Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	810,837	T→C	A31A (GCT→GCC)	bioC →	BioC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	810,837	0	T	C	100.0%	811.8 / NA	249	A31A (GCT→GCC)	bioC	BioC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/113); total (136/113)

Only 100 of 253 total aligned reads displayed.

GGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCG  >  NC_000913/810747‑810926

ggCAACGTTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGa                                                                                         <  2:563907/93‑1 (MQ=255)

 gCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGAc                                                                                        >  2:3708573/1‑93 (MQ=255)

   aaCGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGc                                                                                      >  2:3752864/1‑93 (MQ=255)

   aaCGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGc                                                                                      >  1:1736619/1‑93 (MQ=255)

      ggTTAATAACCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCtt                                                                                   <  1:5353126/93‑1 (MQ=255)

      ggTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCtt                                                                                   >  2:1859804/1‑93 (MQ=255)

      ggTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCtt                                                                                   <  1:2043613/93‑1 (MQ=255)

      ggTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCtt                                                                                   <  1:3930029/93‑1 (MQ=255)

       gTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTa                                                                                  <  2:6261384/93‑1 (MQ=255)

       gTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTa                                                                                  >  2:1581423/1‑93 (MQ=255)

       gTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTa                                                                                  >  1:2747730/1‑93 (MQ=255)

        ttAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTAc                                                                                 <  2:673974/93‑1 (MQ=255)

            taaACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGc                                                                             >  2:4222183/1‑93 (MQ=255)

            taaACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGc                                                                             >  1:5869737/1‑93 (MQ=255)

            taaACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGc                                                                             >  2:3992977/1‑93 (MQ=255)

             aaaCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCa                                                                            >  2:2222428/1‑93 (MQ=255)

             aaaCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCa                                                                            >  2:3806715/1‑93 (MQ=255)

              aaCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCaa                                                                           <  1:3246706/93‑1 (MQ=255)

              aaCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCaa                                                                           >  1:5783853/1‑93 (MQ=255)

               aCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAAt                                                                          <  1:920538/93‑1 (MQ=255)

                 aaGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGc                                                                        <  1:2613634/93‑1 (MQ=255)

                  aGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCt                                                                       <  1:4644140/93‑1 (MQ=255)

                   gCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCtt                                                                      >  1:759453/1‑93 (MQ=255)

                     cATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTcc                                                                    >  1:2414811/1‑93 (MQ=255)

                      aTTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTATTGGCAATGCTTCca                                                                   <  2:2024523/93‑1 (MQ=255)

                      aTTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCca                                                                   >  2:2949408/1‑93 (MQ=255)

                       ttGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCcac                                                                  <  1:2221432/93‑1 (MQ=255)

                       ttGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCcac                                                                  >  1:6079176/1‑93 (MQ=255)

                       ttGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCcac                                                                  <  1:415995/93‑1 (MQ=255)

                        tGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCcaca                                                                 <  2:4540142/93‑1 (MQ=255)

                         gCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAg                                                                <  2:1135875/93‑1 (MQ=255)

                           aGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGACCACGCCTTACTGGCAATGCTTTCACAGCg                                                              >  2:1745363/1‑93 (MQ=255)

                            gCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGt                                                             <  1:6213066/93‑1 (MQ=255)

                            gCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGt                                                             >  2:6289747/1‑93 (MQ=255)

                               gCATTTGCTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTaaa                                                          <  1:3908498/93‑1 (MQ=255)

                                 aTTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATa                                                        <  2:4692901/93‑1 (MQ=255)

                                 aTTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATa                                                        >  1:369546/1‑93 (MQ=255)

                                  tttGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATac                                                       >  1:1045462/1‑93 (MQ=255)

                                  tttGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATac                                                       >  2:3934764/1‑93 (MQ=255)

                                  tttGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATac                                                       <  2:5109776/93‑1 (MQ=255)

