Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	932,454	A→G	Q3R (CAG→CGG)	ftsK →	cell division protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	932,454	0	A	G	100.0%	752.9 / NA	230	Q3R (CAG→CGG)	ftsK	cell division protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (103/127); total (103/127)

Only 100 of 239 total aligned reads displayed.

TACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGT  >  NC_000913/932364‑932543

tACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCggg                                                                                         <  2:330222/93‑1 (MQ=255)

tACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCggg                                                                                         >  2:5760337/1‑93 (MQ=255)

tACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCggg                                                                                         >  2:4481262/1‑93 (MQ=255)

tACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGACAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCggg                                                                                         <  2:4259683/93‑1 (MQ=255)

   aGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAAt                                                                                      >  1:741179/1‑93 (MQ=255)

   aGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAAt                                                                                      >  2:3107514/1‑93 (MQ=255)

    gCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATa                                                                                     <  1:1083319/93‑1 (MQ=255)

     cAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATAc                                                                                    <  2:5079245/93‑1 (MQ=255)

     cAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATAc                                                                                    <  1:5606395/93‑1 (MQ=255)

       aCAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACAt                                                                                  >  1:5196599/1‑93 (MQ=255)

        cAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACAtt                                                                                 >  1:5931780/1‑93 (MQ=255)

         aGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTg                                                                                <  1:1421446/93‑1 (MQ=255)

         aGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTg                                                                                <  2:2972924/93‑1 (MQ=255)

          gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGa                                                                               <  2:4327626/93‑1 (MQ=255)

           tACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGaa                                                                              <  2:5337643/93‑1 (MQ=255)

           tACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATCGaa                                                                              <  1:2876542/93‑1 (MQ=255)

             cTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGa                                                                            >  1:4028525/1‑93 (MQ=255)

             cTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGa                                                                            >  2:622450/1‑93 (MQ=255)

              tGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGAc                                                                           >  2:5128674/1‑93 (MQ=255)

                gggTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACaa                                                                         >  1:1547237/1‑93 (MQ=255)

                   tAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAaaga                                                                      <  1:4910479/93‑1 (MQ=255)

                    aaCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAaagaa                                                                     >  1:225004/1‑93 (MQ=255)

                    aaCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAaagaa                                                                     <  2:4924399/93‑1 (MQ=255)

                     aCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAaagaag                                                                    >  1:2537554/1‑93 (MQ=255)

                     aCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAaagaag                                                                    <  2:2907058/93‑1 (MQ=255)

                       cTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTc                                                                  <  1:5105720/93‑1 (MQ=255)

                        tGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTca                                                                 >  1:3494539/1‑93 (MQ=255)

                          gTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTcaca                                                               <  2:5876992/93‑1 (MQ=255)

                          gTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTcaca                                                               >  1:652312/1‑93 (MQ=255)

                          gTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTcaca                                                               >  1:3709821/1‑93 (MQ=255)

                            aCTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATATATTGAAGACAAAGAAGTCACAtt                                                             >  1:693672/1‑93 (MQ=255)

                            aCTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACAtt                                                             <  1:2502481/93‑1 (MQ=255)

                             cTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTg                                                            >  2:1190698/1‑93 (MQ=255)

                              tgttgtCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGa                                                           >  1:2473781/1‑93 (MQ=255)

                              tgttgtCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGa                                                           >  1:1675659/1‑93 (MQ=255)

                              tgtggtCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGa                                                           <  1:5958518/93‑1 (MQ=255)

                                ttgtCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACa                                                         <  2:703802/93‑1 (MQ=255)

                                  gtCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACaaa                                                       <  2:483212/93‑1 (MQ=255)

                                  gtCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACaaa                                                       >  2:5605853/1‑93 (MQ=255)

                                       ttttATCATCGGGCAGGAAAAGCCTGTAGCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTaa                                                  <  1:1788973/93‑1 (MQ=255)

