/1‑94 (MQ=60)

                                 ATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTT                                                              >  SRR4302533.1965303/1‑94 (MQ=60)

                                 ATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTT                                                              >  SRR4302533.6214954/1‑94 (MQ=60)

                                 ATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTT                                                              >  SRR4302533.2892923/1‑94 (MQ=60)

                                  TTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTT                                                             >  SRR4302533.4225122/1‑94 (MQ=60)

                                  TTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTT                                                             >  SRR4302533.4255020/1‑94 (MQ=60)

                                  TTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTT                                                             >  SRR4302533.2769888/1‑94 (MQ=60)

                                  TTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTT                                                             <  SRR4302533.4613542/94‑1 (MQ=60)

                                   TACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTG                                                            <  SRR4302533.2223844/94‑1 (MQ=60)

                                   TACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTG                                                            <  SRR4302533.3346580/94‑1 (MQ=60)

                                   TACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAAGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTG                                                            >  SRR4302533.1946537/1‑94 (MQ=60)

                                     CCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGC                                                          >  SRR4302533.6290629/1‑94 (MQ=60)

                                      CAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCT                                                         >  SRR4302533.1589844/1‑94 (MQ=60)

                                      CAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCT                                                         >  SRR4302533.5885445/1‑94 (MQ=60)

                                       AATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTC                                                        >  SRR4302533.132900/1‑94 (MQ=60)

                                        ATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCT                                                       >  SRR4302533.973463/1‑94 (MQ=60)

                                        ATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCT                                                       >  SRR4302533.46888/1‑94 (MQ=60)

                                          CAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTG                                                     <  SRR4302533.1965936/94‑1 (MQ=60)

                                          CAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTG                                                     <  SRR4302533.5508815/94‑1 (MQ=60)

                                          CAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTG                                                     >  SRR4302533.965150/1‑94 (MQ=60)

                                           AACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGG                                                    <  SRR4302533.923847/94‑1 (MQ=60)

                                           AACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGG                                                    <  SRR4302533.4641407/94‑1 (MQ=60)

                                           AACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGG                                                    >  SRR4302533.142843/1‑94 (MQ=60)

                                           AACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGG                                                    <  SRR4302533.6286401/94‑1 (MQ=60)

                                           AACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGG                                                    <  SRR4302533.3251984/94‑1 (MQ=60)

                                             CAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTTGCTCTTGGTC                                                  >  SRR4302533.5043362/1‑94 (MQ=60)

                                               ATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGT                                                <  SRR4302533.932397/94‑1 (MQ=60)

                                               ATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGT                                                >  SRR4302533.363183/1‑94 (MQ=60)

                                                TGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTT                                               <  SRR4302533.2123666/94‑1 (MQ=60)

                                                 GCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTT                                              <  SRR4302533.505582/94‑1 (MQ=60)

                                                   TTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTA                                            <  SRR4302533.5629533/94‑1 (MQ=60)

                                                    TTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAA                                           >  SRR4302533.1921286/1‑94 (MQ=60)

                                                     TATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAAT                                          >  SRR4302533.5942090/1‑94 (MQ=60)

                                                      ATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATA                                         >  SRR4302533.2567710/1‑94 (MQ=60)

                                                       TCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAC                                        <  SRR4302533.2717419/94‑1 (MQ=60)

                                                       TCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAC                                        <  SRR4302533.4736224/94‑1 (MQ=60)

                                                       TCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAC                                        <  SRR4302533.4094220/94‑1 (MQ=60)

                                                       TCTTCTTCAACCAACGTGTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATAC                                        <  SRR4302533.4736225/94‑1 (MQ=60)

                                                        TTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGCAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACT                                       <  SRR4302533.1995331/94‑1 (MQ=60)

                                                        CTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACT                                       <  SRR4302533.3918758/94‑1 (MQ=60)

                                                         TTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTG                                      >  SRR4302533.5893471/1‑94 (MQ=60)

                                                         TTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTG                                      <  SRR4302533.2393691/94‑1 (MQ=60)

                                                         TTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTG                                      >  SRR4302533.856303/1‑94 (MQ=60)

                                                           CTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAA                                    <  SRR4302533.5986953/94‑1 (MQ=60)

                                                           CTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAA                                    <  SRR4302533.4869831/94‑1 (MQ=60)

                                                           CTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAA                                    <  SRR4302533.301210/94‑1 (MQ=60)