                                   ttGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATaca                                                      <  2:2132285/93‑1 (MQ=255)

                                    tGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATacac                                                     <  1:5446729/93‑1 (MQ=255)

                                     ggTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACAcc                                                    <  1:2645768/93‑1 (MQ=255)

                                      gTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGTCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACAccc                                                   >  1:3406739/1‑93 (MQ=255)

                                       tCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCa                                                  <  2:6147485/93‑1 (MQ=255)

                                         gggCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACg                                                >  1:91630/1‑93 (MQ=255)

                                          ggCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGt                                               <  1:2076604/93‑1 (MQ=255)

                                              gCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTg                                           <  2:2842407/93‑1 (MQ=255)

                                               ccGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCCCGTACTgg                                          <  1:2289160/93‑1 (MQ=255)

                                               ccGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTgg                                          >  2:3403957/1‑93 (MQ=255)

                                                cGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGa                                         >  2:1975036/1‑93 (MQ=255)

                                                cGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGa                                         >  2:883576/1‑93 (MQ=255)

                                                 gCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGAc                                        <  1:1244717/93‑1 (MQ=255)

                                                  cacaCTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGCAcg                                       >  1:4996462/1‑93 (MQ=255)

                                                   acacTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGAcgc                                      >  2:3077604/1‑93 (MQ=255)

                                                    cacTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGAcgcg                                     >  1:1714331/1‑93 (MQ=255)

                                                     acTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCgg                                    >  2:1661994/1‑93 (MQ=255)

                                                     acTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCgg                                    >  1:4741288/1‑93 (MQ=255)

                                                       tATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGt                                  >  2:3159016/1‑93 (MQ=255)

                                                        aTGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATCCACCCACGTACTGGACGCGGGtt                                 <  2:1174986/93‑1 (MQ=255)

                                                        aTGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGtt                                 >  2:645092/1‑93 (MQ=255)

                                                        aTGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGtt                                 >  2:3192379/1‑93 (MQ=255)

                                                          gAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTtgt                               <  2:2646864/93‑1 (MQ=255)

                                                            gCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTgg                             <  1:6297734/93‑1 (MQ=255)

                                                              aaCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAc                           >  1:5928828/1‑93 (MQ=255)

                                                              aaCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAc                           >  2:5842548/1‑93 (MQ=255)

                                                              aaCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAc                           >  1:2277194/1‑93 (MQ=255)

                                                              aaCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAc                           >  1:2972358/1‑93 (MQ=255)

                                                              aaCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAc                           >  1:4623117/1‑93 (MQ=255)

                                                               aCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAcc                          <  2:1568992/93‑1 (MQ=255)

                                                               aCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAcc                          <  1:3762581/93‑1 (MQ=255)

                                                               aCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAcc                          <  2:4792262/93‑1 (MQ=255)

                                                                cATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACct                         >  2:2478394/1‑93 (MQ=255)

                                                                 aTGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACctg                        <  1:1441020/93‑1 (MQ=255)

                                                                  tGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACctgg                       >  1:131013/1‑93 (MQ=255)

                                                                  tGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGAGTTGTGGACctgg                       >  1:3604355/1‑93 (MQ=255)

                                                                     aGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACctggctg                    <  1:198501/93‑1 (MQ=255)

                                                                      gATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACctggctgg                   >  2:5266685/1‑93 (MQ=255)

                                                                       aTCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGa                  >  1:2505622/1‑93 (MQ=255)

                                                                         cTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATg                >  2:4960424/1‑93 (MQ=255)

                                                                         cTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATg                >  2:4370360/1‑93 (MQ=255)

                                                                            cAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgc             >  1:4210804/1‑93 (MQ=255)

                                                                            cAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgc             <  1:4821089/93‑1 (MQ=255)

                                                                            cAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgc             <  1:3116873/93‑1 (MQ=255)

                                                                            cAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTATGGACCTGGCTGGATGAgc             <  2:6124298/93‑1 (MQ=255)

