Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 963,286 A→G H79R (CAC→CGC)  himD → integration host factor beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913963,2860AG100.0% 1194.2 / NA 366H79R (CAC→CGC) himDintegration host factor beta subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (216/150);  total (216/150)

Only 100 of 376 total aligned reads displayed.

GCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375
                                                                                           |                                                                                         
gCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         >  1:69811/1‑93 (MQ=255)
gCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         >  2:871030/1‑93 (MQ=255)
gCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         <  1:4284651/93‑1 (MQ=255)
  cgTTTCTTTTTACACTAGCGCGCCACCA‑GTACCCGACGTAATCCGAACACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTGCTCGCttt                                                                                       <  1:131651/92‑1 (MQ=255)
   gTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTa                                                                                      >  1:4809045/1‑93 (MQ=255)
    tttCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTaa                                                                                     >  2:7959248/1‑93 (MQ=255)
      tctcTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   >  1:602622/1‑93 (MQ=255)
      tctcTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   <  1:499569/93‑1 (MQ=255)
       ctctTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  <  2:8800170/93‑1 (MQ=255)
       ctctTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  >  1:8101373/1‑93 (MQ=255)
       ctctTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  >  1:9971608/1‑93 (MQ=255)
           ttGCACTACCGCG‑CACCACGTCCCGGACGTAAGCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  2:3019763/93‑1 (MQ=255)
           ttGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTgga                                                                              >  2:2751588/1‑92 (MQ=255)
           ttGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  1:1979181/93‑1 (MQ=255)
           ttGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  2:664735/93‑1 (MQ=255)
            tGCACTACCGGG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCTTCGCTTTAAACCTGGTa                                                                             <  1:383400/93‑1 (MQ=255)
            tGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTa                                                                             <  2:819551/93‑1 (MQ=255)
              cACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTaaa                                                                           <  2:2418981/93‑1 (MQ=255)
                cTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGa                                                                         >  1:1656056/1‑93 (MQ=255)
                cTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGa                                                                         >  1:1514100/1‑93 (MQ=255)
                 tACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGTTAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTACACCGGGTAAAGaa                                                                        >  2:3875692/1‑93 (MQ=255)
                  aCCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       <  1:7123052/93‑1 (MQ=255)
                  aCCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       <  2:725595/93‑1 (MQ=255)
                     gcg‑cACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgc                                                                    <  2:4019712/93‑1 (MQ=255)
                      cg‑cACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgcg                                                                   <  1:3087945/93‑1 (MQ=255)
                      cg‑cACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgcg                                                                   >  2:1011194/1‑93 (MQ=255)
                          accacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGa                                                                >  1:4231837/1‑93 (MQ=255)
                           ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               >  1:3006143/1‑93 (MQ=255)
                           ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               >  2:6684819/1‑93 (MQ=255)
                           ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  2:484052/93‑1 (MQ=255)
                             acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcg                                                             <  2:768159/93‑1 (MQ=255)
                             acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcg                                                             >  1:4112757/1‑93 (MQ=255)
                              cGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcgc                                                            <  2:6856971/93‑1 (MQ=255)
                               gtcccGGACGTAAT‑CGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCgcgc                                                          <  1:6236821/90‑1 (MQ=255)
                               gTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcgcg                                                           <  2:267531/93‑1 (MQ=255)
                                tACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCgcgc                                                          >  2:813742/1‑93 (MQ=255)
                                tACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCgcgc                                                          >  1:4714715/1‑93 (MQ=255)
                                   cGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCaa                                                       >  2:7545474/1‑93 (MQ=255)
                                    ggACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAat                                                      <  2:441792/93‑1 (MQ=255)
                                    ggACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAat                                                      >  2:333811/1‑93 (MQ=255)
                                     gACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAata                                                     >  2:5263840/1‑93 (MQ=255)
                                     gACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAata                                                     <  1:567502/93‑1 (MQ=255)
                                      aCGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAatat                                                    <  2:3385510/93‑1 (MQ=255)
                                       cGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAtt                                                   <  1:6846366/93‑1 (MQ=255)
                                       cGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAtt                                                   <  2:1792165/93‑1 (MQ=255)
                                        gTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAttt                                                  >  1:10019601/1‑93 (MQ=255)
                                         tAATCCGAAGACTGGCGATAAAGTAGAACTGGACGGAAAATAGGGTCCTCGGTTTAAACCTGGCAAAGAACTGCGCCATCGCGCCAAGATTTa                                                 >  1:5050888/1‑93 (MQ=255)
                                         tAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTa                                                 >  1:3511514/1‑93 (MQ=255)
                                         tAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTa                                                 >  1:9201168/1‑93 (MQ=255)
                                          aaTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTAc                                                >  1:9569990/1‑93 (MQ=255)
