Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	747,952	A→G	V85A (GTA→GCA)	ybgO ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	747,952	0	A	G	100.0%	1092.7 / NA	338	V85A (GTA→GCA)	ybgO	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (149/189); total (149/189)

Only 100 of 347 total aligned reads displayed.

CGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTACCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATC  >  NC_000913/747862‑748041

 gACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGccc                                                                                        <  2:5141851/93‑1 (MQ=255)

 gACTGTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGccc                                                                                        <  1:4210210/93‑1 (MQ=255)

  aCTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCa                                                                                       >  2:8260981/1‑93 (MQ=255)

  aCTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCa                                                                                       >  1:2537660/1‑93 (MQ=255)

    tttttCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAgg                                                                                     >  1:3719230/1‑93 (MQ=255)

    tttttCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAgg                                                                                     >  1:1923174/1‑93 (MQ=255)

      tttCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCg                                                                                   >  1:9032155/1‑93 (MQ=255)

        tCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTa                                                                                 <  1:6276959/93‑1 (MQ=255)

         cccAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAg                                                                                >  1:7331223/1‑93 (MQ=255)

          ccAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGa                                                                               <  2:3524707/93‑1 (MQ=255)

          ccAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGa                                                                               >  2:2189716/1‑93 (MQ=255)

           cAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGAc                                                                              <  2:5881254/93‑1 (MQ=255)

           cAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGAc                                                                              <  2:9689387/93‑1 (MQ=255)

            aGACTGGCATCGTAATCGACTCCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACa                                                                             <  1:3309818/93‑1 (MQ=255)

            aGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACa                                                                             <  2:6691002/93‑1 (MQ=255)

            aGACAGGCATGGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACa                                                                             <  2:1158980/93‑1 (MQ=255)

             gACTGGCATCGTAATCGACACCGTTGTATGCCACGCCGAGTTGATAATAACGATCCTGCAGCCCCGGATAGGGGTTTGCCCAGGAGTAGAGAt                                                                            >  1:1098916/1‑93 (MQ=255)

               cTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGc                                                                          <  1:497736/93‑1 (MQ=255)

               cTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGc                                                                          <  1:950369/93‑1 (MQ=255)

                tGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGcc                                                                         >  1:7104469/1‑92 (MQ=255)

                 ggCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTc                                                                        <  1:1665180/93‑1 (MQ=255)

                    aTCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCt                                                                     >  1:9389833/1‑93 (MQ=255)

                     tCGTATTCGATTCCGTTGTATGTCACGCCGAGTTGATTATAACGATCCTGCTCTCCTGGTTAGGGGGTTGCCCAGGTGTAGACATTCTTGCtt                                                                    >  2:8946356/1‑93 (MQ=255)

                     tCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCtt                                                                    >  1:5346610/1‑93 (MQ=255)

                     tCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGGTTGCCCAGGCGTAGACATGCTCGCtt                                                                    >  2:1030565/1‑93 (MQ=255)

                     tCGTAATCGACACCGTTGTATGTCACGCCCAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGATTGCCCAGGCGTAGACATGCTCGCtt                                                                    >  1:2679369/1‑93 (MQ=255)

                          aTCGACCCCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCaaa                                                               <  2:5774369/93‑1 (MQ=255)

                          aTCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCaaa                                                               <  2:2313399/93‑1 (MQ=255)

                           tCGACGCCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAg                                                              <  2:302072/93‑1 (MQ=255)

                            cGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGt                                                             <  1:4016437/93‑1 (MQ=255)

                            cGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGGTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGt                                                             >  2:9528119/1‑93 (MQ=255)

                             gACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGtt                                                            <  2:4322513/93‑1 (MQ=255)

                               cacCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGc                                                          <  1:9989185/93‑1 (MQ=255)

                                 ccGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCg                                                        >  1:2712833/1‑93 (MQ=255)

                                 ccGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCg                                                        <  1:3380550/93‑1 (MQ=255)

                                 ccGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCg                                                        >  2:4521459/1‑93 (MQ=255)

                                     tGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTgg                                                    <  1:6710967/93‑1 (MQ=255)

                                      gTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGt                                                   <  2:7392887/93‑1 (MQ=255)

                                       tATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTa                                                  <  2:8311155/93‑1 (MQ=255)

