Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	955,310	A→G	G182G (GGT→GGC)	ycaO ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	955,310	0	A	G	100.0%	741.0 / NA	228	G182G (GGT→GGC)	ycaO	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/135); total (93/135)

Only 100 of 236 total aligned reads displayed.

TTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATACCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAAT  >  NC_000913/955220‑955399

 tCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCg                                                                                        >  1:5829243/1‑93 (MQ=255)

  cAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGt                                                                                       <  1:3701593/93‑1 (MQ=255)

   aGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGACCGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGtt                                                                                      <  2:5397700/93‑1 (MQ=255)

     cAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTgg                                                                                    <  2:660928/93‑1 (MQ=255)

      aatgatGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGGATTACCTGCGGACATGCCGTTggg                                                                                   >  2:166511/1‑92 (MQ=255)

       ataatGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGgag                                                                                  >  1:5382294/1‑93 (MQ=255)

        taatGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGgaga                                                                                 >  2:6082844/1‑93 (MQ=255)

        taatGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGgaga                                                                                 >  1:2272574/1‑93 (MQ=255)

        taatGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGgaga                                                                                 <  1:437841/93‑1 (MQ=255)

         aatGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGAc                                                                                <  2:3599832/93‑1 (MQ=255)

          atGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACg                                                                               <  1:5633556/93‑1 (MQ=255)

            gCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTa                                                                             <  1:1023270/93‑1 (MQ=255)

            gCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTa                                                                             <  2:5357754/93‑1 (MQ=255)

            gCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTa                                                                             <  1:792197/93‑1 (MQ=255)

             cGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTAc                                                                            <  1:5165940/93‑1 (MQ=255)

               gTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAg                                                                          >  2:5872180/1‑93 (MQ=255)

                tttttCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAgg                                                                         <  1:3125014/93‑1 (MQ=255)

                  tttCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGtt                                                                       <  2:894399/93‑1 (MQ=255)

                    tCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTAc                                                                     >  2:5612488/1‑93 (MQ=255)

                      aCGTAGCGTTCGAAAACTTCAGACAATCGCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGGACAGCTTACCa                                                                   >  1:3796477/1‑93 (MQ=255)

                      aCGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCa                                                                   >  1:1678052/1‑93 (MQ=255)

                      aCGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCa                                                                   <  2:4339060/93‑1 (MQ=255)

                      aCGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTACGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCa                                                                   >  1:3376508/1‑93 (MQ=255)

                       cGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCaa                                                                  <  2:4021211/93‑1 (MQ=255)

                         tAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTTCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGGCGTAAAGGGTACCAATg                                                                >  2:3109604/1‑93 (MQ=255)

                          aGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGa                                                               <  2:1884402/93‑1 (MQ=255)

                           gCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGat                                                              <  1:2451937/93‑1 (MQ=255)

                           gCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGat                                                              >  1:4009727/1‑93 (MQ=255)

                           gCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGat                                                              >  2:5498948/1‑93 (MQ=255)

                            cGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGata                                                             <  2:2285430/93‑1 (MQ=255)

                              ttCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATAtt                                                           <  1:3148133/93‑1 (MQ=255)

                               tCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTc                                                          >  1:332692/1‑93 (MQ=255)

                               tCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTc                                                          <  1:6146667/93‑1 (MQ=255)

                                cGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCa                                                         >  1:4032871/1‑93 (MQ=255)

                                cGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCa                                                         <  2:4741874/93‑1 (MQ=255)

                                   aaaCTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCg                                                      <  1:1385312/93‑1 (MQ=255)

                                   aaaCTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCg                                                      <  1:446633/93‑1 (MQ=255)

                                   aaaCTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCg                                                      <  1:5130375/93‑1 (MQ=255)

                                    aaCTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCgg                                                     >  1:4589382/1‑93 (MQ=255)

                                      cTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGaa                                                   <  1:2318206/93‑1 (MQ=255)

                                         cAGACAATCCCTGAGCGCGTGCTTCGTTGCGTGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAatat                                                <  2:5833312/93‑1 (MQ=255)

                                         cAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAatat                                                <  1:3536070/93‑1 (MQ=255)

                                          aGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAtata                                               <  1:4911308/93‑1 (MQ=255)

                                          aGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAtata                                               >  2:5945768/1‑93 (MQ=255)

                                           gACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATaa                                              <  1:2232186/93‑1 (MQ=255)

                                           gACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATaa                                              >  2:4911042/1‑93 (MQ=255)