                                           aTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACg                                               >  2:8394354/1‑93 (MQ=255)
                                               gAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTa                                           >  1:4302769/1‑93 (MQ=255)
                                                aaGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTaa                                          <  2:499372/93‑1 (MQ=255)
                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  1:5304710/1‑93 (MQ=255)
                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         <  1:584020/93‑1 (MQ=255)
                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  2:6555831/1‑93 (MQ=255)
                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  1:873570/1‑93 (MQ=255)
                                                  gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        <  1:2281457/93‑1 (MQ=255)
                                                  gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        >  2:5791616/1‑93 (MQ=255)
                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:9632400/1‑93 (MQ=255)
                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:6822975/1‑93 (MQ=255)
                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     <  1:3644671/93‑1 (MQ=255)
                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:8493956/1‑93 (MQ=255)
                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     <  2:1541912/93‑1 (MQ=255)
                                                      ggCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttttt                                    >  2:9284895/1‑93 (MQ=255)
                                                      ggCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttttt                                    <  1:8340103/93‑1 (MQ=255)
                                                       gCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttttt                                   >  1:9326633/1‑93 (MQ=255)
                                                       gCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttttt                                   <  1:7853036/93‑1 (MQ=255)
                                                            aaaGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCa                              >  1:3283560/1‑93 (MQ=255)
                                                            aaaGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCa                              <  2:4269821/93‑1 (MQ=255)
                                                               gTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAc                           >  1:8019836/1‑93 (MQ=255)
                                                               gTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAc                           >  1:2104341/1‑93 (MQ=255)
                                                                tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  1:4550621/1‑93 (MQ=255)
                                                                tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  1:3197197/1‑93 (MQ=255)
                                                                   aaCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGa                       <  1:7703711/93‑1 (MQ=255)
                                                                   aaCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCCCGCCAATATTTCCGGTTAAGTTTTTTACTCAAACTTGa                       >  1:6305768/1‑93 (MQ=255)
                                                                    aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  2:4561994/93‑1 (MQ=255)
                                                                    aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  1:2557101/93‑1 (MQ=255)
                                                                    aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  1:6484951/93‑1 (MQ=255)
                                                                     cTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAc                     >  2:6028931/1‑93 (MQ=255)
                                                                     cTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAc                     >  2:2387117/1‑93 (MQ=255)
                                                                      tGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACg                    >  2:5441519/1‑93 (MQ=255)
                                                                      tGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACg                    >  1:8449161/1‑93 (MQ=255)
                                                                         aaggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgaga                 >  2:3502490/1‑93 (MQ=255)
                                                                          aggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgagag                <  1:5379910/93‑1 (MQ=255)
                                                                          aggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgagag                >  1:1602401/1‑93 (MQ=255)
                                                                           ggaaAATACGTTCATCGCTTTACACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTCCTCAAACTAGAACgagaga               <  1:8964183/93‑1 (MQ=255)
                                                                            gaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaa              >  2:6269660/1‑93 (MQ=255)
                                                                             aaaaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaa             <  2:7423621/93‑1 (MQ=255)
                                                                              aaaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaaa            <  1:6631302/93‑1 (MQ=255)
                                                                               aaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGATTTTTACTCAAACTTGAACGAGAGGAAAg           >  1:1120091/1‑93 (MQ=255)
                                                                                aTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGc          <  2:8843237/93‑1 (MQ=255)
                                                                                  aCGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAc        <  2:9757122/93‑1 (MQ=255)
                                                                                   cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  2:1255259/93‑1 (MQ=255)
                                                                                   cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  1:7517097/93‑1 (MQ=255)
                                                                                   cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  1:732614/93‑1 (MQ=255)
                                                                                    gTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCt      <  2:1995859/93‑1 (MQ=255)
                                                                                    gTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAATTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGCAAAGCACCt      >  1:5144661/1‑93 (MQ=255)
                                                                                       ccTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTc   <  2:1471157/93‑1 (MQ=255)
                                                                                        cTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCg  >  1:1673111/1‑93 (MQ=255)
                                                                                           |                                                                                         
GCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 213 total aligned reads displayed.
TCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTG  >  NC_000913/963193‑963379
                                                                                             |                                                                                             
TCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCG                                                                                               <  SRR4302540.5999082/94‑1 (MQ=60)
 CGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGC                                                                                              >  SRR4302540.9452524/1‑94 (MQ=60)
  GGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCT                                                                                             >  SRR4302540.70516/1‑94 (MQ=60)
   GCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTT                                                                                            <  SRR4302540.4331254/94‑1 (MQ=60)
    CAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTT                                                                                           <  SRR4302540.6281334/94‑1 (MQ=60)
     cgtttctttttacactagcgcgccaccaGTACCCGACGTAATCCGAACACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTGCTCGCTTTA                                                                                          <  SRR4302540.133034/66‑1 (MQ=60)
     AGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTA                                                                                          >  SRR4302540.4214904/1‑94 (MQ=60)
     AGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTA                                                                                          >  SRR4302540.1673055/1‑94 (MQ=60)
     AGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTA                                                                                          <  SRR4302540.6588100/94‑1 (MQ=60)
     AGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTA                                                                                          >  SRR4302540.4860519/1‑94 (MQ=60)
      GTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAA                                                                                         <  SRR4302540.750081/94‑1 (MQ=60)
      GTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAA                                                                                         >  SRR4302540.6751705/1‑94 (MQ=60)
        TTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAC                                                                                       >  SRR4302540.609076/1‑94 (MQ=60)
         TCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC                                                                                      >  SRR4302540.10087923/1‑94 (MQ=60)
         TCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC                                                                                      >  SRR4302540.8195399/1‑94 (MQ=60)
         TCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC                                                                                      >  SRR4302540.8195400/1‑94 (MQ=60)
         TCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC                                                                                      <  SRR4302540.504929/94‑1 (MQ=60)
         TCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC                                                                                      >  SRR4302540.9534852/1‑94 (MQ=60)
          CTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCT                                                                                     >  SRR4302540.4844772/1‑94 (MQ=60)
          CTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGCTCCTCGCTTTAAACCT                                                                                     >  SRR4302540.9029747/1‑94 (MQ=60)
           TCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTG                                                                                    <  SRR4302540.10116427/94‑1 (MQ=60)
            CTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGCTCCTCGCTTTAAACCTGG                                                                                   >  SRR4302540.7972218/1‑94 (MQ=60)
              TTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTA                                                                                 <  SRR4302540.2000656/94‑1 (MQ=60)
              TTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTA                                                                                 >  SRR4302540.1617202/1‑94 (MQ=60)
               TGCACTACCGGGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCTTCGCTTTAAACCTGGTAA                                                                                <  SRR4302540.387361/94‑1 (MQ=60)
                 CACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAG                                                                              >  SRR4302540.6601088/1‑94 (MQ=60)
                 CACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAG                                                                              >  SRR4302540.5067981/1‑94 (MQ=60)
                  ACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGA                                                                             >  SRR4302540.2474671/1‑94 (MQ=60)
                  ACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGA                                                                             >  SRR4302540.1674103/1‑94 (MQ=60)
                  ACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGA                                                                             >  SRR4302540.1530838/1‑94 (MQ=60)
                   CTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAA                                                                            <  SRR4302540.5855348/94‑1 (MQ=60)
                     TCCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACT                                                                          <  SRR4302540.1270358/94‑1 (MQ=60)
                     ACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACT                                                                          <  SRR4302540.8530469/94‑1 (MQ=60)
                     ACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACT                                                                          <  SRR4302540.7202370/94‑1 (MQ=60)
                     ACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACT                                                                          <  SRR4302540.269707/94‑1 (MQ=60)
                      CCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTG                                                                         >  SRR4302540.6576170/1‑94 (MQ=60)
                          GCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCG                                                                     >  SRR4302540.4304326/1‑94 (MQ=60)