                                                                             aGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgcc            >  1:4479263/1‑93 (MQ=255)

                                                                             aGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgcc            >  2:3260086/1‑93 (MQ=255)

                                                                             aGCGCCAGAGTGCCGACGCCTTACTGGAAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgcc            <  1:285026/93‑1 (MQ=255)

                                                                                gcCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAgccgcc         >  2:3776992/1‑93 (MQ=255)

                                                                                 ccAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCa        >  2:3431100/1‑93 (MQ=255)

                                                                                  cAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCAc       <  1:1810275/93‑1 (MQ=255)

                                                                                   agagTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACt      >  2:1834724/1‑93 (MQ=255)

                                                                                    gagTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTg     >  1:244085/1‑93 (MQ=255)

                                                                                    gagTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTg     >  2:2404757/1‑93 (MQ=255)

                                                                                    gagTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTg     >  1:1637042/1‑93 (MQ=255)

                                                                                     agTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTgg    <  2:5946749/93‑1 (MQ=255)

                                                                                      gTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGc   >  1:438474/1‑93 (MQ=255)

                                                                                      gTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGc   >  1:4507229/1‑93 (MQ=255)

                                                                                       tGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCg  <  1:3536931/93‑1 (MQ=255)

                                                                                       tGCCGACGCCTTACTGGCAAGGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCg  <  1:47225/93‑1 (MQ=255)

GGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCG  >  NC_000913/810747‑810926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCGGG  >  NC_000913/810744‑810928

CATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCC                                                                                             <  SRR4302533.2723935/94‑1 (MQ=60)

CATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCC                                                                                             >  SRR4302533.2364942/1‑94 (MQ=60)

 ATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCG                                                                                            <  SRR4302533.447516/94‑1 (MQ=60)

 ATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCG                                                                                            >  SRR4302533.2627616/1‑94 (MQ=60)

 ATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCG                                                                                            >  SRR4302533.331323/1‑94 (MQ=60)

  TGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGA                                                                                           <  SRR4302533.3178258/94‑1 (MQ=60)

   GGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGAC                                                                                          <  SRR4302533.1298133/94‑1 (MQ=60)

    GCAACGTTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACG                                                                                         <  SRR4302533.2123/94‑1 (MQ=60)

    GCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACG                                                                                         >  SRR4302533.2697202/1‑94 (MQ=60)

    GCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACG                                                                                         >  SRR4302533.4509511/1‑94 (MQ=60)

     CAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGC                                                                                        >  SRR4302533.227708/1‑94 (MQ=60)

     CAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGC                                                                                        >  SRR4302533.1747157/1‑94 (MQ=60)

      AACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCC                                                                                       <  SRR4302533.2556351/94‑1 (MQ=60)

         GGTTAATAACCAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTA                                                                                    <  SRR4302533.5385254/94‑1 (MQ=60)

         GGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTA                                                                                    <  SRR4302533.3954022/94‑1 (MQ=60)

         GGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTA                                                                                    >  SRR4302533.2278263/1‑94 (MQ=60)

         GGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTA                                                                                    >  SRR4302533.2764574/1‑94 (MQ=60)

         GGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTA                                                                                    <  SRR4302533.2056212/94‑1 (MQ=60)

          GTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTAC                                                                                   <  SRR4302533.3900168/94‑1 (MQ=60)

           TTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACT                                                                                  <  SRR4302533.4655002/94‑1 (MQ=60)

              ATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGC                                                                               >  SRR4302533.2302320/1‑94 (MQ=60)

              ATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGC                                                                               >  SRR4302533.5905216/1‑94 (MQ=60)

              ATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGC                                                                               >  SRR4302533.2467489/1‑94 (MQ=60)

              ATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGC                                                                               >  SRR4302533.4692632/1‑94 (MQ=60)

                AAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAA                                                                             <  SRR4302533.1957584/94‑1 (MQ=60)

                AAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAA                                                                             >  SRR4302533.5818784/1‑94 (MQ=60)

                 AACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAAT                                                                            <  SRR4302533.3266724/94‑1 (MQ=60)

                 AACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAAT                                                                            <  SRR4302533.3490086/94‑1 (MQ=60)

                  ACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATG                                                                           >  SRR4302533.2072856/1‑94 (MQ=60)

                  ACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATG                                                                           <  SRR4302533.925943/94‑1 (MQ=60)

                   CAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGC                                                                          >  SRR4302533.3204615/1‑94 (MQ=60)

                    AAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCT                                                                         <  SRR4302533.2629676/94‑1 (MQ=60)

                     AGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTT                                                                        >  SRR4302533.763924/1‑94 (MQ=60)

                     AGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTT                                                                        <  SRR4302533.4672328/94‑1 (MQ=60)

                     AGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTT                                                                        <  SRR4302533.4672275/94‑1 (MQ=60)

                     AGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTT                                                                        >  SRR4302533.4300533/1‑94 (MQ=60)

                       CCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCC                                                                      >  SRR4302533.2429727/1‑94 (MQ=60)

                       CCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCC                                                                      >  SRR4302533.3670340/1‑94 (MQ=60)

                         ATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCAC                                                                    >  SRR4302533.2337607/1‑94 (MQ=60)

                         ATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCAC                                                                    >  SRR4302533.6115943/1‑94 (MQ=60)

                          TTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACA                                                                   <  SRR4302533.5912099/94‑1 (MQ=60)

                          TTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACA                                                                   <  SRR4302533.418495/94‑1 (MQ=60)

                          TTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACA                                                                   <  SRR4302533.5257060/94‑1 (MQ=60)

                          TTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACA                                                                   <  SRR4302533.2235151/94‑1 (MQ=60)

                           TGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAG                                                                  <  SRR4302533.6284490/94‑1 (MQ=60)

                           TGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAG                                                                  <  SRR4302533.475162/94‑1 (MQ=60)

                              AGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGT                                                               >  SRR4302533.4075601/1‑94 (MQ=60)

                               GCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTA                                                              <  SRR4302533.6250319/94‑1 (MQ=60)

                                CGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAA                                                             <  SRR4302533.1258557/94‑1 (MQ=60)

                                 GGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAA                                                            >  SRR4302533.5494003/1‑94 (MQ=60)

                                  GCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAAT                                                           <  SRR4302533.1556162/94‑1 (MQ=60)

                                  GCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAAT                                                           <  SRR4302533.2640354/94‑1 (MQ=60)

                                  GCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAAT                                                           <  SRR4302533.3723119/94‑1 (MQ=60)

                                  GCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAAT                                                           <  SRR4302533.813169/94‑1 (MQ=60)

                                  GCATTTGCTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAAT                                                           <  SRR4302533.3932368/94‑1 (MQ=60)

                                   CATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATA                                                          <  SRR4302533.5867567/94‑1 (MQ=60)

                                   CATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATA                                                          >  SRR4302533.269970/1‑94 (MQ=60)

                                   CATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATA                                                          >  SRR4302533.371776/1‑94 (MQ=60)

                                    ATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATAC                                                         >  SRR4302533.2455302/1‑94 (MQ=60)

                                    ATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATAC                                                         >  SRR4302533.1051607/1‑94 (MQ=60)

                                    ATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATAC                                                         >  SRR4302533.1726518/1‑94 (MQ=60)

                                     TTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACA                                                        <  SRR4302533.804071/94‑1 (MQ=60)

                                     TTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACA                                                        <  SRR4302533.2912498/94‑1 (MQ=60)

                                       TGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACC                                                      <  SRR4302533.5479541/94‑1 (MQ=60)

                                        GGTCGGGCAGCCGCACACTATGAGCCACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTAGCAATGCTTCCACAGCGTAActgcagcc                                                     >  SRR4302533.3920597/1‑86 (MQ=60)