                                        aTGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAt                                                 >  1:7620731/1‑93 (MQ=255)

                                         tGTCACGCCGAGTTGATAATAACGATCCTGCCCCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAtt                                                <  2:7924235/93‑1 (MQ=255)

                                         tGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGCTAGGGGTTTGACCAGGCGTAGCCATGCTCGCTTTCAAAGTTGCCGTTGGTAtt                                                >  1:8144799/1‑93 (MQ=255)

                                         tGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAtt                                                >  2:725549/1‑93 (MQ=255)

                                          gTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttg                                               >  2:7776322/1‑93 (MQ=255)

                                          gTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttg                                               >  2:8581489/1‑93 (MQ=255)

                                          gTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttg                                               >  1:6047743/1‑93 (MQ=255)

                                          gTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttg                                               >  1:1229926/1‑93 (MQ=255)

                                          gTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttg                                               >  2:6973457/1‑93 (MQ=255)

                                           tCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttgt                                              <  1:992475/93‑1 (MQ=255)

                                           tCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAttgt                                              <  2:2537660/93‑1 (MQ=255)

                                               gCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTc                                          <  1:8391003/93‑1 (MQ=255)

                                                 cGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCACGCTTTCAAAGTTGCCGTTGGTATTGTTGTcac                                        >  1:9676249/1‑93 (MQ=255)

                                                    gTTGATAATAACGATCCTGCACCCCCGGCTAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAAt                                     >  1:1299632/1‑93 (MQ=255)

                                                    gTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAAt                                     <  1:1355682/93‑1 (MQ=255)

                                                     ttGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATa                                    <  1:4547609/93‑1 (MQ=255)

                                                     ttGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATa                                    <  2:3382989/93‑1 (MQ=255)

                                                     ttGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATa                                    >  2:5014621/1‑93 (MQ=255)

                                                     ttGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATa                                    <  1:6514443/93‑1 (MQ=255)

                                                      tGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAg                                   <  2:5511603/93‑1 (MQ=255)

                                                      tGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAg                                   <  2:2096526/93‑1 (MQ=255)

                                                      tGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAg                                   <  2:8100188/93‑1 (MQ=255)

                                                       gATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGa                                  <  2:4185581/93‑1 (MQ=255)

                                                        ataataACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGAc                                 <  2:3681466/93‑1 (MQ=255)

                                                         taataaCGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACg                                >  1:7476401/1‑93 (MQ=255)

                                                          aataaCGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACgg                               >  2:1930561/1‑93 (MQ=255)

                                                          aataaCGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACgg                               >  2:3654247/1‑93 (MQ=255)

                                                          aataaCGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACgg                               <  1:5894681/93‑1 (MQ=255)

                                                            taaCGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGa                             >  2:4827271/1‑93 (MQ=255)

                                                                 aTCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAAtttt                        >  2:3218545/1‑93 (MQ=255)

                                                                  tCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTa                       >  1:8848278/1‑93 (MQ=255)

                                                                  tCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTa                       <  1:1325853/93‑1 (MQ=255)

                                                                   ccTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTaa                      <  1:2232704/93‑1 (MQ=255)

                                                                     tGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAata                    >  1:3795415/1‑93 (MQ=255)

                                                                     tGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAata                    <  2:3948460/93‑1 (MQ=255)

                                                                     tGCACCCCCGGATAGGGGCTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAata                    >  1:7823281/1‑93 (MQ=255)

                                                                      tcACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAatat                   <  2:1620431/92‑1 (MQ=255)

                                                                      gCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAatat                   <  2:6729915/93‑1 (MQ=255)

                                                                        aCCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCg                 >  1:5051853/1‑93 (MQ=255)

                                                                         cccccGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGt                <  1:7986118/93‑1 (MQ=255)

                                                                          ccccGGATAGGGTTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTc               <  2:1431648/93‑1 (MQ=255)

                                                                          ccccGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTc               >  2:6221415/1‑93 (MQ=255)

                                                                          ccccGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTc               <  1:3480709/93‑1 (MQ=255)

                                                                          ccccGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTc               <  2:3152046/93‑1 (MQ=255)

                                                                             cGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGa            <  1:2400766/93‑1 (MQ=255)

