Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	934,839	T→C	V798A (GTT→GCT)	ftsK →	cell division protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	934,839	0	T	C	100.0%	580.3 / NA	186	V798A (GTT→GCT)	ftsK	cell division protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (108/78); total (108/78)

Only 100 of 201 total aligned reads displayed.

CACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGTTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATG  >  NC_000913/934749‑934928

cacaCCAGCGGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTg                                                                                         <  2:2272598/93‑1 (MQ=255)

cacaACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTg                                                                                         >  1:3306266/1‑93 (MQ=255)

 ccaccaGCCGGTTGCGCCCCAGCCACAATACCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTgc                                                                                        <  1:3745439/89‑1 (MQ=18)

 acaacaGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTgc                                                                                        >  1:57827/1‑93 (MQ=255)

     caGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGcgccg                                                                                    >  2:3624523/1‑93 (MQ=255)

       gcgggTTCCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCgca                                                                                  <  2:2722860/90‑1 (MQ=255)

          ggTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCgcagca                                                                               <  1:1287601/93‑1 (MQ=255)

           gTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCgcagcag                                                                              >  1:5910643/1‑93 (MQ=255)

           gTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCgcagcag                                                                              >  2:5475741/1‑93 (MQ=255)

           gTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCgcagcag                                                                              <  1:911236/93‑1 (MQ=255)

             tGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCgcagcagca                                                                            <  1:3154818/93‑1 (MQ=255)

              gcgcCGCAGCCACAATACCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGcagcagcag                                                                           <  2:2174312/93‑1 (MQ=255)

              ccgccgcAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACACCCGGCTGCGCCGcagcagcag                                                                           <  1:1005040/92‑1 (MQ=255)

               cgccgcAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGt                                                                          <  1:5457254/93‑1 (MQ=255)

               ccccgcAGCAACAATAGCAGCAGCCGCAACAGCCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGt                                                                          <  2:1940562/91‑1 (MQ=17)

                 ccgcAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTAt                                                                        <  1:5303372/93‑1 (MQ=255)

                  cgcAGCCACAATACCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATc                                                                       <  2:1241585/93‑1 (MQ=255)

                   gcAGCCCCAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATca                                                                      <  1:3971977/93‑1 (MQ=255)

                   gcAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATca                                                                      >  1:42308/1‑93 (MQ=255)

                   ccAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATca                                                                      <  1:5036626/92‑1 (MQ=255)

                      gCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATcagca                                                                   >  1:5705751/1‑93 (MQ=255)

                      gCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATcagca                                                                   >  2:1296630/1‑93 (MQ=255)

                      gCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATcagca                                                                   >  1:1816081/1‑93 (MQ=255)

                      gCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATcagca                                                                   >  2:5174361/1‑93 (MQ=255)

                       caacaATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATcagcag                                                                  <  2:843758/91‑1 (MQ=255)

                        cacaATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCagcagc                                                                 >  2:2133851/1‑93 (MQ=255)

                        cacaATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCagcagc                                                                 >  1:1071179/1‑93 (MQ=255)

                         acaATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGcc                                                                >  2:3232231/1‑93 (MQ=255)

                            atatCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCcaca                                                             >  2:4295436/1‑93 (MQ=255)

                             tatCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCacaa                                                            >  2:779115/1‑93 (MQ=255)

                             taccagcagCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCacaa                                                            <  1:233270/90‑1 (MQ=255)

                               tCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCacaaca                                                          >  1:2690085/1‑93 (MQ=255)

                               tCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCacaaca                                                          >  2:2753185/1‑93 (MQ=255)

                               tCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCacaaca                                                          >  1:4906965/1‑93 (MQ=255)

                               tCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCacaaca                                                          >  1:2904769/1‑93 (MQ=255)

                                 agcagcCGCAACAACCGGTTGCGCCACAGCAGCAATAT‑AGCAGGCGCAACAAACGGCTGCGCCGCAGCAGCCGTATCAGCCGGCCCAAAAGcc                                                       >  2:2523592/1‑93 (MQ=17)

                                  gcaccCCCAACAACCGGTGGCACCACAGCAGCAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGcc                                                       <  1:1612755/93‑1 (MQ=14)

                                     gcCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGt                                                    >  1:3271752/1‑93 (MQ=255)

