Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
888,802 |
(A)7→6 |
coding (241/1686 nt) |
b0847 ← |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 888,796 | 0 | A | . | 99.5%
| 904.9
/ ‑4.0
| 198 | coding (247/1686 nt) | b0847 | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (100/97); minor base G (0/1); total (100/98) |
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 233 total aligned reads displayed.
CAGCTTACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGAAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGT > NC_000913/888704‑888884
|
aGCTTACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaa < 2:4104744/93‑1 (MQ=255)
gCTTACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCCCCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaa < 2:4690960/93‑1 (MQ=255)
gCTTACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaa < 2:2257444/93‑1 (MQ=255)
gCTTACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaa > 1:4766460/1‑93 (MQ=255)
ttACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaa > 2:3245924/1‑93 (MQ=255)
tACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaaa < 1:5631956/93‑1 (MQ=255)
tACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaaa < 2:5664339/93‑1 (MQ=255)
aCCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaaag > 2:6172523/1‑92 (MQ=255)
aCCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaaag < 2:4439982/93‑2 (MQ=255)
ccTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaaagt > 1:5123443/1‑91 (MQ=255)
cTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGaaaaaagtt < 1:2052702/93‑4 (MQ=255)
aaCCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCg < 2:2371287/93‑1 (MQ=255)
aCCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCgg > 2:2505880/1‑93 (MQ=255)
aCCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCgg < 1:467828/93‑1 (MQ=255)
aCCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCgg > 2:3431422/1‑93 (MQ=255)
aCCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCgg > 1:1311959/1‑93 (MQ=255)
cccTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGt < 2:1658590/93‑1 (MQ=255)
ccTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTc > 2:5415454/1‑93 (MQ=255)
ccTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTc > 2:708123/1‑93 (MQ=255)
ccTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTc > 1:2847421/1‑93 (MQ=255)
ccTAAGGCGATCACCAGCGCACTGCCAACCATAACCAGTGCAAAAATAAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTc > 1:3010437/1‑93 (MQ=255)
ccaaGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTcc > 2:3971125/3‑93 (MQ=255)
cTAAGGCGATCACCAGCGCACTGCCAACCATCGCCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTcc < 1:3579346/93‑1 (MQ=255)
tAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTTGGTCCg < 1:4955362/93‑1 (MQ=255)
tAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCg > 1:1392274/1‑93 (MQ=255)
aaGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCgg > 1:2908793/1‑93 (MQ=255)
aGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGc > 2:336035/1‑93 (MQ=255)
ggCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCt > 1:3486068/1‑93 (MQ=255)
cGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTc < 2:4212331/93‑1 (MQ=255)
cGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTc > 2:4397111/1‑93 (MQ=255)
cGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTc < 1:5503125/93‑1 (MQ=255)
cGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTc > 1:669442/1‑93 (MQ=255)
gATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCg > 1:3425872/1‑93 (MQ=255)
aTCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGa < 2:1709004/93‑1 (MQ=255)
aTCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGa > 1:2077074/1‑93 (MQ=255)
tCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAc > 1:3836276/1‑93 (MQ=255)
tCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAc > 2:5132947/1‑93 (MQ=255)
aCCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAccc > 1:3892266/1‑93 (MQ=255)
aCCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAccc < 2:5211563/93‑1 (MQ=255)
ccAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAcccc > 1:696445/1‑93 (MQ=255)
aGCGCACTGCCAGCCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGa < 1:3331296/93‑1 (MQ=255)
aGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGa > 2:556918/1‑93 (MQ=255)
cACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCa < 1:4303809/93‑1 (MQ=255)
aCTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAg > 1:176054/1‑93 (MQ=255)
cTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGa > 2:3735243/1‑93 (MQ=255)