                          GCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCG                                                                     >  SRR4302540.4189906/1‑94 (MQ=60)
                          GCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGAAAAGAACTGCGCG                                                                     >  SRR4302540.2944124/1‑94 (MQ=60)
                           CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGA                                                                    >  SRR4302540.4277897/1‑94 (MQ=60)
                            ACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAT                                                                   <  SRR4302540.4571277/94‑1 (MQ=60)
                            ACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAT                                                                   >  SRR4302540.3039238/1‑94 (MQ=60)
                            ACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACGGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAT                                                                   <  SRR4302540.4695644/94‑1 (MQ=60)
                              CACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCG                                                                 >  SRR4302540.1873491/1‑94 (MQ=60)
                              CACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCG                                                                 >  SRR4302540.4157156/1‑94 (MQ=60)
                              CACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCG                                                                 >  SRR4302540.2131049/1‑94 (MQ=60)
                               ACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGC                                                                >  SRR4302540.5138642/1‑94 (MQ=60)
                               ACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGC                                                                >  SRR4302540.8770784/1‑94 (MQ=60)
                                CGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCG                                                               >  SRR4302540.5363907/1‑94 (MQ=60)
                                CGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCG                                                               >  SRR4302540.3976536/1‑94 (MQ=60)
                                CGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCG                                                               <  SRR4302540.358216/94‑1 (MQ=60)
                                 GTCCCGGACGTAAT‑CGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCC                                                             <  SRR4302540.6306206/94‑1 (MQ=60)
                                 GTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGC                                                              >  SRR4302540.4765082/1‑94 (MQ=60)
                                 GTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGC                                                              >  SRR4302540.5489710/1‑94 (MQ=60)
                                 GTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGC                                                              >  SRR4302540.4765081/1‑94 (MQ=60)
                                  TACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCC                                                             >  SRR4302540.8303145/1‑94 (MQ=60)
                                   ACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCA                                                            >  SRR4302540.3908770/1‑94 (MQ=60)
                                   ACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCA                                                            >  SRR4302540.5273469/1‑94 (MQ=60)
                                   ACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCA                                                            <  SRR4302540.4661453/94‑1 (MQ=60)
                                    CCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAA                                                           >  SRR4302540.7122238/1‑94 (MQ=60)
                                    CCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACCTTCCTCGCTTTAAACCTGGTAAAGACCTGCGCGATCGCGCCAA                                                           >  SRR4302540.10075305/1‑94 (MQ=60)
                                     CGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAAT                                                          >  SRR4302540.7363157/1‑94 (MQ=60)
                                     CGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAAT                                                          <  SRR4302540.3151131/94‑1 (MQ=60)
                                      GGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATA                                                         >  SRR4302540.5265867/1‑94 (MQ=60)
                                       GACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAT                                                        <  SRR4302540.573670/94‑1 (MQ=60)
                                       GACGTAATCAGAAGACTGGCGCTAAAGTGGAACTGGAAGTAAAAGACGTTCCTCGTTTGAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAT                                                        <  SRR4302540.573389/94‑1 (MQ=60)
                                        ACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATT                                                       <  SRR4302540.9405795/94‑1 (MQ=60)
                                        ACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATT                                                       >  SRR4302540.3742403/1‑94 (MQ=60)
                                         CGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTGCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTA                                                      >  SRR4302540.5251615/1‑94 (MQ=60)
                                         CGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTT                                                      >  SRR4302540.10136214/1‑94 (MQ=60)
                                         CGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTT                                                      <  SRR4302540.3293006/94‑1 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGACGGAAAATAGGGTCCTCGGTTTAAACCTGGCAAAGAACTGCGCCATCGCGCCAAGATTTA                                                     >  SRR4302540.5105500/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.7744225/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.3549768/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.1087279/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.791111/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.7977333/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.3081926/1‑94 (MQ=60)
                                          GTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTA                                                     >  SRR4302540.9311560/1‑94 (MQ=60)
                                           TAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTAC                                                    >  SRR4302540.9683057/1‑94 (MQ=60)