                                     gcCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGt                                                    >  2:402032/1‑93 (MQ=255)

                                      ccGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGtt                                                   >  1:4377534/1‑93 (MQ=255)

                                      ccGCAACAACCGCTTGCGCTACAGCAGCAATATCAGCAGAGGCACGCACCGGCTGCGCGGCAGCAGCAGTATCAGCAGCCACAACAGCCAGtt                                                   <  2:2926499/93‑1 (MQ=17)

                                        gCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTgc                                                 <  2:144815/93‑1 (MQ=255)

                                         caacaaCCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTgcg                                                <  1:2023362/93‑1 (MQ=255)

                                          accaacCGGTTGCCCCACAGCAGCAATATCAGCAGCCGCAACAACGGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTgcgc                                               <  2:1832888/91‑1 (MQ=17)

                                          aacaccCGGTTGCGCCACAGCAGCAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTgcgc                                               <  2:3414898/93‑1 (MQ=255)

                                              acCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCcaca                                           >  2:610984/1‑93 (MQ=255)

                                                cGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAAc                                         >  1:1936420/1‑93 (MQ=255)

                                                    tccgccgcAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCa                                     <  2:4564217/91‑1 (MQ=255)

                                                    tGCGCCACAGCAGCAATATCACCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCa                                     <  2:5831534/93‑1 (MQ=255)

                                                    tGCGCCACAGCAGAAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCa                                     <  2:2185172/93‑1 (MQ=255)

                                                    tGCGCCACAGAAGCAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCa                                     <  2:1979893/93‑1 (MQ=255)

                                                     gcgcCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAg                                    <  1:2961697/93‑1 (MQ=255)

                                                       gcCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGa                                  >  2:4396636/1‑93 (MQ=255)

                                                       gcCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGa                                  >  1:741827/1‑93 (MQ=255)

                                                       gcCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAAACGCAGGa                                  >  2:3334641/1‑93 (MQ=255)

                                                       ccctcagcagCAAAATCAGCAGCCGCAACAATCGGCTGCGCCGCAGCAGCATTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGa                                  <  2:1748009/89‑1 (MQ=18)

                                                        ccACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAgggt                                 >  2:4860952/1‑91 (MQ=255)

                                                        ccACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGAt                                 >  2:4906159/1‑93 (MQ=255)

                                                        ccACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGAt                                 >  1:4115237/1‑93 (MQ=255)

                                                        ccACAGCAGAAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGAt                                 <  2:2684790/93‑1 (MQ=255)

                                                         cacaGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATa                                >  1:2667240/1‑93 (MQ=255)

                                                          acaGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAc                               >  2:6027952/1‑93 (MQ=255)

                                                          acaGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAc                               >  1:540661/1‑93 (MQ=255)

                                                           cagcagCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAcc                              >  2:2171695/1‑93 (MQ=255)

                                                            agcagcAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAccc                             <  2:4651701/93‑1 (MQ=255)

                                                            agcagcAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAccc                             <  2:2441303/93‑1 (MQ=255)

                                                             gcagcaATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCt                            <  2:5709905/93‑1 (MQ=255)

                                                             gcagcaATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCt                            <  2:4121008/93‑1 (MQ=255)

                                                              cagcaATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTg                           >  2:63035/1‑93 (MQ=255)

                                                              cagcaATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTg                           >  2:877789/1‑93 (MQ=255)

                                                              cagcaATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTg                           <  2:1199421/93‑1 (MQ=255)

                                                               agcaATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGc                          >  1:897435/1‑93 (MQ=255)

                                                                  aaTATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTc                       >  2:2529714/1‑93 (MQ=255)

                                                                  aaTATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTc                       >  1:2246812/1‑93 (MQ=255)

                                                                    tatCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCAt                     >  1:4883351/1‑93 (MQ=255)

                                                                     atCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATc                    >  2:1375861/1‑93 (MQ=255)

                                                                     atCAGCAGCCGCAACAACCGCCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATc                    <  1:2061892/93‑1 (MQ=255)

                                                                      acagcagCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATcc                   <  2:5626566/92‑1 (MQ=255)

                                                                        cgcagcCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGc                 <  1:957386/92‑1 (MQ=255)

                                                                        agcagcCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGc                 >  1:485140/1‑93 (MQ=255)

                                                                           agcCGCAACACCCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGt              <  2:3677391/93‑1 (MQ=255)