                                             cAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAAc                                            >  2:497514/1‑93 (MQ=255)

                                             cAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAAc                                            <  1:953485/93‑1 (MQ=255)

                                              aaTCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACg                                           <  2:500951/93‑1 (MQ=255)

                                              aaTCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACg                                           <  1:191486/93‑1 (MQ=255)

                                                 cccTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTc                                        >  1:6266549/1‑93 (MQ=255)

                                                 cccTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTc                                        <  2:114132/93‑1 (MQ=255)

                                                  cgtGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCt                                       <  2:2602363/91‑1 (MQ=255)

                                                   cTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTg                                      >  1:1218785/1‑93 (MQ=255)

                                                       aCGCGTTCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTg                                  <  1:409859/93‑1 (MQ=255)

                                                       aCGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTg                                  <  1:5275543/93‑1 (MQ=255)

                                                       aCGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTg                                  <  2:5740418/93‑1 (MQ=255)

                                                        cgcgTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGt                                 <  2:6062194/93‑1 (MQ=255)

                                                        cgcgTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGt                                 <  2:3607378/93‑1 (MQ=255)

                                                        cgcgTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGt                                 <  2:3149120/93‑1 (MQ=255)

                                                        cgcgTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGt                                 <  1:5043802/93‑1 (MQ=255)

                                                          cgTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATAT‑AACGGTCTTATTGTTgg                              >  2:2559133/1‑93 (MQ=255)

                                                             gCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAc                            >  1:2580740/1‑93 (MQ=255)

                                                             gCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAc                            <  1:4209899/93‑1 (MQ=255)

                                                             gCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAc                            >  2:342475/1‑93 (MQ=255)

                                                             gCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAc                            <  1:3045480/93‑1 (MQ=255)

                                                             gCTTCGTTGCGGGTATTACCTGCGGACATGCCGCTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAc                            <  2:3834411/93‑1 (MQ=255)

                                                              cTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACt                           <  2:6300778/93‑1 (MQ=255)

                                                               ttCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTg                          <  2:2168827/93‑1 (MQ=255)

                                                                tCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGa                         <  1:2686747/93‑1 (MQ=255)

                                                                   ttGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgc                      >  2:5191501/1‑93 (MQ=255)

                                                                   ttGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgc                      >  2:111408/1‑93 (MQ=255)

                                                                   ttGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAACGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgc                      >  2:6213392/1‑93 (MQ=255)

                                                                   gtGCGGGTATTACCTGCGGACATGCCGTTAGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgc                      <  2:755097/92‑1 (MQ=255)

                                                                    tGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgcg                     >  2:3925088/1‑93 (MQ=255)

                                                                    tGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgcg                     >  1:866777/1‑93 (MQ=255)

                                                                    tGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAcgcg                     <  2:2822771/93‑1 (MQ=255)

                                                                      cGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGTTCTGATTGTCGGACTGACGCGTa                   >  2:3138989/1‑93 (MQ=255)

                                                                      cGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTa                   <  2:457608/93‑1 (MQ=255)

                                                                        ggTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTaaa                 <  1:5780463/93‑1 (MQ=255)

                                                                        ggTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTaaa                 >  1:2805771/1‑93 (MQ=255)

                                                                        ggTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTaaa                 <  1:591314/93‑1 (MQ=255)

                                                                        ggTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTaaa                 <  2:5290553/93‑1 (MQ=255)

                                                                         gTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAAc                <  1:4711702/93‑1 (MQ=255)

                                                                         gTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAAc                <  1:3488257/93‑1 (MQ=255)

                                                                          tATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACg               <  1:4273328/93‑1 (MQ=255)

                                                                            ttACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGc             <  1:1853973/93‑1 (MQ=255)

                                                                            ttACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGc             <  1:5678933/93‑1 (MQ=255)

                                                                            ttACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGc             >  2:1374701/1‑93 (MQ=255)

                                                                                cTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGc         <  2:1966462/93‑1 (MQ=255)

                                                                                cTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGc         >  2:1465302/1‑93 (MQ=255)

                                                                                cTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAAGCGTAAACGGCAGGc         >  1:393513/1‑93 (MQ=255)

                                                                                 tGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGTTCTGATTGTCGGACTGACGCGTAAACGGCAGGcc        <  1:3654202/93‑1 (MQ=255)

                                                                                 tGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGcc        >  1:2400542/1‑93 (MQ=255)

                                                                                 tGCGGACAGCCCGTGGGAGACGTACAGGTTCCCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGCCTGACGCGTAAACGGCAGccc        <  2:1267726/93‑1 (MQ=255)