                                       ttttAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTaa                                                  >  1:2862591/1‑93 (MQ=255)

                                        tttAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAg                                                 <  1:1139184/93‑1 (MQ=255)

                                         ttAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGt                                                >  1:5069911/1‑93 (MQ=255)

                                         ttAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGt                                                <  2:2583139/93‑1 (MQ=255)

                                         ttACCATCGGACAGGAAAAGCCGATAACCTGGAGAGCCTTTCTTGAGCCGGGAAGACATTGAAGACAAAGAAGTCACAATAACAAAGTTAAGt                                                <  2:3838535/93‑1 (MQ=255)

                                          tAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTa                                               <  1:3879607/93‑1 (MQ=255)

                                          tAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTa                                               <  2:1521246/93‑1 (MQ=255)

                                           aGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAg                                              >  1:774291/1‑93 (MQ=255)

                                           aGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAg                                              <  1:5704067/93‑1 (MQ=255)

                                           aGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAg                                              <  2:4354487/93‑1 (MQ=255)

                                            ccATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGc                                             <  2:2326858/92‑1 (MQ=255)

                                              aTCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCgg                                           <  1:5389466/93‑1 (MQ=255)

                                               tCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGgc                                          <  1:172363/93‑1 (MQ=255)

                                               tCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGgc                                          >  1:434377/1‑93 (MQ=255)

                                                cGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGgcc                                         <  1:1969461/93‑1 (MQ=255)

                                                  ggCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGgccgc                                       >  1:4500574/1‑93 (MQ=255)

                                                   gCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGgccgcc                                      <  1:2843421/93‑1 (MQ=255)

                                                    cAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGgccgccg                                     >  2:2369268/1‑93 (MQ=255)

                                                       gAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCt                                  <  1:4596900/93‑1 (MQ=255)

                                                          aaGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCt                               >  1:1201335/1‑93 (MQ=255)

                                                          aaGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCt                               <  1:1323120/93‑1 (MQ=255)

                                                          aaGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCt                               >  1:6275715/1‑93 (MQ=255)

                                                           aGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTg                              >  2:1386171/1‑93 (MQ=255)

                                                            gCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTgg                             >  1:3661012/1‑93 (MQ=255)

                                                             ccTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGa                            <  1:3202470/93‑1 (MQ=255)

                                                             ccTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGa                            <  2:418290/93‑1 (MQ=255)

                                                             ccTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGa                            <  2:1874517/93‑1 (MQ=255)

                                                             ccTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGa                            <  2:1273703/93‑1 (MQ=255)

                                                               tGTACCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAgg                          <  1:6136052/93‑1 (MQ=255)

                                                                  aaCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGt                       >  2:1691218/1‑93 (MQ=255)

                                                                  aaCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGt                       >  1:4772263/1‑93 (MQ=255)

                                                                  aaCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGt                       <  1:4815098/93‑1 (MQ=255)

                                                                  aaCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGt                       <  1:5477458/93‑1 (MQ=255)

                                                                    ccTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTg                     >  2:3784869/1‑93 (MQ=255)

                                                                     cTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGc                    >  1:6222680/1‑93 (MQ=255)

                                                                     cTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGc                    >  2:5410064/1‑93 (MQ=255)

                                                                     cTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGc                    <  2:6038052/93‑1 (MQ=255)

                                                                     cTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGc                    <  1:887201/93‑1 (MQ=255)

                                                                      tGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCt                   >  1:296499/1‑93 (MQ=255)

                                                                       ggAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTg                  >  1:5868966/1‑93 (MQ=255)

                                                                        gagaGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGa                 <  2:1213358/93‑1 (MQ=255)

                                                                        gagaGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGa                 <  1:1009084/93‑1 (MQ=255)