                                                                           acccGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGt              <  1:617548/91‑1 (MQ=255)

                                                                             ccGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTg            >  1:1848168/1‑93 (MQ=255)

                                                                              cGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGa           <  2:2975909/93‑1 (MQ=255)

                                                                              cGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGa           <  1:305890/93‑1 (MQ=255)

                                                                               gCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGAt          <  2:2904769/93‑1 (MQ=255)

                                                                                caacaaCCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATg         <  1:3502509/93‑1 (MQ=255)

                                                                                 aacaacCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGc        >  1:757831/1‑93 (MQ=255)

                                                                                  acaacCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCg       >  2:3931081/1‑93 (MQ=255)

                                                                                   caacCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGt      >  1:4681067/1‑93 (MQ=255)

                                                                                   caacAGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGt      >  2:6296192/1‑93 (MQ=255)

                                                                                    acccGGCTCCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTa     <  1:4777762/91‑1 (MQ=255)

                                                                                    aacCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTa     >  2:1558841/1‑93 (MQ=255)

                                                                                    aacCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTa     <  2:2012339/93‑1 (MQ=255)

                                                                                     acCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTaa    >  1:11148/1‑93 (MQ=255)

                                                                                     acCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTaa    >  1:4538125/1‑93 (MQ=255)

                                                                                      ccGGGTGCTCCGAAGCAGCAGTACGGGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCGTGCTTCATCCGCTGTTGATGCGTAAt   <  2:1163542/93‑1 (MQ=255)

                                                                                      ccGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAAt   >  1:6245607/1‑93 (MQ=255)

                                                                                      ccGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAAt   <  1:161955/93‑1 (MQ=255)

                                                                                       cGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATg  <  1:2266811/93‑1 (MQ=255)

CACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGTTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATG  >  NC_000913/934749‑934928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCCACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGTTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGCGA  >  NC_000913/934746‑934932

AGCCACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGC                                                                                               >  SRR4302533.5495819/1‑94 (MQ=60)

 GCCACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCT                                                                                              >  SRR4302533.5839003/1‑94 (MQ=60)

  CCACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTG                                                                                             >  SRR4302533.3326681/1‑94 (MQ=60)

  CCACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTG                                                                                             >  SRR4302533.611295/1‑94 (MQ=60)

  CCAC‑‑CAGCCGGTTGCGCCCCAGCCACAATACCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCG                                                                                           <  SRR4302533.3768407/94‑1 (MQ=60)

   CACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGC                                                                                            >  SRR4302533.58209/1‑94 (MQ=60)

   CACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGC                                                                                            >  SRR4302533.1099891/1‑94 (MQ=60)

   CACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGC                                                                                            >  SRR4302533.4740059/1‑94 (MQ=60)

      AGCAGCCGGTGGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCC                                                                                         <  SRR4302533.2295596/94‑1 (MQ=60)

            CGGTTGCCCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCA                                                                                   <  SRR4302533.4117857/94‑1 (MQ=60)

             cgtcacgcccCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAG                                                                                  <  SRR4302533.1275826/84‑1 (MQ=60)

             GGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAG                                                                                  <  SRR4302533.1295347/94‑1 (MQ=60)

             GGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAG                                                                                  >  SRR4302533.5946352/1‑94 (MQ=60)

              gtgggacccCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGC                                                                                 <  SRR4302533.4873571/85‑1 (MQ=60)

              GTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGC                                                                                 <  SRR4302533.916579/94‑1 (MQ=60)

               TTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCA                                                                                <  SRR4302533.3847754/94‑1 (MQ=60)

                TGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAG                                                                               <  SRR4302533.3174211/94‑1 (MQ=60)

                 CCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACACCCGGCTGCGCCGCAGCAGCAGT                                                                              <  SRR4302533.1010918/94‑1 (MQ=60)

                  CGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTA                                                                             <  SRR4302533.5490132/94‑1 (MQ=60)

                  CGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTA                                                                             <  SRR4302533.909169/94‑1 (MQ=60)

                   GCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTAT                                                                            >  SRR4302533.2978176/1‑94 (MQ=60)

                    CCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATC                                                                           <  SRR4302533.5335144/94‑1 (MQ=60)

                     CGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCA                                                                          >  SRR4302533.42596/1‑94 (MQ=60)