                                                                                   cGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGc      >  2:4190218/1‑93 (MQ=255)

                                                                                   cGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGc      <  2:2463738/93‑1 (MQ=255)

                                                                                     gACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCaa    >  1:3247938/1‑93 (MQ=255)

                                                                                      aCATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCaaa   <  2:2672275/93‑1 (MQ=255)

                                                                                       cATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAAt  >  2:2928915/1‑93 (MQ=255)

TTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATACCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAAT  >  NC_000913/955220‑955399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATACCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAATACCA  >  NC_000913/955218‑955403

CTTTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGC                                                                                              <  SRR4302533.5201921/94‑1 (MQ=60)

 TTTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCC                                                                                             <  SRR4302533.390386/94‑1 (MQ=60)

  TTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCG                                                                                            >  SRR4302533.5864469/1‑94 (MQ=60)

    CAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTT                                                                                          <  SRR4302533.3724324/94‑1 (MQ=60)

    CAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTT                                                                                          >  SRR4302533.5697477/1‑94 (MQ=60)

     AGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTG                                                                                         <  SRR4302533.3705886/94‑1 (MQ=60)

     AGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTG                                                                                         <  SRR4302533.3761074/94‑1 (MQ=60)

       CAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGA                                                                                       >  SRR4302533.3944881/1‑94 (MQ=60)

        AATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAG                                                                                      <  SRR4302533.5750767/94‑1 (MQ=60)

        AATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAG                                                                                      >  SRR4302533.5414631/1‑94 (MQ=60)

        AATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAG                                                                                      >  SRR4302533.4792043/1‑94 (MQ=60)

         ATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGA                                                                                     >  SRR4302533.2286639/1‑94 (MQ=60)

          TAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGAC                                                                                    <  SRR4302533.440449/94‑1 (MQ=60)

            ATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGT                                                                                  <  SRR4302533.2966184/94‑1 (MQ=60)

            ATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGT                                                                                  <  SRR4302533.5667624/94‑1 (MQ=60)

              GCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTAC                                                                                <  SRR4302533.4385819/94‑1 (MQ=60)

              GCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTAC                                                                                <  SRR4302533.2314190/94‑1 (MQ=60)

              GCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTAC                                                                                <  SRR4302533.796858/94‑1 (MQ=60)

              GCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTAC                                                                                <  SRR4302533.1029283/94‑1 (MQ=60)

               CGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACA                                                                               <  SRR4302533.5197134/94‑1 (MQ=60)

               CGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACA                                                                               <  SRR4302533.3879893/94‑1 (MQ=60)

                 GTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGG                                                                             >  SRR4302533.989612/1‑94 (MQ=60)

                  TTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGT                                                                            <  SRR4302533.3144222/94‑1 (MQ=60)

                   TTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTT                                                                           <  SRR4302533.1621318/94‑1 (MQ=60)

                       CACGTAGCGTTCGAAAACTTCAGACAATCGCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGGACAGCTTACCA                                                                       >  SRR4302533.3819715/1‑94 (MQ=60)

                       CACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCA                                                                       >  SRR4302533.1688216/1‑94 (MQ=60)

                       CACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCA                                                                       >  SRR4302533.2622958/1‑94 (MQ=60)

                       CACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTACGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCA                                                                       >  SRR4302533.3397358/1‑94 (MQ=60)

                         CGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAAT                                                                     <  SRR4302533.1192514/94‑1 (MQ=60)

                         CGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAAT                                                                     <  SRR4302533.2433872/94‑1 (MQ=60)

                           TAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGA                                                                   <  SRR4302533.1873289/94‑1 (MQ=60)

                           TAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGA                                                                   <  SRR4302533.5209961/94‑1 (MQ=60)

                           TAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGA                                                                   >  SRR4302533.2628351/1‑94 (MQ=60)

                            AGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGAT                                                                  >  SRR4302533.4034138/1‑94 (MQ=60)

                             GCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATA                                                                 <  SRR4302533.2467071/94‑1 (MQ=60)

                              CGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATAT                                                                <  SRR4302533.947097/94‑1 (MQ=60)

                              CGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATAT                                                                >  SRR4302533.6174340/1‑94 (MQ=60)

                                TTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTC                                                              >  SRR4302533.4656441/1‑94 (MQ=60)

                                TTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTC                                                              >  SRR4302533.334728/1‑94 (MQ=60)

                                TTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTC                                                              <  SRR4302533.3167487/94‑1 (MQ=60)