                                           TAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTAC                                                    <  SRR4302540.2101066/94‑1 (MQ=60)
                                           TAATCCGAAGACTGACGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAACCCTGGTAAAGAACTGCGCGATCGCGCCAATATTTAC                                                    <  SRR4302540.7145532/94‑1 (MQ=60)
                                            AATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACG                                                   >  SRR4302540.2357871/1‑94 (MQ=60)
                                            AATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACG                                                   >  SRR4302540.7896035/1‑94 (MQ=60)
                                                CGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTA                                               >  SRR4302540.4349601/1‑94 (MQ=60)
                                                CGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTA                                               >  SRR4302540.3762811/1‑94 (MQ=60)
                                                CGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTA                                               <  SRR4302540.1527490/94‑1 (MQ=60)
                                                  AAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACTGTTAAG                                             >  SRR4302540.9152725/1‑94 (MQ=60)
                                                  AAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAG                                             >  SRR4302540.4850102/1‑94 (MQ=60)
                                                  AAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAG                                             >  SRR4302540.5362754/1‑94 (MQ=60)
                                                  AAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAG                                             <  SRR4302540.946209/94‑1 (MQ=60)
                                                  AAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAG                                             >  SRR4302540.882839/1‑94 (MQ=60)
                                                   AGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGTCCGATCGCGCCAATATTTACGGGTAAGT                                            >  SRR4302540.3486134/1‑94 (MQ=60)
                                                   AGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGT                                            <  SRR4302540.590328/94‑1 (MQ=60)
                                                    GACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTCAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTT                                           >  SRR4302540.5113654/1‑94 (MQ=60)
                                                    GACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTT                                           <  SRR4302540.2305969/94‑1 (MQ=60)
                                                     ACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTT                                          >  SRR4302540.7328106/1‑94 (MQ=60)
                                                     ACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTT                                          <  SRR4302540.165654/94‑1 (MQ=60)
                                                     ACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTT                                          <  SRR4302540.8937821/94‑1 (MQ=60)
                                                      CTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTT                                         >  SRR4302540.4313658/1‑94 (MQ=60)
                                                      CTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTT                                         >  SRR4302540.3395039/1‑94 (MQ=60)
                                                      CTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTT                                         <  SRR4302540.4594994/94‑1 (MQ=60)
                                                       TGTCGATAAAGTAGAACTGGAAGGAAGATACGTTCCGCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTT                                        <  SRR4302540.8533738/94‑1 (MQ=60)
                                                       TGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTCCGGTTAAGTTTAT                                        >  SRR4302540.2568484/1‑94 (MQ=60)
                                                        GGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTT                                       >  SRR4302540.9437868/1‑94 (MQ=60)
                                                        GGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTT                                       <  SRR4302540.9057910/94‑1 (MQ=60)
                                                        GGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTT                                       <  SRR4302540.8436909/94‑1 (MQ=60)
                                                         GCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTA                                      >  SRR4302540.9377314/1‑94 (MQ=60)
                                                         GCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTA                                      <  SRR4302540.7944795/94‑1 (MQ=60)
                                                         GCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTA                                      <  SRR4302540.7944796/94‑1 (MQ=60)
                                                          CGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAC                                     >  SRR4302540.6539626/1‑94 (MQ=60)
                                                          CGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAC                                     >  SRR4302540.9298776/1‑94 (MQ=60)
                                                          CGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGGAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAC                                     >  SRR4302540.5804068/1‑94 (MQ=60)
                                                           GATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACT                                    >  SRR4302540.9902436/1‑94 (MQ=60)
                                                            ATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTC                                   >  SRR4302540.6803858/1‑94 (MQ=60)
                                                            ATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTC                                   <  SRR4302540.493613/94‑1 (MQ=60)
                                                            ATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTC                                   <  SRR4302540.493616/94‑1 (MQ=60)
                                                             TAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCA                                  >  SRR4302540.1017484/1‑94 (MQ=60)