                                                                               gATAGGGGTTTGCCCAGGCGTAGACCTGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGAtt          >  1:4612851/1‑93 (MQ=255)

                                                                                 tAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTcc        <  1:6670837/93‑1 (MQ=255)

                                                                                 tAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTcc        >  2:651479/1‑93 (MQ=255)

                                                                                 tAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTcc        >  2:1278398/1‑93 (MQ=255)

                                                                                 tAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTcc        >  1:5265576/1‑93 (MQ=255)

                                                                                 tAGGGGGTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTCATATCGTCAGATTcc        >  2:4030161/1‑93 (MQ=255)

                                                                                  aGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTccc       <  1:4479665/93‑1 (MQ=255)

                                                                                   ggggTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCa      >  1:2786322/1‑93 (MQ=255)

                                                                                   ggggTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCa      <  2:1884047/93‑1 (MQ=255)

                                                                                   ggggTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCa      >  2:9848880/1‑93 (MQ=255)

                                                                                     gatttGCCCAGGCGTAGACATGCTCGCTGGCAAAGTTGCCGTTGGTATTGTTGCCGCAATAGCCGGGAATTTTAATATCGTCAGATTCCCAGa    <  2:7057847/91‑1 (MQ=255)

                                                                                      gTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGAt   >  2:2839016/1‑93 (MQ=255)

                                                                                      gTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGAt   >  2:2058541/1‑93 (MQ=255)

                                                                                       tttGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATc  >  1:10044134/1‑93 (MQ=255)

                                                                                       tttGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATc  <  1:9263096/93‑1 (MQ=255)

                                                                                       tttGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATc  >  1:8701136/1‑93 (MQ=255)

CGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTACCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATC  >  NC_000913/747862‑748041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTACCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTAT  >  NC_000913/747859‑748045

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTG                                                                                               >  SRR4302540.4731028/1‑94 (MQ=60)

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTG                                                                                               <  SRR4302540.772234/94‑1 (MQ=60)

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTG                                                                                               <  SRR4302540.5982590/94‑1 (MQ=60)

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTG                                                                                               >  SRR4302540.8675672/1‑94 (MQ=60)

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTG                                                                                               <  SRR4302540.2607530/94‑1 (MQ=60)

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGAACCCCCGGATAGGGGTTTG                                                                                               >  SRR4302540.1923464/1‑94 (MQ=60)

   CGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCC                                                                                            >  SRR4302540.9502264/1‑94 (MQ=60)

   CGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCC                                                                                            <  SRR4302540.1281763/94‑1 (MQ=60)

   CGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCC                                                                                            <  SRR4302540.1281762/94‑1 (MQ=60)

    GACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCA                                                                                           >  SRR4302540.2565027/1‑94 (MQ=60)

    GACTGTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCA                                                                                           <  SRR4302540.4256051/94‑1 (MQ=60)

     ACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAG                                                                                          >  SRR4302540.4663097/1‑94 (MQ=60)

      CTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGG                                                                                         <  SRR4302540.1359043/94‑1 (MQ=60)

      CTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGG                                                                                         >  SRR4302540.1944142/1‑94 (MQ=60)

      CTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGG                                                                                         >  SRR4302540.3759812/1‑94 (MQ=60)

       TTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGC                                                                                        <  SRR4302540.5569820/94‑1 (MQ=60)

        TTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCG                                                                                       >  SRR4302540.9140546/1‑94 (MQ=60)

        TTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCG                                                                                       <  SRR4302540.3707366/94‑1 (MQ=60)

           TCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAG                                                                                    <  SRR4302540.6346790/94‑1 (MQ=60)

           TCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAG                                                                                    >  SRR4302540.7413066/1‑94 (MQ=60)

           TCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAG                                                                                    <  SRR4302540.6120797/94‑1 (MQ=60)

            CCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGA                                                                                   <  SRR4302540.4111998/94‑1 (MQ=60)

             CCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGAC                                                                                  <  SRR4302540.9699665/94‑1 (MQ=60)

               AGACTGTCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                <  SRR4302540.8743532/94‑1 (MQ=60)

               AGACTGGCATCGTAATCGACTCCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                <  SRR4302540.3346078/94‑1 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                >  SRR4302540.4579495/1‑94 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                <  SRR4302540.4583823/94‑1 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                <  SRR4302540.10027740/94‑1 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                <  SRR4302540.6131193/94‑1 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                >  SRR4302540.1109915/1‑94 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACAT                                                                                <  SRR4302540.20876/94‑1 (MQ=60)