                                 TCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCA                                                             <  SRR4302533.6183672/94‑1 (MQ=60)

                                 TCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCA                                                             >  SRR4302533.4057421/1‑94 (MQ=60)

                                  CGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCAT                                                            >  SRR4302533.714093/1‑94 (MQ=60)

                                   GAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATC                                                           >  SRR4302533.2029406/1‑94 (MQ=60)

                                    AAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCG                                                          <  SRR4302533.159847/94‑1 (MQ=60)

                                    AAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCG                                                          >  SRR4302533.4042036/1‑94 (MQ=60)

                                     AAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGG                                                         <  SRR4302533.4384717/94‑1 (MQ=60)

                                     AAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGG                                                         <  SRR4302533.5161366/94‑1 (MQ=60)

                                     AAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGG                                                         <  SRR4302533.1393648/94‑1 (MQ=60)

                                     AAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGG                                                         >  SRR4302533.4617180/1‑94 (MQ=60)

                                     AAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGG                                                         <  SRR4302533.449307/94‑1 (MQ=60)

                                       ACTTCAGACGATCCCGGAACGCGTGCTTCGTTGCGGGTATTACCTGGGAACATGCCGTTGGAGACGCACGGGTTACCAATGATATTCATCGGAA                                                       <  SRR4302533.5079096/94‑1 (MQ=60)

                                        CTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAT                                                      >  SRR4302533.902324/1‑94 (MQ=60)

                                        CTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAT                                                      <  SRR4302533.4148253/94‑1 (MQ=60)

                                        CTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAT                                                      <  SRR4302533.2332557/94‑1 (MQ=60)

                                        CTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAT                                                      >  SRR4302533.3701444/1‑94 (MQ=60)

                                        CTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAAT                                                      <  SRR4302533.3287427/94‑1 (MQ=60)

                                         TTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATA                                                     <  SRR4302533.3987339/94‑1 (MQ=60)

                                           CAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTGCCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATA                                                   <  SRR4302533.4992687/94‑1 (MQ=60)

                                           CAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATA                                                   <  SRR4302533.2395103/94‑1 (MQ=60)

                                           CAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATA                                                   <  SRR4302533.3557863/94‑1 (MQ=60)

                                            AGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAA                                                  <  SRR4302533.4941061/94‑1 (MQ=60)

                                            AGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAA                                                  <  SRR4302533.5667065/94‑1 (MQ=60)

                                             GACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAA                                                 <  SRR4302533.2245960/94‑1 (MQ=60)

                                             GACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAA                                                 <  SRR4302533.5412050/94‑1 (MQ=60)

                                             GACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAA                                                 <  SRR4302533.3641524/94‑1 (MQ=60)

                                               CAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACG                                               <  SRR4302533.5169425/94‑1 (MQ=60)

                                               CAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACG                                               <  SRR4302533.959086/94‑1 (MQ=60)

                                               CAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACG                                               <  SRR4302533.3266572/94‑1 (MQ=60)

                                                AATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGG                                              <  SRR4302533.192689/94‑1 (MQ=60)

                                                 ATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGT                                             >  SRR4302533.4075654/1‑94 (MQ=60)

                                                  TCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTC                                            >  SRR4302533.6303993/1‑94 (MQ=60)

                                                   CCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCT                                           <  SRR4302533.2408816/94‑1 (MQ=60)

                                                    CCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTG                                          >  SRR4302533.1226103/1‑94 (MQ=60)

                                                     CTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGA                                         >  SRR4302533.5864670/1‑94 (MQ=60)

                                                      TGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGAT                                        >  SRR4302533.3167319/1‑94 (MQ=60)

                                                         ACGCGTTCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGT                                     <  SRR4302533.412317/94‑1 (MQ=60)

                                                         ACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGT                                     <  SRR4302533.5307173/94‑1 (MQ=60)

                                                         ACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGT                                     >  SRR4302533.5928758/1‑94 (MQ=60)

                                                          CGCGTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTC                                    <  SRR4302533.5074325/94‑1 (MQ=60)

                                                             GTGCTTCGTTGCGGGTATTTCCTGCGGACAGGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGA                                 <  SRR4302533.512383/94‑1 (MQ=60)

                                                             GTGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGA                                 <  SRR4302533.178742/94‑1 (MQ=60)

                                                              TGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAC                                >  SRR4302533.4460850/1‑94 (MQ=60)

                                                              TGCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGAC                                >  SRR4302533.2596619/1‑94 (MQ=60)

                                                               GCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACT                               <  SRR4302533.3064124/94‑1 (MQ=60)