                      GCAGCCCCAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAG                                                                         <  SRR4302533.3996167/94‑1 (MQ=60)

                      GCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAG                                                                         >  SRR4302533.3095585/1‑94 (MQ=60)

                      CCAGCCCCAATACCAGCACCCGCAACATCCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAG                                                                         <  SRR4302533.1863958/94‑1 (MQ=56)

                      CCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAG                                                                         <  SRR4302533.5067128/94‑1 (MQ=60)

                        AGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCA                                                                       >  SRR4302533.1827167/1‑94 (MQ=60)

                        AGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCA                                                                       >  SRR4302533.3319740/1‑94 (MQ=60)

                        AGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCA                                                                       >  SRR4302533.5740214/1‑94 (MQ=60)

                         GCCACAATATGAGCAGCCGCAACAACCGGTTCCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAG                                                                      <  SRR4302533.2047525/94‑1 (MQ=60)

                          CCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGC                                                                     >  SRR4302533.185332/1‑94 (MQ=60)

                          CCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGC                                                                     >  SRR4302533.1077489/1‑94 (MQ=60)

                           CACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCC                                                                    >  SRR4302533.801960/1‑94 (MQ=60)

                           CACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCC                                                                    >  SRR4302533.5028637/1‑94 (MQ=60)

                               ATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAA                                                                >  SRR4302533.4669124/1‑94 (MQ=60)

                                TACCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAAC                                                               <  SRR4302533.234711/94‑1 (MQ=60)

                                 ATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACA                                                              >  SRR4302533.4936694/1‑94 (MQ=60)

                                 ATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACA                                                              >  SRR4302533.5085650/1‑94 (MQ=60)

                                 ATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACA                                                              >  SRR4302533.2922611/1‑94 (MQ=60)

                                 ATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACA                                                              >  SRR4302533.2706576/1‑94 (MQ=60)

                                   CAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGC                                                            <  SRR4302533.1703624/94‑1 (MQ=60)

                                     GCACCCCCAACAACCGGTGGCACCACAGCAGCAATACCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCA                                                          <  SRR4302533.1622531/94‑1 (MQ=33)

                                       AGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGT                                                        >  SRR4302533.3291942/1‑94 (MQ=60)

                                        GCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTT                                                       >  SRR4302533.4403962/1‑94 (MQ=60)

                                          CGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGC                                                     <  SRR4302533.1247032/94‑1 (MQ=60)

                                            CAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGC                                                   <  SRR4302533.2035857/94‑1 (MQ=60)

                                               CAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCAC                                                <  SRR4302533.758139/94‑1 (MQ=60)

                                                 ACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAA                                              >  SRR4302533.4821192/1‑94 (MQ=60)

                                                  CCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAAC                                             >  SRR4302533.4290057/1‑94 (MQ=60)

                                                  CCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAAC                                             >  SRR4302533.1948230/1‑94 (MQ=60)

                                                  CCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAAC                                             >  SRR4302533.3291228/1‑94 (MQ=60)

                                                  CCAGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCcaaac                                             >  SRR4302533.1730953/1‑89 (MQ=60)

                                                   CGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACC                                            <  SRR4302533.957458/94‑1 (MQ=60)

                                                    GGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCG                                           >  SRR4302533.544641/1‑94 (MQ=60)

                                                        GCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGG                                       <  SRR4302533.2979800/94‑1 (MQ=60)

                                                         CGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGA                                      >  SRR4302533.746195/1‑94 (MQ=60)

                                                          GCCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGAT                                     >  SRR4302533.4140242/1‑94 (MQ=60)

                                                           CCACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATA                                    >  SRR4302533.2683605/1‑94 (MQ=60)

                                                            CACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAC                                   >  SRR4302533.2147480/1‑94 (MQ=60)

                                                            CACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAC                                   >  SRR4302533.1623370/1‑94 (MQ=60)

                                                            CACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATAC                                   >  SRR4302533.543881/1‑94 (MQ=60)

                                                             ACAGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACC                                  >  SRR4302533.5374207/1‑94 (MQ=60)

                                                               AGCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCT                                <  SRR4302533.264532/94‑1 (MQ=60)

                                                                GCAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTG                               <  SRR4302533.4904236/94‑1 (MQ=60)

                                                                GCAGAAATATCAGCAGCCGCAACACCCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTG                               <  SRR4302533.446804/94‑1 (MQ=60)