               AGACTGGCATCGTAATCGACACCGTTGTATGCCACGCCGAGTTGATAATAACGATCCTGCAGCCCCGGATAGGGGTTTGCCCAGGAGTAGAGAT                                                                                >  SRR4302540.1110231/1‑94 (MQ=60)

                 ACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGC                                                                              <  SRR4302540.7251231/94‑1 (MQ=60)

                 ACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGC                                                                              >  SRR4302540.8298804/1‑94 (MQ=60)

                  CTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCT                                                                             <  SRR4302540.960250/94‑1 (MQ=60)

                  CTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCT                                                                             <  SRR4302540.503073/94‑1 (MQ=60)

                  CTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCC                                                                             >  SRR4302540.7183515/1‑94 (MQ=60)

                   TGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTC                                                                            >  SRR4302540.3380859/1‑94 (MQ=60)

                   TGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTC                                                                            <  SRR4302540.2130392/94‑1 (MQ=60)

                    GGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCG                                                                           <  SRR4302540.8869556/94‑1 (MQ=60)

                    GGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCG                                                                           <  SRR4302540.1683307/94‑1 (MQ=60)

                      CATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCT                                                                         <  SRR4302540.1080255/94‑1 (MQ=60)

                      CATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCT                                                                         >  SRR4302540.9501576/1‑94 (MQ=60)

                       ATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTT                                                                        >  SRR4302540.8344881/1‑94 (MQ=60)

                       ATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTT                                                                        >  SRR4302540.5405274/1‑94 (MQ=60)

                       ATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTT                                                                        >  SRR4302540.6745075/1‑94 (MQ=60)

                       ATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTT                                                                        >  SRR4302540.6745076/1‑94 (MQ=60)

                       ATCGTAATCGACACCGTTGTATGTCACGCCCAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGATTGCCCAGGCGTAGACATGCTCGCTT                                                                        >  SRR4302540.2708355/1‑94 (MQ=60)

                           TAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAA                                                                    >  SRR4302540.2718810/1‑94 (MQ=60)

                           TAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAA                                                                    <  SRR4302540.5228997/94‑1 (MQ=60)

                            AATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAA                                                                   >  SRR4302540.1890442/1‑94 (MQ=60)

                             ATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAG                                                                  >  SRR4302540.7137992/1‑94 (MQ=60)

                             ATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAG                                                                  <  SRR4302540.1939940/94‑1 (MQ=60)

                             ATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAG                                                                  <  SRR4302540.3047574/94‑1 (MQ=60)

                               CGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTT                                                                <  SRR4302540.3461821/94‑1 (MQ=60)

                               CGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTT                                                                <  SRR4302540.6256677/94‑1 (MQ=60)

                               CGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTT                                                                <  SRR4302540.4059698/94‑1 (MQ=60)

                                CACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTG                                                               <  SRR4302540.9358756/94‑1 (MQ=60)

                                  CACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCG                                                             <  SRR4302540.2788455/94‑1 (MQ=60)

                                  CACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCC                                                             <  SRR4302540.3439685/94‑1 (MQ=60)

                                  CACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCC                                                             <  SRR4302540.10105621/94‑1 (MQ=60)

                                   ACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCG                                                            >  SRR4302540.2742085/1‑94 (MQ=60)

                                   ACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCG                                                            >  SRR4302540.8488943/1‑94 (MQ=60)

                                    CCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGT                                                           <  SRR4302540.3417459/94‑1 (MQ=60)

                                     CGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTT                                                          >  SRR4302540.5475289/1‑94 (MQ=60)

                                        TGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGT                                                       <  SRR4302540.2740745/94‑1 (MQ=60)

                                        TGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGT                                                       <  SRR4302540.6785021/94‑1 (MQ=60)

                                        TGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGT                                                       <  SRR4302540.9474906/94‑1 (MQ=60)

                                        TGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGT                                                       <  SRR4302540.5324561/94‑1 (MQ=60)

                                         GTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGCTAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTA                                                      >  SRR4302540.1689391/1‑94 (MQ=60)

                                         GTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTA                                                      <  SRR4302540.6431688/94‑1 (MQ=60)