                                                               GCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACT                               <  SRR4302533.853059/94‑1 (MQ=60)

                                                               GCTTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACT                               <  SRR4302533.4235365/94‑1 (MQ=60)

                                                                 TTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGA                             >  SRR4302533.2902339/1‑94 (MQ=60)

                                                                 TTCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGA                             <  SRR4302533.4059263/94‑1 (MQ=60)

                                                                  TCGTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAC                            <  SRR4302533.2703218/94‑1 (MQ=60)

                                                                    GTTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGC                          >  SRR4302533.5160912/1‑94 (MQ=60)

                                                                     TTGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCG                         >  SRR4302533.871857/1‑94 (MQ=60)

                                                                      TGCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGT                        <  SRR4302533.1955776/94‑1 (MQ=60)

                                                                       GCGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTA                       <  SRR4302533.250475/94‑1 (MQ=60)

                                                                        CGGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAA                      >  SRR4302533.454684/1‑94 (MQ=60)

                                                                         GGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAA                     >  SRR4302533.3249917/1‑94 (MQ=60)

                                                                         GGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAA                     <  SRR4302533.1373380/94‑1 (MQ=60)

                                                                         GGGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAA                     >  SRR4302533.2823039/1‑94 (MQ=60)

                                                                          GGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAAC                    >  SRR4302533.3098233/1‑94 (MQ=60)

                                                                          GGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAAC                    <  SRR4302533.594806/94‑1 (MQ=60)

                                                                          GGTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAAC                    <  SRR4302533.5815375/94‑1 (MQ=60)

                                                                           GTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACG                   <  SRR4302533.3509770/94‑1 (MQ=60)

                                                                           GTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACG                   <  SRR4302533.4740259/94‑1 (MQ=60)

                                                                           GTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACG                   >  SRR4302533.4650770/1‑94 (MQ=60)

                                                                           GTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACG                   <  SRR4302533.6293970/94‑1 (MQ=60)

                                                                           GTATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACG                   <  SRR4302533.524619/94‑1 (MQ=60)

                                                                            TATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCTTCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGG                  <  SRR4302533.3393673/94‑1 (MQ=60)

                                                                            TATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGG                  <  SRR4302533.4299043/94‑1 (MQ=60)

                                                                            TATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGG                  >  SRR4302533.2763290/1‑94 (MQ=60)

                                                                            TATTACCTCCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGG                  <  SRR4302533.5677513/94‑1 (MQ=60)

                                                                             ATTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGC                 >  SRR4302533.676025/1‑94 (MQ=60)

                                                                              TTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCTGACTGACGCGTAAACGGCA                <  SRR4302533.2263252/94‑1 (MQ=60)

                                                                              TTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCA                <  SRR4302533.5713234/94‑1 (MQ=60)

                                                                              TTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCA                >  SRR4302533.3428303/1‑94 (MQ=60)

                                                                              TTACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCA                <  SRR4302533.1865276/94‑1 (MQ=60)

                                                                               TACCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAG               <  SRR4302533.4278028/94‑1 (MQ=60)

                                                                                 CCTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGAAGCGTAAACGGCAGGC             >  SRR4302533.395899/1‑94 (MQ=60)

                                                                                  CTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCC            >  SRR4302533.5846970/1‑94 (MQ=60)

                                                                                  CTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCC            <  SRR4302533.3440193/94‑1 (MQ=60)

                                                                                  CTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCC            >  SRR4302533.351664/1‑94 (MQ=60)

                                                                                  CTGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCC            >  SRR4302533.2415367/1‑94 (MQ=60)

                                                                                   TGCGGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGTTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCG           <  SRR4302533.3676668/94‑1 (MQ=60)

                                                                                      GGACATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAA        >  SRR4302533.3267967/1‑94 (MQ=60)

                                                                                          ATGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAATAC    <  SRR4302533.2752736/94‑1 (MQ=60)

                                                                                           TGCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAATACC   >  SRR4302533.6120815/1‑94 (MQ=60)

                                                                                            GCCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAATACCA  <  SRR4302533.1267457/94‑1 (MQ=60)

CTTTCAGCAATAATGCGGTTTTTCACGTAGCGTTCGAAAACTTCAGACAATCCCTGAACGCGTGCTTCGTTGCGGGTATTACCTGCGGACATACCGTTGGAGACGTACAGGTTACCAATGATATTCATCGGAATATAAACGGTCTGATTGTCGGACTGACGCGTAAACGGCAGGCCGCAAATACCA  >  NC_000913/955218‑955403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`