                                        GGTCGGGCAGCCGCACACTATGAGCAGCATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCC                                                     <  SRR4302533.2607997/94‑1 (MQ=60)

                                        GGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGTCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCC                                                     >  SRR4302533.3427779/1‑94 (MQ=60)

                                        GGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCC                                                     <  SRR4302533.2662026/94‑1 (MQ=60)

                                        GGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCC                                                     >  SRR4302533.3920595/1‑94 (MQ=60)

                                         GTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCA                                                    >  SRR4302533.5240914/1‑94 (MQ=60)

                                         GTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCA                                                    >  SRR4302533.2458676/1‑94 (MQ=60)

                                         GTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCA                                                    <  SRR4302533.2341632/94‑1 (MQ=60)

                                          TCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCAC                                                   <  SRR4302533.5560229/94‑1 (MQ=60)

                                          TCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCAC                                                   >  SRR4302533.2075483/1‑94 (MQ=60)

                                           CGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACG                                                  >  SRR4302533.92210/1‑94 (MQ=60)

                                             GGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTA                                                <  SRR4302533.2089385/94‑1 (MQ=60)

                                                AGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTG                                             <  SRR4302533.715332/94‑1 (MQ=60)

                                                 GCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGG                                            >  SRR4302533.2785801/1‑94 (MQ=60)

                                                  CCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCCCGTACTGGA                                           <  SRR4302533.2303334/94‑1 (MQ=60)

                                                  CCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGA                                           <  SRR4302533.4820427/94‑1 (MQ=60)

                                                   CGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGAC                                          >  SRR4302533.5944613/1‑94 (MQ=60)

                                                    GCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACG                                         <  SRR4302533.1252149/94‑1 (MQ=60)

                                                    GCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGCACG                                         >  SRR4302533.5026754/1‑94 (MQ=60)

                                                     CACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGC                                        >  SRR4302533.5971603/1‑94 (MQ=60)

                                                      ACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCG                                       >  SRR4302533.1724724/1‑94 (MQ=60)

                                                       CACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGG                                      <  SRR4302533.3631445/94‑1 (MQ=60)

                                                       CACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGG                                      >  SRR4302533.4770034/1‑94 (MQ=60)

                                                       CACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGG                                      >  SRR4302533.182352/1‑94 (MQ=60)

                                                        ACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGG                                     >  SRR4302533.3581058/1‑94 (MQ=60)

                                                         CTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGT                                    >  SRR4302533.1817227/1‑94 (MQ=60)

                                                           ATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTG                                  <  SRR4302533.3937542/94‑1 (MQ=60)

                                                           ATGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTG                                  >  SRR4302533.4596519/1‑94 (MQ=60)

                                                            TGAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGT                                 >  SRR4302533.997348/1‑94 (MQ=60)

                                                             GAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTG                                <  SRR4302533.3367376/94‑1 (MQ=60)

                                                             GAGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTG                                <  SRR4302533.4275933/94‑1 (MQ=60)

                                                              AGCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGG                               >  SRR4302533.3434809/1‑94 (MQ=60)

                                                               GCAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGA                              <  SRR4302533.6335322/94‑1 (MQ=60)

                                                                CAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAC                             >  SRR4302533.2990546/1‑94 (MQ=60)

                                                                CAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAC                             >  SRR4302533.1184462/1‑94 (MQ=60)

                                                                CAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAC                             >  SRR4302533.5964664/1‑94 (MQ=60)

                                                                CAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAC                             >  SRR4302533.2291297/1‑94 (MQ=60)

                                                                CAACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGAC                             >  SRR4302533.4651141/1‑94 (MQ=60)

                                                                 AACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACC                            <  SRR4302533.2035631/94‑1 (MQ=60)

                                                                  ACATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCT                           <  SRR4302533.3785646/94‑1 (MQ=60)

                                                                   CATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTG                          >  SRR4302533.4207506/1‑94 (MQ=60)