                                                                        gagaGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGa                 <  1:3164006/93‑1 (MQ=255)

                                                                        gagaGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGa                 >  2:3772079/1‑93 (MQ=255)

                                                                        gagaGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGa                 >  2:5022958/1‑93 (MQ=255)

                                                                         agagCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGAt                <  2:4021039/93‑1 (MQ=255)

                                                                          gagCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCTGCCGCCGCCTTCTGGAGGCGTTGCTGATc               >  2:2703018/1‑93 (MQ=255)

                                                                          gagCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATc               >  1:2103565/1‑93 (MQ=255)

                                                                           agCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATcc              <  1:2790364/93‑1 (MQ=255)

                                                                            gCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCt             >  2:3904635/1‑93 (MQ=255)

                                                                              cTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTa           <  1:4275657/93‑1 (MQ=255)

                                                                               tttCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTAt          <  2:5193295/93‑1 (MQ=255)

                                                                               tttCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTAt          <  2:4654702/93‑1 (MQ=255)

                                                                               tttCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTAt          >  2:5430186/1‑93 (MQ=255)

                                                                                 tCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTg        >  2:5437111/1‑93 (MQ=255)

                                                                                     gAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCt    <  2:3337572/93‑1 (MQ=255)

                                                                                     gAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCt    <  1:4375511/93‑1 (MQ=255)

                                                                                      aGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTg   >  2:5699326/1‑93 (MQ=255)

                                                                                      aGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTg   >  1:2378582/1‑93 (MQ=255)

                                                                                       gCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGt  <  2:2240585/93‑1 (MQ=255)

TACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGT  >  NC_000913/932364‑932543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTTGC  >  NC_000913/932362‑932547

CATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGG                                                                                              <  SRR4302533.1042792/94‑1 (MQ=60)

CATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGG                                                                                              <  SRR4302533.528370/94‑1 (MQ=60)

 ATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGG                                                                                             >  SRR4302533.6057237/1‑94 (MQ=60)

 ATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGG                                                                                             <  SRR4302533.3645852/94‑1 (MQ=60)

 ATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGG                                                                                             >  SRR4302533.5418967/1‑94 (MQ=60)

    CAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAAT                                                                                          <  SRR4302533.2068020/94‑1 (MQ=60)

    CAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAAT                                                                                          <  SRR4302533.712436/94‑1 (MQ=60)

    CAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAAT                                                                                          <  SRR4302533.5725487/94‑1 (MQ=60)

    CAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAAT                                                                                          >  SRR4302533.745541/1‑94 (MQ=60)

      GCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATAC                                                                                        <  SRR4302533.4871014/94‑1 (MQ=60)

      GCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATAC                                                                                        <  SRR4302533.1089709/94‑1 (MQ=60)

       CAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACA                                                                                       <  SRR4302533.5640272/94‑1 (MQ=60)

       CAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACA                                                                                       <  SRR4302533.2847450/94‑1 (MQ=60)

        AACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACAT                                                                                      >  SRR4302533.5227936/1‑94 (MQ=60)

        AACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCATTCTTGAGCCGGGAATACAT                                                                                      >  SRR4302533.4230712/1‑94 (MQ=60)

         ACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATT                                                                                     >  SRR4302533.5967641/1‑94 (MQ=60)

           AGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGA                                                                                   <  SRR4302533.1430043/94‑1 (MQ=60)

           AGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGA                                                                                   >  SRR4302533.2874914/1‑94 (MQ=60)

            GTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAA                                                                                  <  SRR4302533.4824379/94‑1 (MQ=60)

            GTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAA                                                                                  >  SRR4302533.2110065/1‑94 (MQ=60)

             TACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATCGAAG                                                                                 <  SRR4302533.2894243/94‑1 (MQ=60)

              ACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGA                                                                                <  SRR4302533.2350008/94‑1 (MQ=60)

              ACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGA                                                                                >  SRR4302533.4053046/1‑94 (MQ=60)

              ACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGA                                                                                <  SRR4302533.745695/94‑1 (MQ=60)

                TGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACA                                                                              >  SRR4302533.5981225/1‑94 (MQ=60)

                 GGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAA                                                                             >  SRR4302533.1556561/1‑94 (MQ=60)

                 GGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAA                                                                             >  SRR4302533.5152910/1‑94 (MQ=60)

                  GGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAA                                                                            <  SRR4302533.5911058/94‑1 (MQ=60)

                   GGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAG                                                                           >  SRR4302533.3216084/1‑94 (MQ=60)

                   GGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAG                                                                           <  SRR4302533.2476610/94‑1 (MQ=60)

                    GTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGA                                                                          <  SRR4302533.5113203/94‑1 (MQ=60)

                    GTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGA                                                                          >  SRR4302533.2208408/1‑94 (MQ=60)

                    GTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGA                                                                          <  SRR4302533.716645/94‑1 (MQ=60)

                     TAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAA                                                                         <  SRR4302533.4940227/94‑1 (MQ=60)

                     TAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAA                                                                         >  SRR4302533.226410/1‑94 (MQ=60)

                     TAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAA                                                                         <  SRR4302533.1712916/94‑1 (MQ=60)

                      AACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAG                                                                        <  SRR4302533.3720263/94‑1 (MQ=60)

                      AACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAG                                                                        >  SRR4302533.1525284/1‑94 (MQ=60)

                      AACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAG                                                                        >  SRR4302533.2553178/1‑94 (MQ=60)

                      AACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAG                                                                        <  SRR4302533.1116793/94‑1 (MQ=60)

                       ACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGT                                                                       <  SRR4302533.1531792/94‑1 (MQ=60)

                        CCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTC                                                                      >  SRR4302533.1626127/1‑94 (MQ=60)

                         CTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCA                                                                     <  SRR4302533.5136564/94‑1 (MQ=60)

                         CTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCA                                                                     <  SRR4302533.1147372/94‑1 (MQ=60)

                         CTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCA                                                                     >  SRR4302533.3516093/1‑94 (MQ=60)

                          TGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCAC                                                                    >  SRR4302533.5493693/1‑94 (MQ=60)

                          TGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGCGAATACATTGAAGACAAAGAAGACAC                                                                    >  SRR4302533.815639/1‑94 (MQ=60)

                           GGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACA                                                                   >  SRR4302533.656164/1‑94 (MQ=60)

                           GGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACA                                                                   <  SRR4302533.6207286/94‑1 (MQ=60)

                           GGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACA                                                                   >  SRR4302533.3732604/1‑94 (MQ=60)

                             TACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATATATTGAAGACAAAGAAGTCACATT                                                                 >  SRR4302533.697771/1‑94 (MQ=60)

                              ACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTG                                                                >  SRR4302533.1379175/1‑94 (MQ=60)

                              ACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTG                                                                >  SRR4302533.4237481/1‑94 (MQ=60)

                              ACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTG                                                                <  SRR4302533.2517915/94‑1 (MQ=60)

                              ACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTG                                                                >  SRR4302533.5178165/1‑94 (MQ=60)

                              ACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTG                                                                >  SRR4302533.2318154/1‑94 (MQ=60)

                               CTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGA                                                               >  SRR4302533.1685805/1‑94 (MQ=60)

                               CTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGA                                                               >  SRR4302533.2511190/1‑94 (MQ=60)

                               CTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGA                                                               >  SRR4302533.2489035/1‑94 (MQ=60)

                                TGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGAC                                                              <  SRR4302533.1735284/94‑1 (MQ=60)

                                TGTGGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGAC                                                              <  SRR4302533.5994559/94‑1 (MQ=60)

                                   TGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAA                                                           <  SRR4302533.4933609/94‑1 (MQ=60)

                                    GTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAG                                                          <  SRR4302533.355449/94‑1 (MQ=60)