                                         GTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTA                                                      >  SRR4302540.4176046/1‑94 (MQ=60)

                                         GTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTA                                                      >  SRR4302540.7570730/1‑94 (MQ=60)

                                          TATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAT                                                     <  SRR4302540.2344585/94‑1 (MQ=60)

                                          TATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAT                                                     >  SRR4302540.7706423/1‑94 (MQ=60)

                                          TATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTAT                                                     <  SRR4302540.8061999/94‑1 (MQ=60)

                                           ATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGCTAGGGGTTTGACCAGGCGTAGCCATGCTCGCTTTCAAAGTTGCCGTTGGTATT                                                    >  SRR4302540.8239346/1‑94 (MQ=60)

                                           ATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATT                                                    <  SRR4302540.7538608/94‑1 (MQ=60)

                                           ATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATT                                                    <  SRR4302540.1236591/94‑1 (MQ=60)

                                            TGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTG                                                   >  SRR4302540.7330743/1‑94 (MQ=60)

                                            TGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTG                                                   >  SRR4302540.6114938/1‑94 (MQ=60)

                                            TGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTG                                                   >  SRR4302540.1242495/1‑94 (MQ=60)

                                            TGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTG                                                   <  SRR4302540.2928886/94‑1 (MQ=60)

                                              TCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTT                                                 <  SRR4302540.1002596/94‑1 (MQ=60)

                                               CACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTG                                                >  SRR4302540.5308654/1‑94 (MQ=60)

                                               CACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTG                                                <  SRR4302540.1351496/94‑1 (MQ=60)

                                                ACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGT                                               >  SRR4302540.6689241/1‑94 (MQ=60)

                                                ACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGT                                               >  SRR4302540.4787768/1‑94 (MQ=60)

                                                ACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGT                                               <  SRR4302540.2606935/94‑1 (MQ=60)

                                                 CGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTGGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTC                                              >  SRR4302540.3413271/1‑94 (MQ=60)

                                                  GCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCA                                             <  SRR4302540.8488370/94‑1 (MQ=60)

                                                   CCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCAC                                            <  SRR4302540.7203165/94‑1 (MQ=60)

                                                   CCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCAC                                            >  SRR4302540.637987/1‑94 (MQ=60)

                                                   CCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCACGCTTTCAAAGTTGCCGTTGGTATTGTTGTCAC                                            >  SRR4302540.9790100/1‑94 (MQ=60)

                                                    CGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACA                                           >  SRR4302540.507576/1‑94 (MQ=60)

                                                     GAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAA                                          <  SRR4302540.7624704/94‑1 (MQ=60)

                                                     GAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAA                                          <  SRR4302540.1317076/94‑1 (MQ=60)

                                                      AGTTGATAATAACGATCCTGCACCCCCGGCTAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAAT                                         >  SRR4302540.1313103/1‑94 (MQ=60)

                                                      AGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAAT                                         <  SRR4302540.8383927/94‑1 (MQ=60)

                                                      AGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAAT                                         <  SRR4302540.1155655/94‑1 (MQ=60)

                                                      AGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAAT                                         <  SRR4302540.9498186/94‑1 (MQ=60)

                                                       GTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATA                                        <  SRR4302540.52059/94‑1 (MQ=60)

                                                       GTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATA                                        >  SRR4302540.7863383/1‑94 (MQ=60)

                                                       GTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATA                                        >  SRR4302540.7863384/1‑94 (MQ=60)

                                                       GTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATA                                        <  SRR4302540.1369962/94‑1 (MQ=60)

                                                       GTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATA                                        <  SRR4302540.914087/94‑1 (MQ=60)

                                                       GTTGATAATAACGATCCTGCACCCCCGGAGAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATA                                        <  SRR4302540.2622858/94‑1 (MQ=60)

                                                        TTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAG                                       <  SRR4302540.1265133/94‑1 (MQ=60)

                                                        TTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAG                                       <  SRR4302540.6586812/94‑1 (MQ=60)

                                                        TTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAG                                       <  SRR4302540.4596805/94‑1 (MQ=60)

                                                        GTGATAATAACGATCCTGCGCCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAG                                       <  SRR4302540.9928295/94‑1 (MQ=60)

                                                         TGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGA                                      >  SRR4302540.1369206/1‑94 (MQ=60)