                                                                 CAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGC                              >  SRR4302533.902703/1‑94 (MQ=60)

                                                                 CAGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGC                              <  SRR4302533.4214641/94‑1 (MQ=60)

                                                                  AGCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCT                             >  SRR4302533.2271856/1‑94 (MQ=60)

                                                                   GCAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTT                            <  SRR4302533.702383/94‑1 (MQ=60)

                                                                    CAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTC                           >  SRR4302533.2260696/1‑94 (MQ=60)

                                                                    CAATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTC                           >  SRR4302533.560212/1‑94 (MQ=60)

                                                                      ATATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCAT                         >  SRR4302533.4912935/1‑94 (MQ=60)

                                                                       TATCAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATC                        >  SRR4302533.3541640/1‑94 (MQ=60)

                                                                        aaaaccacCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCC                       <  SRR4302533.3617662/86‑1 (MQ=60)

                                                                        ATCAGCAGCCGCAACAACCGCCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCC                       <  SRR4302533.2074609/94‑1 (MQ=60)

                                                                          CAGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGC                     >  SRR4302533.488039/1‑94 (MQ=60)

                                                                           CGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCT                    <  SRR4302533.963015/94‑1 (MQ=60)

                                                                           AGCAGCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCT                    >  SRR4302533.3490773/1‑94 (MQ=60)

                                                                              ACCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTT                 <  SRR4302533.621168/94‑1 (MQ=60)

                                                                               GCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTG                >  SRR4302533.1859440/1‑94 (MQ=60)

                                                                               GCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTG                <  SRR4302533.5929152/94‑1 (MQ=60)

                                                                               GCCGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTG                <  SRR4302533.3009651/94‑1 (MQ=60)

                                                                                 CGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGAT              <  SRR4302533.6265838/94‑1 (MQ=60)

                                                                                 CGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGAT              >  SRR4302533.2689744/1‑94 (MQ=60)

                                                                                 CGCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGAT              <  SRR4302533.307759/94‑1 (MQ=60)

                                                                                  GCAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATG             <  SRR4302533.2029655/94‑1 (MQ=60)

                                                                                  GCAACAACCGGCGGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATG             <  SRR4302533.1483803/94‑1 (MQ=60)

                                                                                   CAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGC            <  SRR4302533.3524105/94‑1 (MQ=60)

                                                                                   CAACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGC            >  SRR4302533.762292/1‑94 (MQ=60)

                                                                                    AACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCG           >  SRR4302533.289172/1‑94 (MQ=60)

                                                                                    AACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCG           >  SRR4302533.4926020/1‑94 (MQ=60)

                                                                                     ACAACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGT          >  SRR4302533.4709431/1‑94 (MQ=60)

                                                                                       AACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAA        >  SRR4302533.11239/1‑94 (MQ=60)

                                                                                       AACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAA        >  SRR4302533.4565602/1‑94 (MQ=60)

                                                                                        ACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAAT       <  SRR4302533.1058790/94‑1 (MQ=60)

                                                                                        ACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAAT       >  SRR4302533.6282987/1‑94 (MQ=60)

                                                                                        ACCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAAT       >  SRR4302533.5760388/1‑94 (MQ=60)

                                                                                         CCGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATG      <  SRR4302533.162988/94‑1 (MQ=60)

                                                                                          CGGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGG     <  SRR4302533.2280833/94‑1 (MQ=60)

                                                                                           GGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGC    <  SRR4302533.21359/94‑1 (MQ=60)

                                                                                           GGCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGC    <  SRR4302533.4387474/94‑1 (MQ=60)

                                                                                            GCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGCG   <  SRR4302533.6048450/94‑1 (MQ=60)

                                                                                            GCTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGCG   <  SRR4302533.157219/94‑1 (MQ=60)

                                                                                             CTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGCGA  >  SRR4302533.2482259/1‑94 (MQ=60)

                                                                                             CTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGCGA  <  SRR4302533.3893222/94‑1 (MQ=60)

AGCCACAACAGCCGGTTGCGCCGCAGCCACAATATCAGCAGCCGCAACAACCGGTTGCGCCACAGCAGCAATATCAGCAGCCGCAACAACCGGTTGCGCCGCAGCAGCAGTATCAGCAGCCACAACAGCCAGTTGCGCCACAACCGCAGGATACCCTGCTTCATCCGCTGTTGATGCGTAATGGCGA  >  NC_000913/934746‑934932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`