                                                            TTCAACCGACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAAC                                   <  SRR4302533.3388384/94‑1 (MQ=60)

                                                            TTCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAAC                                   <  SRR4302533.167181/94‑1 (MQ=60)

                                                             TCAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACG                                  <  SRR4302533.740323/94‑1 (MQ=60)

                                                              CAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGTCATAAAATCCGACGGAGCATTAATCGTTTTGGCTCTTGGTCGTTTTATTACTGAACGA                                 <  SRR4302533.6335237/94‑1 (MQ=60)

                                                              CAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGT                                 >  SRR4302533.2167002/1‑94 (MQ=60)

                                                              CAACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGT                                 <  SRR4302533.4068824/94‑1 (MQ=60)

                                                               AACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTT                                >  SRR4302533.3765942/1‑94 (MQ=60)

                                                                ACCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTT                               >  SRR4302533.4531232/1‑94 (MQ=60)

                                                                 CCAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTT                              >  SRR4302533.4475959/1‑94 (MQ=60)

                                                                  CAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTC                             <  SRR4302533.3305309/94‑1 (MQ=60)

                                                                  CAACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTC                             >  SRR4302533.4155283/1‑94 (MQ=60)

                                                                   AACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCG                            >  SRR4302533.4275319/1‑94 (MQ=60)

                                                                    ACGTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGA                           <  SRR4302533.4671301/94‑1 (MQ=60)

                                                                      GTTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACA                         >  SRR4302533.3041683/1‑94 (MQ=60)

                                                                       TTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACAT                        >  SRR4302533.3170910/1‑94 (MQ=60)

                                                                       TTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACAT                        <  SRR4302533.1008662/94‑1 (MQ=60)

                                                                       TTTCTTCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACAT                        <  SRR4302533.628572/94‑1 (MQ=60)

                                                                            TCGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGT                   <  SRR4302533.1705587/94‑1 (MQ=60)

                                                                             CGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTG                  >  SRR4302533.4852351/1‑94 (MQ=60)

                                                                             CGGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTG                  >  SRR4302533.3738832/1‑94 (MQ=60)

                                                                              GGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGG                 >  SRR4302533.5560354/1‑94 (MQ=60)

                                                                              GGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGG                 >  SRR4302533.3645772/1‑94 (MQ=60)

                                                                              GGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGG                 <  SRR4302533.4674767/94‑1 (MQ=60)

                                                                              GGTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGG                 >  SRR4302533.1486278/1‑94 (MQ=60)

                                                                               GTATAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGC                <  SRR4302533.1590676/94‑1 (MQ=60)

                                                                                  TAAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGAC             <  SRR4302533.4169681/94‑1 (MQ=60)

                                                                                   AAAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACG            >  SRR4302533.4585087/1‑94 (MQ=60)

                                                                                    AAAGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGT           >  SRR4302533.4900639/1‑94 (MQ=60)

                                                                                     AAGGAGGAGCGGACTTTAAATCCGTCGGTGCAGTGATCGTTCTGGCTCTTGGTCGGTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTA          >  SRR4302533.6336322/1‑94 (MQ=60)

                                                                                      AGGAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTAT         >  SRR4302533.3712917/1‑94 (MQ=60)

                                                                                        GAGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATAT       >  SRR4302533.896829/1‑94 (MQ=60)

                                                                                         AGGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATC      >  SRR4302533.5614262/1‑94 (MQ=60)

                                                                                          GGAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCC     <  SRR4302533.406491/94‑1 (MQ=60)

                                                                                           GAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCCA    <  SRR4302533.4569163/94‑1 (MQ=60)

                                                                                           GAGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCCA    <  SRR4302533.1029971/94‑1 (MQ=60)

                                                                                            AGCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCCAG   <  SRR4302533.4478322/94‑1 (MQ=60)

                                                                                             GCTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCCAGC  <  SRR4302533.5051849/94‑1 (MQ=60)

GGCGTTTTCATCCAGTAAACGTAGCTTCAGACCATTACCAATCAACAATGCTTTATCTTCTTCAACCAACGTTTCTTCGGTATAAAAGGAGGAACTGACTTTAAATCCGTCGGTGCATTGATCGTTTTGGCTCTTGGTCGTTTTAATACTGAACGTTTTCGACATTGTGTGGCGACGTATATCCAGC  >  NC_000913/747306‑747492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`