cTGCCAACCATAACCAGTGCTAACATTAGGTAATTGTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGa < 2:1276857/93‑1 (MQ=255)
tGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGaa < 1:3223984/93‑1 (MQ=255)
ccAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGaaaa < 2:3827775/93‑1 (MQ=255)
ccAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGaaaa < 2:4977274/93‑1 (MQ=255)
aaCCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATa > 1:2529742/1‑93 (MQ=255)
tCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAg < 1:1000025/93‑1 (MQ=255)
tCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAg < 1:709961/93‑1 (MQ=255)
tCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAg > 2:4906420/1‑93 (MQ=255)
aCCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCa < 1:4881735/93‑1 (MQ=255)
aCCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCa < 2:4564184/93‑1 (MQ=255)
ccAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCAt > 1:4465963/1‑93 (MQ=255)
cAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATa < 2:4338387/93‑1 (MQ=255)
agcgCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATaa < 1:2278631/90‑1 (MQ=255)
gTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATaaa < 1:1131573/93‑1 (MQ=255)
gTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATaaa < 1:2330444/93‑1 (MQ=255)
cTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGcc < 2:3876679/93‑1 (MQ=255)
aaCATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCaa > 1:5423323/1‑93 (MQ=255)
aCATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAg > 1:2641984/1‑93 (MQ=255)
cATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGa < 2:5828501/93‑1 (MQ=255)
cATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGa < 1:4810515/93‑1 (MQ=255)
aTTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGACAAGAt > 1:5297555/1‑93 (MQ=255)
ttAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAAGAGCCTAAAGCCAAGAta > 2:4013750/1‑92 (MQ=255)
ttAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGAtt > 2:2166242/1‑93 (MQ=255)
ttAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGAtt > 2:1100519/1‑93 (MQ=255)
aGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGTTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTaa < 2:2922485/93‑1 (MQ=255)
aGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTaa < 1:5952765/93‑1 (MQ=255)
aGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTaa > 2:4860285/1‑93 (MQ=255)
aGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTaa < 1:2738215/93‑1 (MQ=255)
ggTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAg > 2:4702820/1‑93 (MQ=255)
ggTAATTTTTCCCATCGCG‑AAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAgc < 1:3714367/93‑1 (MQ=255)
gTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAgc > 1:6230051/1‑93 (MQ=255)
gTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAgc < 2:3067935/93‑1 (MQ=255)
gTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGATCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAgc > 1:1519855/1‑93 (MQ=255)
tAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAgcg > 1:5921437/1‑93 (MQ=255)
tAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAgcg < 1:6256539/93‑1 (MQ=255)
aaTTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGCTGCAGAAAATAAACAGCATAAAGCAAAGATTAAgcga > 1:877137/1‑92 (MQ=255)
aTTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCa > 2:3475942/1‑93 (MQ=255)
aTTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCa < 1:2404478/93‑1 (MQ=255)
ttttCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATc < 2:4274633/93‑1 (MQ=255)
tttCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCg > 1:3779418/1‑93 (MQ=255)
tttCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCg < 2:1313311/93‑1 (MQ=255)
ccATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGgtgt > 1:3082441/1‑93 (MQ=255)
ccATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGgtgt < 1:2141751/93‑1 (MQ=255)
cATCGCGACAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGtt > 2:6132134/1‑93 (MQ=255)
cATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGtt < 2:2737758/93‑1 (MQ=255)
cATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGtt < 2:66054/93‑1 (MQ=255)
aTCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTa > 1:4059992/1‑93 (MQ=255)
tCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTaa < 1:4613727/93‑1 (MQ=255)
gAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCt < 2:4252094/93‑1 (MQ=255)
aaaaaaaaTGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTg < 1:4107241/93‑1 (MQ=255)
aaaaaaaTGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGa < 1:1694882/93‑1 (MQ=255)
aaaaaTGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGaaa < 2:1696659/93‑1 (MQ=255)
aaaTGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAAtg > 2:841623/1‑93 (MQ=255)
aaaTGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAAtg > 2:1936719/1‑93 (MQ=255)
aaTGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAAtgt > 2:6146913/1‑93 (MQ=255)
|
CAGCTTACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGAAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGT > NC_000913/888704‑888884
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGAAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAA > NC_000913/888709‑888895
|
TACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGAAAAAAG < SRR4302533.3271398/94‑1 (MQ=60)
TACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGAAAAAAG < SRR4302533.5666014/94‑1 (MQ=60)
CCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCATTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTT > SRR4302533.4474208/1‑94 (MQ=60)
CCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTT < SRR4302533.3104637/94‑1 (MQ=60)
CCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTT < SRR4302533.1037509/94‑1 (MQ=60)
CCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTT > SRR4302533.3048718/1‑94 (MQ=60)
CCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTT > SRR4302533.1404327/1‑94 (MQ=60)
CTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTC < SRR4302533.2065369/94‑1 (MQ=60)
TAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCG < SRR4302533.5050151/94‑1 (MQ=60)
AACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGG > SRR4302533.1319832/1‑94 (MQ=60)
AACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGG < SRR4302533.2912730/94‑1 (MQ=60)
ACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGT < SRR4302533.470623/94‑1 (MQ=60)
CCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTC > SRR4302533.2864943/1‑94 (MQ=60)
CCCTAAGGCGATCACCAGCGCACTGCCAACCATAACCAGTGCAAAAATAAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTC > SRR4302533.3028855/1‑94 (MQ=60)
CCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCC < SRR4302533.4502814/94‑1 (MQ=60)
CTAAGGCGATCACCAGCGCACTGCCAACCATCGCCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCG < SRR4302533.3601402/94‑1 (MQ=60)
CTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCG > SRR4302533.1400662/1‑94 (MQ=60)
TAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTTGGTCCGG < SRR4302533.4985378/94‑1 (MQ=60)
TAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGG > SRR4302533.2926649/1‑94 (MQ=60)
AAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGC > SRR4302533.3715212/1‑94 (MQ=60)
AGGCGATCACCAGCGCACTGCCATCCATCACCAGTGCTATCATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCT < SRR4302533.5965894/94‑1 (MQ=60)
AGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCT > SRR4302533.3507566/1‑94 (MQ=60)
AGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCT < SRR4302533.5519000/94‑1 (MQ=60)
GCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTC > SRR4302533.673399/1‑94 (MQ=60)
CGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTTG < SRR4302533.468926/94‑1 (MQ=60)
CGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCG > SRR4302533.3447033/1‑94 (MQ=60)
CGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCG < SRR4302533.5536328/94‑1 (MQ=60)
GATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGA > SRR4302533.2089858/1‑94 (MQ=60)
ATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAC > SRR4302533.3859717/1‑94 (MQ=60)
ATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGAC > SRR4302533.296157/1‑94 (MQ=60)
CACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCC > SRR4302533.3916022/1‑94 (MQ=60)
ACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCC > SRR4302533.700564/1‑94 (MQ=60)
ACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCC < SRR4302533.3736618/94‑1 (MQ=60)
CAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGA > SRR4302533.2604155/1‑94 (MQ=60)
AGCGCACTGCCAGCCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGAC < SRR4302533.3351887/94‑1 (MQ=60)
AGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGAC < SRR4302533.4918118/94‑1 (MQ=60)
CGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGC > SRR4302533.4660753/1‑94 (MQ=60)
CACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAG > SRR4302533.177161/1‑94 (MQ=60)
CACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAG < SRR4302533.4329701/94‑1 (MQ=60)
TGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAA < SRR4302533.3243862/94‑1 (MQ=60)
GCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAA > SRR4302533.4038314/1‑94 (MQ=60)
CCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAAT > SRR4302533.4179145/1‑94 (MQ=60)
CAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATA > SRR4302533.2302159/1‑94 (MQ=60)
CAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATA > SRR4302533.2545315/1‑94 (MQ=60)
CAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATA > SRR4302533.69569/1‑94 (MQ=60)
CAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGGTCGGTCCGGCTTCGACCCCGACGCAGAAAATA > SRR4302533.2248368/1‑94 (MQ=60)
AACCATCACCAGTGCTAACATTAGGTAATTCTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAA > SRR4302533.2083268/1‑94 (MQ=60)
ACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAA < SRR4302533.703644/94‑1 (MQ=60)
TCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGC < SRR4302533.714154/94‑1 (MQ=60)
TCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGC < SRR4302533.1005862/94‑1 (MQ=60)
CACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCA > SRR4302533.3461107/1‑94 (MQ=60)
ACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCAT < SRR4302533.4911310/94‑1 (MQ=60)
ACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCAT > SRR4302533.4492975/1‑94 (MQ=60)
CCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATA < SRR4302533.611547/94‑1 (MQ=60)
AGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAA > SRR4302533.3836992/1‑94 (MQ=60)
AGCGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAA < SRR4302533.2292740/94‑1 (MQ=60)
GTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAG < SRR4302533.2344873/94‑1 (MQ=60)
GTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAG < SRR4302533.152462/94‑1 (MQ=60)
GTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAG < SRR4302533.1138301/94‑1 (MQ=60)
TGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGC < SRR4302533.2697308/94‑1 (MQ=60)
GCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCC < SRR4302533.1203421/94‑1 (MQ=60)
TAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAA > SRR4302533.5455973/1‑94 (MQ=60)
TAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAA > SRR4302533.5566821/1‑94 (MQ=60)
TAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAA < SRR4302533.5989465/94‑1 (MQ=60)
TAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAA > SRR4302533.3592477/1‑94 (MQ=60)
AGCATTAGCTAATTTTTCCCATCGCGAAAAAAAA‑GGGAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAG < SRR4302533.3796167/94‑1 (MQ=60)
AACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAG > SRR4302533.2658216/1‑94 (MQ=60)
ACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGA < SRR4302533.629006/94‑1 (MQ=60)
ACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGA < SRR4302533.482573/94‑1 (MQ=60)
CATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGAT > SRR4302533.1332276/1‑94 (MQ=60)
CATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGAT < SRR4302533.4839672/94‑1 (MQ=60)
CATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGACAAGAT > SRR4302533.5329286/1‑94 (MQ=60)
ATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATT > SRR4302533.3882265/1‑94 (MQ=60)
ATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATT > SRR4302533.1710093/1‑94 (MQ=60)
ATTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATT > SRR4302533.5670194/1‑94 (MQ=60)
TTAGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTA > SRR4302533.2451146/1‑94 (MQ=60)
AGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAG < SRR4302533.6331146/94‑1 (MQ=60)
AGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAG < SRR4302533.3362751/94‑1 (MQ=60)
AGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAG < SRR4302533.5988774/94‑1 (MQ=60)
AGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAG < SRR4302533.2755006/94‑1 (MQ=60)
AGGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAG < SRR4302533.276517/94‑1 (MQ=60)
GGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGC > SRR4302533.4896722/1‑94 (MQ=60)
GGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGC > SRR4302533.6267364/1‑94 (MQ=60)
GGTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGATCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGC > SRR4302533.1529005/1‑94 (MQ=60)
GGTAATTTTTCCCATCGCG‑AAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCG < SRR4302533.3737172/94‑1 (MQ=60)
GTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCG > SRR4302533.5957231/1‑94 (MQ=60)
GTAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCG > SRR4302533.2522386/1‑94 (MQ=60)
TAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGCTGCAGAAAATAAACAGCATAAAGCAAAGATTAAGCGA > SRR4302533.882287/1‑94 (MQ=60)
TAATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGC < SRR4302533.6293955/94‑1 (MQ=60)
AATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCA < SRR4302533.5246642/94‑1 (MQ=60)
AATTTTTCCCATCGCGAAAAAAAAAGGAAAAAAA‑TTTGGTCCAGCTTCGGCCCCGACGgaggaaattaatcgcaaacagccaaggataaaagca > SRR4302533.6245110/1‑58 (MQ=26)
ATTTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCAT < SRR4302533.2419328/94‑1 (MQ=60)
TTTTCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCG > SRR4302533.3802571/1‑94 (MQ=60)
TCCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTG < SRR4302533.2241136/94‑1 (MQ=60)
CCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGT < SRR4302533.1627105/94‑1 (MQ=60)
CCCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGT > SRR4302533.3101351/1‑94 (MQ=60)
CCCATCGCGAAAAAAAATGG‑AAAAAAGGTCGGGCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGGGT > SRR4302533.850537/1‑94 (MQ=60)
CCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTT < SRR4302533.2154949/94‑1 (MQ=60)
CCATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTT > SRR4302533.3872499/1‑94 (MQ=60)
CATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTA > SRR4302533.477644/1‑94 (MQ=60)
CATCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTA > SRR4302533.4084705/1‑94 (MQ=60)
TCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAAT < SRR4302533.1998061/94‑1 (MQ=60)
TCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAAT < SRR4302533.1913620/94‑1 (MQ=60)
TCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAAT < SRR4302533.4641675/94‑1 (MQ=60)
TCGCGAAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAAT > SRR4302533.4105060/1‑94 (MQ=60)
AAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGA < SRR4302533.235417/94‑1 (MQ=60)
AAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGA < SRR4302533.4132214/94‑1 (MQ=60)
AAAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGA > SRR4302533.5581939/1‑94 (MQ=60)
AAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAA < SRR4302533.1705149/94‑1 (MQ=60)
AAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAA > SRR4302533.733402/1‑94 (MQ=60)
AAAAAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAA < SRR4302533.210955/94‑1 (MQ=60)
AAAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATG < SRR4302533.4896955/94‑1 (MQ=60)
AAATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGT > SRR4302533.696118/1‑94 (MQ=60)
AATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTCAATGCTGAAATGTT > SRR4302533.995651/1‑94 (MQ=60)
ATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTG < SRR4302533.1466116/94‑1 (MQ=60)
ATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTG > SRR4302533.927472/1‑94 (MQ=60)
ATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTG < SRR4302533.1314615/94‑1 (MQ=60)
ATGG‑AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTG < SRR4302533.616348/94‑1 (MQ=60)
GGAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTCATGCTGAAATGTTGTT > SRR4302533.985509/1‑94 (MQ=60)
GGAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTT > SRR4302533.3051284/1‑94 (MQ=60)
GGAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCAGTGTTAATGCTGAAATGTTGTT < SRR4302533.1100453/94‑1 (MQ=60)
GAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTG > SRR4302533.1005412/1‑94 (MQ=60)
AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGG < SRR4302533.6041278/94‑1 (MQ=60)
AAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGG > SRR4302533.1581230/1‑94 (MQ=60)
AAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGC > SRR4302533.3427261/1‑94 (MQ=60)
AAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCT > SRR4302533.2494914/1‑94 (MQ=60)
AAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCT > SRR4302533.394592/1‑94 (MQ=60)
AAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCT > SRR4302533.3799430/1‑94 (MQ=60)
AAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTA < SRR4302533.3907193/94‑1 (MQ=60)
AAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTA < SRR4302533.5912402/94‑1 (MQ=60)
AGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAA < SRR4302533.1116118/94‑1 (MQ=60)
|
TACCTAACCCTAAGGCGATCACCAGCGCACTGCCAACCATCACCAGTGCTAACATTAGGTAATTTTTCCCATCGCGAAAAAAAATGGAAAAAAAGTTCGGTCCGGCTTCGACCCCGACGCAGAAAATAAACAGCATAAAGCCAAGATTAAGCGCATCGGTGTTAATGCTGAAATGTTGTTGGCCTAA > NC_000913/888709‑888895
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