                                                         TGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGA                                      <  SRR4302540.7053473/94‑1 (MQ=60)

                                                         TGATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGA                                      >  SRR4302540.2301520/1‑94 (MQ=60)

                                                          GATAATAACGATCCTGCCCCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGAC                                     <  SRR4302540.7675084/94‑1 (MQ=60)

                                                          GATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGAC                                     <  SRR4302540.338613/94‑1 (MQ=60)

                                                          GATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGAC                                     <  SRR4302540.3784963/94‑1 (MQ=60)

                                                           ATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACG                                    <  SRR4302540.5554125/94‑1 (MQ=60)

                                                           ATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACG                                    <  SRR4302540.9608652/94‑1 (MQ=60)

                                                           ATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACG                                    >  SRR4302540.7559836/1‑94 (MQ=60)

                                                           ATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACG                                    <  SRR4302540.2768373/94‑1 (MQ=60)

                                                           ATAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTCTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACG                                    >  SRR4302540.7559835/1‑94 (MQ=60)

                                                           ATAATAACGATCCTGCACCCCCGGATAGGGGCTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACG                                    >  SRR4302540.256064/1‑94 (MQ=60)

                                                            TAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGG                                   <  SRR4302540.10015008/94‑1 (MQ=60)

                                                            TAATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGG                                   <  SRR4302540.1500940/94‑1 (MQ=60)

                                                             AATAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGG                                  <  SRR4302540.5959783/94‑1 (MQ=60)

                                                              ATAACGATCCTGCACCCCCGGATAGGGGTTTGTCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGA                                 <  SRR4302540.8832336/94‑1 (MQ=60)

                                                               TAACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAA                                <  SRR4302540.3868105/94‑1 (MQ=60)

                                                                AACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAAT                               >  SRR4302540.6664131/1‑94 (MQ=60)

                                                                AACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAAT                               >  SRR4302540.9110000/1‑94 (MQ=60)

                                                                AACGATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAAT                               <  SRR4302540.5052113/94‑1 (MQ=60)

                                                                   GATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTT                            >  SRR4302540.8195594/1‑94 (MQ=60)

                                                                    ATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTA                           >  SRR4302540.8950638/1‑94 (MQ=60)

                                                                    ATCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGCATTGTTGTCACAATAGACGGGAATTTTA                           >  SRR4302540.9070077/1‑94 (MQ=60)

                                                                     TCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAA                          <  SRR4302540.1339683/94‑1 (MQ=60)

                                                                     TCCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAA                          >  SRR4302540.4083779/1‑94 (MQ=60)

                                                                     TCCTGCACCCCCGGATAAGGGTTTGCCCAGGCGTAGACATGATCGCTTTCAAAGTTGCCGTTGGTATTGTTATCACAATAGACGGCAATTTTAA                          >  SRR4302540.10057192/1‑94 (MQ=60)

                                                                      CCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAAT                         <  SRR4302540.2256734/94‑1 (MQ=60)

                                                                      CCTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAAT                         <  SRR4302540.3944673/94‑1 (MQ=60)

                                                                       CTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATA                        >  SRR4302540.3836778/1‑94 (MQ=60)

                                                                       CTGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATA                        <  SRR4302540.9254032/94‑1 (MQ=60)

                                                                       CTGCACCCCCGGATAGGGGCTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATA                        >  SRR4302540.7914706/1‑94 (MQ=60)

                                                                        TGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATAT                       >  SRR4302540.6078908/1‑94 (MQ=60)

                                                                        TGCACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATAT                       <  SRR4302540.532690/94‑1 (MQ=60)

                                                                          CACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCG                     <  SRR4302540.4604277/94‑1 (MQ=60)

                                                                          CACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCG                     <  SRR4302540.10073602/94‑1 (MQ=60)

                                                                          CACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCG                     >  SRR4302540.5106470/1‑94 (MQ=60)

                                                                           ACCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGT                    >  SRR4302540.3773230/1‑94 (MQ=60)

                                                                            CCCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTC                   <  SRR4302540.8079114/94‑1 (MQ=60)

                                                                             CCCCGGATAGGGGTTTGCGCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGCTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCA                  <  SRR4302540.6049315/94‑1 (MQ=60)