                                                                    ATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGG                         >  SRR4302533.131837/1‑94 (MQ=60)

                                                                    ATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGG                         <  SRR4302533.5412361/94‑1 (MQ=60)

                                                                    ATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGG                         <  SRR4302533.1449714/94‑1 (MQ=60)

                                                                    ATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGG                         >  SRR4302533.3150871/1‑94 (MQ=60)

                                                                    ATGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGAGTTGTGGACCTGG                         >  SRR4302533.3626539/1‑94 (MQ=60)

                                                                     TGCAGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGC                        <  SRR4302533.1353041/94‑1 (MQ=60)

                                                                        AGATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGG                     <  SRR4302533.199755/94‑1 (MQ=60)

                                                                         GATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGA                    >  SRR4302533.2521070/1‑94 (MQ=60)

                                                                          ATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGAT                   <  SRR4302533.6154118/94‑1 (MQ=60)

                                                                          ATCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGAT                   >  SRR4302533.3090571/1‑94 (MQ=60)

                                                                           TCTACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATG                  >  SRR4302533.5021928/1‑94 (MQ=60)

                                                                              ACAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGC               >  SRR4302533.4236273/1‑94 (MQ=60)

                                                                               CAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCC              <  SRR4302533.922637/94‑1 (MQ=60)

                                                                               CAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCC              >  SRR4302533.4506361/1‑94 (MQ=60)

                                                                               CAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCC              <  SRR4302533.4850301/94‑1 (MQ=60)

                                                                               CAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCC              <  SRR4302533.4796398/94‑1 (MQ=60)

                                                                               CAGCGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCC              <  SRR4302533.3136034/94‑1 (MQ=60)

                                                                                AGCGCCAGAGTGCCGACGCCTTACTGGAAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCG             <  SRR4302533.286768/94‑1 (MQ=60)

                                                                                  CGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCC           <  SRR4302533.2945300/94‑1 (MQ=60)

                                                                                  CGCCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCC           >  SRR4302533.15566/1‑94 (MQ=60)

                                                                                    CCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCAC         <  SRR4302533.6210307/94‑1 (MQ=60)

                                                                                    CCAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCAC         >  SRR4302533.4571495/1‑94 (MQ=60)

                                                                                     CAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACT        <  SRR4302533.1821336/94‑1 (MQ=60)

                                                                                     CAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACT        >  SRR4302533.711416/1‑94 (MQ=60)

                                                                                     CAGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACT        >  SRR4302533.1708030/1‑94 (MQ=60)

                                                                                      AGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTG       >  SRR4302533.1646955/1‑94 (MQ=60)

                                                                                      AGAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTG       >  SRR4302533.245598/1‑94 (MQ=60)

                                                                                       GAGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGG      <  SRR4302533.4446598/94‑1 (MQ=60)

                                                                                        AGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGC     >  SRR4302533.4534525/1‑94 (MQ=60)

                                                                                        AGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGC     <  SRR4302533.4499832/94‑1 (MQ=60)

                                                                                        AGTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGC     >  SRR4302533.441086/1‑94 (MQ=60)

                                                                                         GTGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCG    <  SRR4302533.4151/94‑1 (MQ=60)

                                                                                          TGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCGG   <  SRR4302533.3558730/94‑1 (MQ=60)

                                                                                          TGCCGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCGG   <  SRR4302533.1745199/94‑1 (MQ=60)

                                                                                          TGCCGACGCCTTACTGGCAAGGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCGG   <  SRR4302533.47552/94‑1 (MQ=60)

                                                                                           GCAGACGCCTTACTGGCAATGCTTCCACAGCTTAAATGCACCCACGTACTGGAGGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCGGG  <  SRR4302533.1950404/94‑1 (MQ=60)

CATGGCAACGGTTAATAAACAAGCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGGCAATGCTTCCACAGCGTAAATACACCCACGTACTGGACGCGGGTTGTGGACCTGGCTGGATGAGCCGCCACTGGCGGG  >  NC_000913/810744‑810928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`