                                                             TAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCA                                  >  SRR4302540.3319450/1‑94 (MQ=60)
                                                             TAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCA                                  <  SRR4302540.6828825/94‑1 (MQ=60)
                                                             TAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCA                                  >  SRR4302540.3056030/1‑94 (MQ=60)
                                                              AAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAA                                 <  SRR4302540.6070369/94‑1 (MQ=60)
                                                               AAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAA                                <  SRR4302540.1552318/94‑1 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAANAACTGCGCGATCGCGCCAATATTNNNNGTNAAGTTTTNTNCTNANNN                               >  SRR4302540.8799288/1‑94 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAC                               >  SRR4302540.8113113/1‑94 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAC                               <  SRR4302540.4423968/94‑1 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAC                               >  SRR4302540.2126927/1‑94 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAC                               >  SRR4302540.7298937/1‑94 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAC                               <  SRR4302540.5388716/94‑1 (MQ=60)
                                                                AGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAC                               <  SRR4302540.594942/94‑1 (MQ=60)
                                                                 GTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACT                              >  SRR4302540.434261/1‑94 (MQ=60)
                                                                 GTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACT                              >  SRR4302540.3231924/1‑94 (MQ=60)
                                                                 GTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACT                              >  SRR4302540.4599837/1‑94 (MQ=60)
                                                                    GAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCCAACTTGA                           >  SRR4302540.5842888/1‑94 (MQ=60)
                                                                    GAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCCCGCCAATATTTCCGGTTAAGTTTTTTACTCAAACTTGA                           >  SRR4302540.6375989/1‑94 (MQ=60)
                                                                     AACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAA                          <  SRR4302540.7791848/94‑1 (MQ=60)
                                                                     AACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAA                          >  SRR4302540.1217379/1‑94 (MQ=60)
                                                                     AACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAA                          >  SRR4302540.2620137/1‑94 (MQ=60)
                                                                      acgtGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAC                         <  SRR4302540.6557074/90‑1 (MQ=60)
                                                                      ACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAC                         <  SRR4302540.5112417/94‑1 (MQ=60)
                                                                      ACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAC                         <  SRR4302540.3285785/94‑1 (MQ=60)
                                                                      ACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAC                         <  SRR4302540.2584661/94‑1 (MQ=60)
                                                                      ACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAC                         <  SRR4302540.6557075/94‑1 (MQ=60)
                                                                       CTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCCATATTTATGGCTAAGTTTTTTACTCAAACTTGAACG                        >  SRR4302540.6336209/1‑94 (MQ=60)
                                                                       CTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACG                        >  SRR4302540.8151311/1‑94 (MQ=60)
                                                                       CTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACG                        >  SRR4302540.8547251/1‑94 (MQ=60)
                                                                       CTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACG                        >  SRR4302540.5388835/1‑94 (MQ=60)
                                                                        TGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGA                       >  SRR4302540.1348466/1‑94 (MQ=60)
                                                                           AAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAG                    >  SRR4302540.4248883/1‑94 (MQ=60)
                                                                           AAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAG                    >  SRR4302540.1619928/1‑94 (MQ=60)
                                                                           AAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAG                    >  SRR4302540.9675089/1‑94 (MQ=60)
                                                                            AGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGA                   >  SRR4302540.5097720/1‑94 (MQ=60)
                                                                             GGAAAATACGTTCATCGCTTTACACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTCCTCAAACTAGAACGAGAGAA                  <  SRR4302540.9070358/94‑1 (MQ=60)
                                                                              GAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAA                 <  SRR4302540.758625/94‑1 (MQ=60)
                                                                               AAAATCCGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAA                <  SRR4302540.4313176/94‑1 (MQ=60)
                                                                               AAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAA                <  SRR4302540.5623141/94‑1 (MQ=60)
                                                                               AAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAA                <  SRR4302540.1416276/94‑1 (MQ=60)
                                                                               AAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAA                <  SRR4302540.6359103/94‑1 (MQ=60)