                                                                             CCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCA                  <  SRR4302540.3518605/94‑1 (MQ=60)

                                                                             CCCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCA                  >  SRR4302540.2626936/1‑94 (MQ=60)

                                                                              CCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAG                 <  SRR4302540.9694244/94‑1 (MQ=60)

                                                                              CCCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAG                 >  SRR4302540.6734517/1‑94 (MQ=60)

                                                                               CCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGA                <  SRR4302540.4313390/94‑1 (MQ=60)

                                                                               CCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGA                >  SRR4302540.8939450/1‑94 (MQ=60)

                                                                               CCGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTAAGA                <  SRR4302540.2783745/94‑1 (MQ=60)

                                                                                CGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGAT               <  SRR4302540.9555151/94‑1 (MQ=60)

                                                                                CGGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGAT               <  SRR4302540.2426658/94‑1 (MQ=60)

                                                                                 GGATAGGGGTTTGCCCAGGCGTAGACCTGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATT              >  SRR4302540.4662350/1‑94 (MQ=60)

                                                                                 GGATAGGGGTTTGCCCAGGCGTAGACATGCTCTCTTTCAAAGTTGCCGTTGGTAGTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATT              <  SRR4302540.4660112/94‑1 (MQ=60)

                                                                                 GGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATT              <  SRR4302540.4393506/94‑1 (MQ=60)

                                                                                 GGATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGGATTTGTGTCACAATAGACGGGAATTTTAAAATCCTCAGATT              >  SRR4302540.4929943/1‑94 (MQ=60)

                                                                                  GATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTC             <  SRR4302540.3813318/94‑1 (MQ=60)

                                                                                  GATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTC             <  SRR4302540.2344790/94‑1 (MQ=60)

                                                                                   ATAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCC            >  SRR4302540.5323039/1‑94 (MQ=60)

                                                                                    TAGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCC           <  SRR4302540.6744545/94‑1 (MQ=60)

                                                                                     AGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCA          <  SRR4302540.4528247/94‑1 (MQ=60)

                                                                                     AGGGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCA          >  SRR4302540.2816416/1‑94 (MQ=60)

                                                                                       GGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGA        >  SRR4302540.1317936/1‑94 (MQ=60)

                                                                                       GGGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGA        <  SRR4302540.3758406/94‑1 (MQ=60)

                                                                                        GTTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGAT       <  SRR4302540.4563999/94‑1 (MQ=60)

                                                                                        GGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGAT       >  SRR4302540.8181709/1‑94 (MQ=60)

                                                                                        GGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGAT       <  SRR4302540.1395426/94‑1 (MQ=60)

                                                                                        GGTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGAT       <  SRR4302540.245917/94‑1 (MQ=60)

                                                                                         GTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATC      >  SRR4302540.8802136/1‑94 (MQ=60)

                                                                                         GTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATC      >  SRR4302540.10160904/1‑94 (MQ=60)

                                                                                         GTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATC      >  SRR4302540.8031286/1‑94 (MQ=60)

                                                                                         GTTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATC      >  SRR4302540.8031285/1‑94 (MQ=60)

                                                                                          TTTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCT     <  SRR4302540.9373906/94‑1 (MQ=60)

                                                                                           TTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTT    >  SRR4302540.10062101/1‑94 (MQ=60)

                                                                                           TTGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTT    <  SRR4302540.6311535/94‑1 (MQ=60)

                                                                                            TGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTA   >  SRR4302540.8467994/1‑94 (MQ=60)

                                                                                            TGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTA   >  SRR4302540.7937820/1‑94 (MQ=60)

                                                                                            TGCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTA   >  SRR4302540.6441395/1‑94 (MQ=60)

                                                                                             GCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTAT  <  SRR4302540.9691099/94‑1 (MQ=60)

                                                                                             GCCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTAT  <  SRR4302540.7295933/94‑1 (MQ=60)

ATGCGACTTTTTCCCAGACTGGCATCGTAATCGACACCGTTGTATGTCACGCCGAGTTGATAATAACGATCCTGCACCCCCGGATAGGGGTTTACCCAGGCGTAGACATGCTCGCTTTCAAAGTTGCCGTTGGTATTGTTGTCACAATAGACGGGAATTTTAATATCGTCAGATTCCCAGATCTTAT  >  NC_000913/747859‑748045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`