Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
823,777 |
(A)5→6 |
intergenic (‑57/‑76) |
ybhP ← / → ybhQ |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 823,772 | 1 | . | A | 99.4%
| 654.7
/ ‑3.8
| 174 | intergenic (‑52/‑81) | ybhP/ybhQ | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (87/86); total (88/86) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
Only 100 of 194 total aligned reads displayed.
TGAGCACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGT > NC_000913/823681‑823859
|
gAGCACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aa > 2:5816337/1‑93 (MQ=255)
aCCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaa > 1:5866454/1‑92 (MQ=255)
aCCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaa < 2:1489649/93‑2 (MQ=255)
ccTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaag > 2:3333561/1‑91 (MQ=255)
ttGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaaggt < 2:4043330/93‑5 (MQ=255)
ttGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaaggt > 1:1648051/1‑89 (MQ=255)
ttGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaaggg > 1:1281245/1‑89 (MQ=255)
ttGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaaggg > 1:3520214/1‑89 (MQ=255)
ttGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑aaa‑aaaggc > 1:2981211/1‑89 (MQ=255)
gAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGc < 2:5436020/93‑1 (MQ=255)
aaCGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCg < 2:6226801/93‑1 (MQ=255)
cGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGt > 2:3726451/1‑93 (MQ=255)
gAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTc < 1:1028988/93‑1 (MQ=255)
gAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTc > 2:2970458/1‑93 (MQ=255)
aaaaTTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCt < 2:3213331/93‑1 (MQ=255)
aaaTTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAATTAGTGTAGTCGGCGTCAC‑AAACAAGGTGCGGTCtt > 1:38882/1‑93 (MQ=255)
aaaTTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCtt < 1:938932/93‑1 (MQ=255)
aaTTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTa > 2:1312561/1‑93 (MQ=255)
aTTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTAc < 1:4731186/93‑1 (MQ=255)
gtgtTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAAtt < 1:1528663/93‑1 (MQ=255)
tgtTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAAttt < 1:2469543/93‑1 (MQ=255)
tttGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTc > 2:5767678/1‑93 (MQ=255)
tttGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTc < 2:692261/93‑1 (MQ=255)
ttGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTcc < 1:3438041/93‑1 (MQ=255)
gATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGt < 1:5409839/93‑1 (MQ=255)
gATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGt > 2:5629333/1‑93 (MQ=255)
gATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGt > 2:3297459/1‑93 (MQ=255)
gATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGt > 1:5142988/1‑93 (MQ=255)
ggCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGt > 2:5911544/1‑93 (MQ=255)
aTAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCg > 1:6224034/1‑93 (MQ=255)
tAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCgg > 2:3947067/1‑93 (MQ=255)
aaTTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGt > 2:1884187/1‑93 (MQ=255)
aTTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTa > 1:1794428/1‑93 (MQ=255)
ttttCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTAc < 2:2732627/93‑1 (MQ=255)
ttttCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTAc > 2:2540387/1‑93 (MQ=255)
ttCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTGCGTAAAGTTCGGTActc > 2:3480429/1‑93 (MQ=255)
ttCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTActc > 2:652098/1‑93 (MQ=255)
ccTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTg > 2:3784469/1‑93 (MQ=255)
cTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGa > 2:2059336/1‑93 (MQ=255)
cTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGa < 1:5623206/93‑1 (MQ=255)
cTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCAGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTACAGTTCGGTACTCTGa > 2:921583/1‑93 (MQ=255)
tGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGag < 1:2850178/93‑1 (MQ=255)
tGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGag > 1:1407544/1‑93 (MQ=255)
cTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaa < 1:633007/93‑1 (MQ=255)
cTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaa < 1:5283310/93‑1 (MQ=255)
cTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaa < 2:4936847/93‑1 (MQ=255)
tttGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaag > 1:2888225/1‑93 (MQ=255)
tttGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaag > 1:4578233/1‑93 (MQ=255)
tttGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaag > 2:5282398/1‑93 (MQ=255)
tGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaagta > 2:4123651/1‑93 (MQ=255)
tGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGagtaagta > 2:4315219/1‑93 (MQ=255)
gCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTag < 1:3333561/93‑1 (MQ=255)
gCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTag > 2:1376935/1‑93 (MQ=255)
gCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGAGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTag > 2:4904575/1‑93 (MQ=255)
ccTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTaga < 2:1235499/93‑1 (MQ=255)
ccTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTaga < 2:4378367/93‑1 (MQ=255)
ccTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTaga < 2:4731916/93‑1 (MQ=255)
ctctTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTagag > 2:5062959/1‑93 (MQ=255)
ctctTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTagag > 1:2432058/1‑93 (MQ=255)
tctTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAgaga < 2:2751445/93‑1 (MQ=255)
tctTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAgaga > 2:4160333/1‑93 (MQ=255)
tctTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGGGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAgaga > 2:1158254/1‑93 (MQ=255)
ctcaTCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGAt > 2:4690409/4‑93 (MQ=255)
ttATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATa > 1:5229725/1‑93 (MQ=255)
ttATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATa < 2:1036174/93‑1 (MQ=255)
tATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATaa < 2:602224/93‑1 (MQ=255)
aTCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATaaa < 1:614211/93‑1 (MQ=255)
tctcATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAt < 1:4511203/93‑1 (MQ=255)
tctcATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAt > 1:4134670/1‑93 (MQ=255)
tcATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAttc < 1:532440/93‑1 (MQ=255)
aTTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAttctt < 1:1011952/93‑1 (MQ=255)
aTTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAttctt < 1:5069732/93‑1 (MQ=255)
tGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCa < 1:2099764/93‑1 (MQ=255)
tGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCa > 2:5314600/1‑93 (MQ=255)
aaTAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGga < 1:2651236/93‑1 (MQ=255)
aaTAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGga > 2:6309209/1‑93 (MQ=255)
aaTAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGga < 2:145762/93‑1 (MQ=255)
tAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgaga > 2:4998974/1‑93 (MQ=255)
tAGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgaga < 2:1560145/93‑1 (MQ=255)
aGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgagag > 1:823246/1‑93 (MQ=255)
aGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgagag < 2:749738/93‑1 (MQ=255)
aGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgagag < 1:2502780/93‑1 (MQ=255)
aGTGTAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgagag < 2:1270380/93‑1 (MQ=255)
gtgtAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGgagaga < 1:116650/93‑1 (MQ=255)
gtAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAg > 1:1368953/1‑93 (MQ=255)
gtAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAg < 1:5539884/93‑1 (MQ=255)
gtAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAg < 2:4013102/93‑1 (MQ=255)
tAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGc > 2:4089593/1‑93 (MQ=255)
tAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGc > 2:6107703/1‑93 (MQ=255)
tAGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGc > 1:1889502/1‑93 (MQ=255)
aGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGcc < 1:4806850/93‑1 (MQ=255)
aGTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGcc < 2:1917208/93‑1 (MQ=255)
gTCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCa > 1:3660614/1‑93 (MQ=255)
tCGGCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCAt < 2:1279766/93‑1 (MQ=255)
ggCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGa > 1:2300222/1‑93 (MQ=255)
ggCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGa < 2:4464450/93‑1 (MQ=255)
gCGTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGaa > 2:3407/1‑93 (MQ=255)
gCGTCACAAAA‑AAGGTACGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGaa < 2:3545694/93‑1 (MQ=255)
gTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGt > 2:5642370/1‑93 (MQ=255)
gTCACAAAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGt < 2:5193800/93‑1 (MQ=255)
|
TGAGCACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAGGTGCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGT > NC_000913/823681‑823859
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAACG > NC_000913/823685‑823869
|
CACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAA > SRR4302533.5901917/1‑94 (MQ=60)
annnnnnnnnnnantnnttntnnnnGANCGNGCATNATTTTNNTNNNTTTGCCTCTTATCNCATTGAAATANTGTAGTCGGCGTCAC‑AAA‑AAAG < SRR4302533.5408881/69‑1 (MQ=60)
ACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAAG < SRR4302533.2458517/94‑1 (MQ=60)
CTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT < SRR4302533.2961019/94‑1 (MQ=60)
CTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT > SRR4302533.1658033/1‑94 (MQ=60)
CTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAaggg > SRR4302533.1288953/1‑90 (MQ=60)
CTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAaggg > SRR4302533.3541915/1‑90 (MQ=60)
CTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAaggc > SRR4302533.2999446/1‑90 (MQ=60)
TTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑G > SRR4302533.5225128/1‑94 (MQ=60)
GAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCG < SRR4302533.5158925/94‑1 (MQ=60)
AACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGG > SRR4302533.488592/1‑94 (MQ=60)
AACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGG < SRR4302533.4578583/94‑1 (MQ=60)
CGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTC < SRR4302533.6340484/94‑1 (MQ=60)
GAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCT < SRR4302533.1035033/94‑1 (MQ=60)
AAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAATTAGTGTAGTCGGCGTCAC‑AAACAAGGT‑GCGGTCTT > SRR4302533.39139/1‑94 (MQ=60)
AAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTT < SRR4302533.5558436/94‑1 (MQ=60)
AAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGCAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTA > SRR4302533.2665910/1‑94 (MQ=60)
AAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTA < SRR4302533.944448/94‑1 (MQ=60)
ATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACG < SRR4302533.3639040/94‑1 (MQ=60)
ATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACG < SRR4302533.4759870/94‑1 (MQ=60)
TGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGA > SRR4302533.3007576/1‑94 (MQ=60)
GTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTT < SRR4302533.1537859/94‑1 (MQ=60)
TGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTT < SRR4302533.2484777/94‑1 (MQ=60)
TTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCG < SRR4302533.3459274/94‑1 (MQ=60)
TGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGT > SRR4302533.5174070/1‑94 (MQ=60)
GATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTA < SRR4302533.5442361/94‑1 (MQ=60)
TCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAA < SRR4302533.1681389/94‑1 (MQ=60)
TCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAA < SRR4302533.6105211/94‑1 (MQ=60)
CGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAG > SRR4302533.1594592/1‑94 (MQ=60)
CATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCG > SRR4302533.6261332/1‑94 (MQ=60)
ATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGG < SRR4302533.4780675/94‑1 (MQ=60)
ATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGG > SRR4302533.1461505/1‑94 (MQ=60)
AATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTA > SRR4302533.5738425/1‑94 (MQ=60)
AATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTA > SRR4302533.1805349/1‑94 (MQ=60)
TTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCT > SRR4302533.75593/1‑94 (MQ=60)
CTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAG < SRR4302533.5657192/94‑1 (MQ=60)
CTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAG > SRR4302533.1416055/1‑94 (MQ=60)
CTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAG < SRR4302533.2391702/94‑1 (MQ=60)
CTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAG < SRR4302533.1262429/94‑1 (MQ=60)
TGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGT < SRR4302533.2867713/94‑1 (MQ=60)
CTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAG > SRR4302533.2905980/1‑94 (MQ=60)
CTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAG > SRR4302533.4605979/1‑94 (MQ=60)
CTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAG < SRR4302533.5314961/94‑1 (MQ=60)
CTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAG < SRR4302533.636732/94‑1 (MQ=60)
TGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAG < SRR4302533.3518241/94‑1 (MQ=60)
TGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAG > SRR4302533.1309127/1‑94 (MQ=60)
GCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGA < SRR4302533.3354159/94‑1 (MQ=60)
CCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAG > SRR4302533.2447088/1‑94 (MQ=60)
CTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGA > SRR4302533.618791/1‑94 (MQ=60)
CTCTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGA < SRR4302533.1414169/94‑1 (MQ=60)
CTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATA > SRR4302533.2497055/1‑94 (MQ=60)
CTTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATA > SRR4302533.5261183/1‑94 (MQ=60)
TTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAA < SRR4302533.1102389/94‑1 (MQ=60)
TTATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAA < SRR4302533.4059262/94‑1 (MQ=60)
ATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAT < SRR4302533.617820/94‑1 (MQ=60)
ATCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAAT > SRR4302533.4159766/1‑94 (MQ=60)
TCTCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATT < SRR4302533.4538522/94‑1 (MQ=60)
TCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCT > SRR4302533.856609/1‑94 (MQ=60)
TCATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCT < SRR4302533.535606/94‑1 (MQ=60)
ATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTC < SRR4302533.1017873/94‑1 (MQ=60)
ATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTC < SRR4302533.5100344/94‑1 (MQ=60)
ATTGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTC > SRR4302533.4203368/1‑94 (MQ=60)
TGAAATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAG < SRR4302533.2112716/94‑1 (MQ=60)
AATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAG > SRR4302533.187085/1‑94 (MQ=60)
AATAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAG < SRR4302533.2667523/94‑1 (MQ=60)
TAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAG < SRR4302533.4741341/94‑1 (MQ=60)
TAGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAG > SRR4302533.828076/1‑94 (MQ=60)
AGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGA > SRR4302533.5214512/1‑94 (MQ=60)
AGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGA > SRR4302533.988386/1‑94 (MQ=60)
AGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGA < SRR4302533.2518214/94‑1 (MQ=60)
AGTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGA > SRR4302533.3451302/1‑94 (MQ=60)
GTGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAA < SRR4302533.117393/94‑1 (MQ=60)
TGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAG > SRR4302533.1377184/1‑94 (MQ=60)
TGTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAG > SRR4302533.2269479/1‑94 (MQ=60)
GTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGC > SRR4302533.1901042/1‑94 (MQ=60)
GTAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGC < SRR4302533.5573339/94‑1 (MQ=60)
TAGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCC < SRR4302533.2005270/94‑1 (MQ=60)
AGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCA < SRR4302533.4835955/94‑1 (MQ=60)
AGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCA < SRR4302533.2829980/94‑1 (MQ=60)
AGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCA > SRR4302533.3683122/1‑94 (MQ=60)
AGTCGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCA > SRR4302533.5307509/1‑94 (MQ=60)
CGGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGA > SRR4302533.2314478/1‑94 (MQ=60)
GGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAA < SRR4302533.3896090/94‑1 (MQ=60)
GGCGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAA > SRR4302533.5623661/1‑94 (MQ=60)
CGTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGT < SRR4302533.5355311/94‑1 (MQ=60)
GTCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTG > SRR4302533.3470761/1‑94 (MQ=60)
TCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGG < SRR4302533.3107189/94‑1 (MQ=60)
TCACAAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGG > SRR4302533.3892528/1‑94 (MQ=60)
acaAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCA < SRR4302533.4526605/91‑1 (MQ=60)
caAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAA < SRR4302533.3311982/92‑1 (MQ=60)
caAAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAA < SRR4302533.3311981/92‑1 (MQ=60)
A‑AAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAAC < SRR4302533.5230504/94‑1 (MQ=60)
A‑AAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAAC < SRR4302533.1960737/94‑1 (MQ=60)
AAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACA > SRR4302533.828404/1‑94 (MQ=60)
AAA‑AAAGTGGCGGTCTTACGGAATTTTCCGTAAATTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAAC < SRR4302533.340629/94‑1 (MQ=60)
AA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAA < SRR4302533.4676451/94‑1 (MQ=60)
AA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAA > SRR4302533.4968242/1‑94 (MQ=60)
AA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGCAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAA > SRR4302533.4355159/1‑94 (MQ=60)
A‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAAC > SRR4302533.5623578/1‑94 (MQ=60)
A‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAAC < SRR4302533.249596/94‑1 (MQ=60)
A‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAAC < SRR4302533.6334257/94‑1 (MQ=60)
AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGAAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAACG > SRR4302533.2493620/1‑94 (MQ=60)
|
CACCTTGAACGAAAATTGTTGTGTTTGATCGGGCATAATTTTCCTGTCTTTGCCTCTTATCTCATTGAAATAGTGTAGTCGGCGTCAC‑AAA‑AAGGT‑GCGGTCTTACGGAATTTTCCGTAAAGTTCGGTACTCTGAGTAAGTAGAGATAAATTCTTCAGGAGAGAAGCCATGAAGTGGCAACAACG > NC_000913/823685‑823869
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