                                      CCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTT                                                        >  SRR4302533.4700080/1‑94 (MQ=60)

                                       CGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTA                                                       >  SRR4302533.384379/1‑94 (MQ=60)

                                        GTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAA                                                      >  SRR4302533.2880201/1‑94 (MQ=60)

                                         TTTTATCATCGGGCAGGAAAAGCCTGTAGCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAG                                                     <  SRR4302533.1799853/94‑1 (MQ=60)

                                         TTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAG                                                     <  SRR4302533.792352/94‑1 (MQ=60)

                                          TTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGT                                                    >  SRR4302533.5100524/1‑94 (MQ=60)

                                          TTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGT                                                    <  SRR4302533.1145961/94‑1 (MQ=60)

                                           TTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTA                                                   <  SRR4302533.5557915/94‑1 (MQ=60)

                                           TTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTA                                                   <  SRR4302533.2826865/94‑1 (MQ=60)

                                            TAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAG                                                  >  SRR4302533.778842/1‑94 (MQ=60)

                                            TAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAG                                                  <  SRR4302533.3903280/94‑1 (MQ=60)

                                            TAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAG                                                  <  SRR4302533.1721421/94‑1 (MQ=60)

                                            TAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAG                                                  <  SRR4302533.2973150/94‑1 (MQ=60)

                                             AGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGC                                                 <  SRR4302533.5738521/94‑1 (MQ=60)

                                              GCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGTATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCG                                                >  SRR4302533.4506220/1‑94 (MQ=60)

                                              GCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCG                                                <  SRR4302533.1188011/94‑1 (MQ=60)

                                               CATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGG                                               >  SRR4302533.2884711/1‑94 (MQ=60)

                                               CATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGG                                               <  SRR4302533.2920321/94‑1 (MQ=60)

                                               CATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGG                                               >  SRR4302533.4398944/1‑94 (MQ=60)

                                                ATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGC                                              <  SRR4302533.5421853/94‑1 (MQ=60)

                                                ATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGC                                              >  SRR4302533.436966/1‑94 (MQ=60)

                                                 TCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCC                                             <  SRR4302533.173451/94‑1 (MQ=60)

                                                 TCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCC                                             >  SRR4302533.5074106/1‑94 (MQ=60)

                                                  CGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCG                                            <  SRR4302533.1981505/94‑1 (MQ=60)

                                                   GGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGC                                           >  SRR4302533.4527836/1‑94 (MQ=60)

                                                    GGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCC                                          >  SRR4302533.4566313/1‑94 (MQ=60)

                                                    GGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCC                                          <  SRR4302533.4646637/94‑1 (MQ=60)

                                                     GCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCG                                         <  SRR4302533.2860919/94‑1 (MQ=60)

                                                         GAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTT                                     <  SRR4302533.4624746/94‑1 (MQ=60)

                                                           AAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCT                                   <  SRR4302533.674802/94‑1 (MQ=60)

                                                           AAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCT                                   >  SRR4302533.6313190/1‑94 (MQ=60)

                                                           AAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCT                                   >  SRR4302533.1208552/1‑94 (MQ=60)

                                                            AAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTG                                  <  SRR4302533.4029340/94‑1 (MQ=60)

                                                            AAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTG                                  <  SRR4302533.1331057/94‑1 (MQ=60)

                                                             AGCCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGG                                 >  SRR4302533.3683522/1‑94 (MQ=60)

                                                              GCCTGTAACCTGGAGAGCCCTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGA                                >  SRR4302533.2543458/1‑94 (MQ=60)

                                                               CCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAG                               <  SRR4302533.3222179/94‑1 (MQ=60)

                                                               CCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAG                               <  SRR4302533.6102346/94‑1 (MQ=60)

                                                               CCTGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAG                               <  SRR4302533.3478817/94‑1 (MQ=60)

                                                                 TGTACCCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGC                             <  SRR4302533.6173021/94‑1 (MQ=60)