                                                                                AAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCCAACTTGAACGAGAGAAAAC               >  SRR4302540.8155495/1‑94 (MQ=60)
                                                                                AAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAG               <  SRR4302540.8613584/94‑1 (MQ=60)
                                                                                AAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAG               <  SRR4302540.3129331/94‑1 (MQ=60)
                                                                                AAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAG               >  SRR4302540.1299287/1‑94 (MQ=60)
                                                                                AAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAG               <  SRR4302540.6704703/94‑1 (MQ=60)
                                                                                AAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGATTTTTACTCAAACTTGAACGAGAGGAAAG               >  SRR4302540.1131713/1‑94 (MQ=60)
                                                                                  ATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCA             <  SRR4302540.3104596/94‑1 (MQ=60)
                                                                                   TACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAC            >  SRR4302540.36329/1‑94 (MQ=60)
                                                                                    ACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACC           >  SRR4302540.7141824/1‑94 (MQ=60)
                                                                                    ACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACC           >  SRR4302540.6979389/1‑94 (MQ=60)
                                                                                    ACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACC           >  SRR4302540.8505705/1‑94 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          <  SRR4302540.6186869/94‑1 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          >  SRR4302540.2022953/1‑94 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          <  SRR4302540.8718194/94‑1 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          <  SRR4302540.7601146/94‑1 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          >  SRR4302540.1688164/1‑94 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          <  SRR4302540.4026719/94‑1 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          <  SRR4302540.740451/94‑1 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCT          <  SRR4302540.740452/94‑1 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGAACCT          >  SRR4302540.1688163/1‑94 (MQ=60)
                                                                                     CGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAATTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGCAAAGCACCT          >  SRR4302540.5200382/1‑94 (MQ=60)
                                                                                      GTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTG         <  SRR4302540.3547285/94‑1 (MQ=60)
                                                                                      GTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTG         >  SRR4302540.7902256/1‑94 (MQ=60)
                                                                                      GTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTG         >  SRR4302540.4859595/1‑94 (MQ=60)
                                                                                      GTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGATTTTTACTCAAACTTGAACGAGAGCAAAGCACCTG         >  SRR4302540.1689526/1‑94 (MQ=60)
                                                                                        TCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGaactggtg       >  SRR4302540.3592214/1‑86 (MQ=60)
                                                                                        TCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTG       >  SRR4302540.3592213/1‑94 (MQ=60)
                                                                                        TCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTC       >  SRR4302540.2185788/1‑94 (MQ=60)
                                                                                        TCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTC       >  SRR4302540.3296732/1‑94 (MQ=60)
                                                                                         CCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG      >  SRR4302540.1691293/1‑94 (MQ=60)
                                                                                         CCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG      >  SRR4302540.5916219/1‑94 (MQ=60)
                                                                                         CCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG      >  SRR4302540.6517044/1‑94 (MQ=60)
                                                                                          CTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGG     <  SRR4302540.1888367/94‑1 (MQ=60)
                                                                                          CTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGG     >  SRR4302540.930948/1‑94 (MQ=60)
                                                                                          CTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGG     <  SRR4302540.1924474/94‑1 (MQ=60)
                                                                                          CTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGG     <  SRR4302540.6994838/94‑1 (MQ=60)
                                                                                           TCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCCCCTGTCGGG    <  SRR4302540.9190323/94‑1 (MQ=60)
                                                                                           TCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGG    >  SRR4302540.9316660/1‑94 (MQ=60)
                                                                                            CGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGG   >  SRR4302540.6094222/1‑94 (MQ=60)
                                                                                             GCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTG  >  SRR4302540.7805756/1‑94 (MQ=60)
                                                                                             GCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTG  >  SRR4302540.8772277/1‑94 (MQ=60)
                                                                                             GCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTG  <  SRR4302540.10143338/94‑1 (MQ=60)
                                                                                             |                                                                                             
TCGGCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTG  >  NC_000913/963193‑963379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