                                                                 TGTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGC                             <  SRR4302533.5882760/94‑1 (MQ=60)

                                                                  GTAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCG                            <  SRR4302533.4394695/94‑1 (MQ=60)

                                                                   TAACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGT                           >  SRR4302533.4801185/1‑94 (MQ=60)

                                                                    AACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTT                          <  SRR4302533.4844283/94‑1 (MQ=60)

                                                                    AACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTT                          <  SRR4302533.5510473/94‑1 (MQ=60)

                                                                    AACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTT                          <  SRR4302533.6270993/94‑1 (MQ=60)

                                                                    AACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTT                          <  SRR4302533.5878696/94‑1 (MQ=60)

                                                                     ACCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTG                         <  SRR4302533.2529476/94‑1 (MQ=60)

                                                                      CCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGC                        >  SRR4302533.6259974/1‑94 (MQ=60)

                                                                      CCTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGC                        <  SRR4302533.1210461/94‑1 (MQ=60)

                                                                       CTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCT                       <  SRR4302533.892409/94‑1 (MQ=60)

                                                                       CTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCT                       >  SRR4302533.298312/1‑94 (MQ=60)

                                                                       CTGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCT                       >  SRR4302533.2999445/1‑94 (MQ=60)

                                                                        TGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTG                      >  SRR4302533.3513209/1‑94 (MQ=60)

                                                                        TGGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTG                      >  SRR4302533.5904437/1‑94 (MQ=60)

                                                                         GGAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGA                     <  SRR4302533.5639727/94‑1 (MQ=60)

                                                                          GAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGAT                    <  SRR4302533.1014988/94‑1 (MQ=60)

                                                                          GAGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGAT                    <  SRR4302533.3183480/94‑1 (MQ=60)

                                                                           AGAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATC                   >  SRR4302533.2116534/1‑94 (MQ=60)

                                                                            GAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCC                  >  SRR4302533.6329062/1‑94 (MQ=60)

                                                                            GAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCC                  >  SRR4302533.1878325/1‑94 (MQ=60)

                                                                            GAGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCC                  >  SRR4302533.1082332/1‑94 (MQ=60)

                                                                             AGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCT                 <  SRR4302533.2807525/94‑1 (MQ=60)

                                                                             AGCCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCT                 >  SRR4302533.3712314/1‑94 (MQ=60)

                                                                               CCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTA               >  SRR4302533.6269580/1‑94 (MQ=60)

                                                                               CCTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTA               <  SRR4302533.4310195/94‑1 (MQ=60)

                                                                                CTTTCTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTAT              <  SRR4302533.4301376/94‑1 (MQ=60)

                                                                                    CTTGAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTC          <  SRR4302533.2704493/94‑1 (MQ=60)

                                                                                       GAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTG       >  SRR4302533.2393297/1‑94 (MQ=60)

                                                                                       GAGCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTG       <  SRR4302533.4401920/94‑1 (MQ=60)

                                                                                         GCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTT     >  SRR4302533.973010/1‑94 (MQ=60)

                                                                                         GCCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTT     >  SRR4302533.4864834/1‑94 (MQ=60)

                                                                                          CCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTT    <  SRR4302533.6107697/94‑1 (MQ=60)

                                                                                          CCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTT    <  SRR4302533.291234/94‑1 (MQ=60)

                                                                                          CCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTT    <  SRR4302533.2979205/94‑1 (MQ=60)

                                                                                          CCGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTT    >  SRR4302533.4028905/1‑94 (MQ=60)

                                                                                           CGGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTTG   >  SRR4302533.3375691/1‑94 (MQ=60)

                                                                                            GGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTTGC  >  SRR4302533.2619436/1‑94 (MQ=60)

CATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACATTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGCCGCCTTCTGGAGGCGTTGCTGATCCTTATTGTCCTGTTTGC  >  NC_000913/932362‑932547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`