Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
986,152 |
A→G |
G18G (GGT→GGC) |
ompF ← |
outer membrane protein 1a |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 986,152 | 0 | A | G | 100.0%
| 784.8
/ NA
| 239 | G18G (GGT→GGC) | ompF | outer membrane protein 1a |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (119/120); total (119/120) |
Only 100 of 242 total aligned reads displayed.
ACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTATGACACCT > NC_000913/986062‑986240
|
aCCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGcc > 2:4143158/1‑93 (MQ=255)
cTTGGAAAAATAATGCAGCCCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGc < 2:1151889/93‑1 (MQ=255)
cTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGc < 2:1694019/93‑1 (MQ=255)
cTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGc > 1:144699/1‑93 (MQ=255)
ttGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGct > 2:435401/1‑93 (MQ=255)
ttGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGct > 2:6241291/1‑93 (MQ=255)
tGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGcta > 1:1212246/1‑93 (MQ=255)
ggAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGctac > 1:6216989/1‑93 (MQ=255)
ggAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGctac < 1:2226368/93‑1 (MQ=255)
aaaTAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAAc < 1:601604/93‑1 (MQ=255)
aaaTAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAAc < 1:2073240/93‑1 (MQ=255)
aataatGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACa > 1:1363967/1‑93 (MQ=255)
aataatGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACa < 1:4821493/93‑1 (MQ=255)
aataatGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACa > 2:2377287/1‑93 (MQ=255)
taatGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACaga > 1:4793983/1‑93 (MQ=255)
atGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGc > 2:6196894/1‑93 (MQ=255)
atGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGc > 2:3222805/1‑93 (MQ=255)
tGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCa > 2:1754260/1‑93 (MQ=255)
gCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAg < 1:823776/93‑1 (MQ=255)
cAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAgg < 2:3055051/93‑1 (MQ=255)
cAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAgg < 1:4485857/93‑1 (MQ=255)
aGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAggg > 1:2173247/1‑93 (MQ=255)
gACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGa > 2:5279776/1‑93 (MQ=255)
aCCAACAGCTTTACCGTACAGATCTACTTTGTTGCTATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGAc < 2:4701412/93‑1 (MQ=255)
ccAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACg > 1:4062714/1‑93 (MQ=255)
cAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGa > 2:903974/1‑93 (MQ=255)
aaCAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGAt > 2:2361660/1‑93 (MQ=255)
aaCAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGAt > 1:4155870/1‑93 (MQ=255)
aCAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATc > 1:3847234/1‑93 (MQ=255)
aCAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATc < 1:10227/93‑1 (MQ=255)
aCAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATc > 1:3264521/1‑93 (MQ=255)
cAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCa < 1:5103748/93‑1 (MQ=255)
aGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCAc > 1:3104207/1‑93 (MQ=255)
aGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCAc < 2:3833014/93‑1 (MQ=255)
gCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCTGTGCCTGCTACTAACAGAGCAGGGACGATCACt > 1:4582183/1‑93 (MQ=255)
gCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACt < 2:1363448/93‑1 (MQ=255)
cTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTg < 2:452397/93‑1 (MQ=255)
cTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTg > 1:2475941/1‑93 (MQ=255)
ttACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGcc > 2:3362360/1‑93 (MQ=255)
tACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCa < 1:2125/93‑1 (MQ=255)
tACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCa < 2:726593/93‑1 (MQ=255)
tACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCa > 1:1763427/1‑93 (MQ=255)
tACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCa < 2:4132488/93‑1 (MQ=255)
ccGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGa > 1:1654070/1‑93 (MQ=255)
tACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAata > 2:5895129/1‑93 (MQ=255)
tACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAata < 1:5084824/93‑1 (MQ=255)
tACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAata < 2:5791411/93‑1 (MQ=255)
tACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAata > 2:841719/1‑93 (MQ=255)
tACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAata < 1:868947/93‑1 (MQ=255)
aCAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAatat < 1:4337335/93‑1 (MQ=255)
aCAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAatat > 1:694361/1‑93 (MQ=255)
aCAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAatat > 2:4771158/1‑93 (MQ=255)
aCAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAatat < 1:3825302/93‑1 (MQ=255)
cAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATAtt < 1:2000966/93‑1 (MQ=255)
aGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTg > 1:793383/1‑93 (MQ=255)
aGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTg > 1:4949888/1‑93 (MQ=255)
gATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTgc > 2:2767432/1‑93 (MQ=255)
tCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTgcgc > 2:3506123/1‑93 (MQ=255)
cTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTtca > 1:1327751/1‑93 (MQ=255)
ttgttgCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTtcatc < 2:2526669/93‑1 (MQ=255)
ttgttgCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTtcatc < 2:6027150/93‑1 (MQ=255)
tgttgCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTtcatca < 1:5738296/93‑1 (MQ=255)
gttgCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTcatcat < 1:4070815/93‑1 (MQ=255)
tgCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCatta < 2:1293817/93‑1 (MQ=255)
tgCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCatta < 1:2688412/93‑1 (MQ=255)
gCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCattat > 1:5132312/1‑93 (MQ=255)
ccATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCattatt < 2:4490538/93‑1 (MQ=255)
ccATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCattatt < 1:5387468/93‑1 (MQ=255)
cATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAttattt > 2:5486311/1‑93 (MQ=255)
cATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAttattt > 2:679462/1‑93 (MQ=255)
aTCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAttattta < 1:322543/93‑1 (MQ=255)
tCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAttatttat > 2:3266391/1‑93 (MQ=255)
tCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAttatttat < 1:177594/93‑1 (MQ=255)
tCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAttatttat > 2:5605344/1‑93 (MQ=255)
tttGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATttatta > 2:2134132/1‑93 (MQ=255)
tttGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATttatta < 1:282442/93‑1 (MQ=255)
tGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTAcc < 1:1934807/93‑1 (MQ=255)
tGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTAcc < 2:2622151/93‑1 (MQ=255)
gTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTAccc < 1:5226733/93‑1 (MQ=255)
gTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTAccc < 2:3651401/93‑1 (MQ=255)
tataGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTc > 1:1552300/1‑93 (MQ=255)
tataGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTc > 1:6065829/1‑93 (MQ=255)
ataGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCa > 2:509135/1‑93 (MQ=255)
taGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCAt > 2:1082651/1‑93 (MQ=255)
aGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATg < 1:3286512/93‑1 (MQ=255)
gATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATgg > 2:1581464/1‑93 (MQ=255)
tCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑tttt < 1:1128877/93‑1 (MQ=255)
cTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttt < 2:3896280/93‑1 (MQ=255)
cTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttt < 2:3740935/93‑1 (MQ=255)
tGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑tttttt > 2:2999067/1‑93 (MQ=255)
aGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttttttt < 2:5381467/93‑2 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttttttta > 1:4622754/1‑91 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttttttta > 2:3959774/1‑91 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttttttta < 1:2256648/93‑3 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑ttttttttta < 2:2660095/93‑3 (MQ=255)
cGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑tttttttttat < 1:5575343/93‑4 (MQ=255)
cGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑tttttttttat < 2:2227534/93‑4 (MQ=255)
gTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑tttttttttatg > 1:5842214/1‑89 (MQ=255)
gCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGacac > 1:3542979/1‑93 (MQ=255)
cAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACAcc > 1:6024279/1‑93 (MQ=255)
|
ACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTATGACACCT > NC_000913/986062‑986240
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTATGACACCTGCCA > NC_000913/986059‑986244
|
GTTACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTG < SRR4302533.4082735/94‑1 (MQ=60)
CTTACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTG < SRR4302533.5606836/94‑1 (MQ=60)
TTACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGC > SRR4302533.1604373/1‑94 (MQ=60)
TACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCC > SRR4302533.2015148/1‑94 (MQ=60)
ACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCT > SRR4302533.5423275/1‑94 (MQ=60)
ACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCT > SRR4302533.2374567/1‑94 (MQ=60)
CCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTG > SRR4302533.5212349/1‑94 (MQ=60)
CCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGC > SRR4302533.145627/1‑94 (MQ=60)
TTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTA > SRR4302533.960394/1‑94 (MQ=60)
TTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTA > SRR4302533.1219538/1‑94 (MQ=60)
TGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTAC > SRR4302533.4243278/1‑94 (MQ=60)
TGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTAC > SRR4302533.6254267/1‑94 (MQ=60)
TGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTAC > SRR4302533.1436729/1‑94 (MQ=60)
GGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACT < SRR4302533.2240111/94‑1 (MQ=60)
AAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAAC > SRR4302533.4646878/1‑94 (MQ=60)
AAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACA < SRR4302533.605141/94‑1 (MQ=60)
AAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACA > SRR4302533.1372160/1‑94 (MQ=60)
AAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACA > SRR4302533.5958190/1‑94 (MQ=60)
AAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACA < SRR4302533.2086009/94‑1 (MQ=60)
AATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAG < SRR4302533.4850706/94‑1 (MQ=60)
ATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGA > SRR4302533.4823027/1‑94 (MQ=60)
TAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAG < SRR4302533.4421737/94‑1 (MQ=60)
AATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGC < SRR4302533.4007641/94‑1 (MQ=60)
ATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCA < SRR4302533.6083919/94‑1 (MQ=60)
TGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAG < SRR4302533.1846410/94‑1 (MQ=60)
GCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGG < SRR4302533.828610/94‑1 (MQ=60)
CAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGG > SRR4302533.2186637/1‑94 (MQ=60)
CAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGG > SRR4302533.4984545/1‑94 (MQ=60)
CAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGG < SRR4302533.4513014/94‑1 (MQ=60)
AGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGA > SRR4302533.4562534/1‑94 (MQ=60)
ACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACG > SRR4302533.4087444/1‑94 (MQ=60)
CAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGAT > SRR4302533.4181050/1‑94 (MQ=60)
AGCAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATC < SRR4302533.3252859/94‑1 (MQ=60)
AACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATC > SRR4302533.3870727/1‑94 (MQ=60)
AACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATC > SRR4302533.226698/1‑94 (MQ=60)
AACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATC > SRR4302533.3107801/1‑94 (MQ=60)
AACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATC > SRR4302533.3284660/1‑94 (MQ=60)
ACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCA < SRR4302533.10311/94‑1 (MQ=60)
CAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCAC < SRR4302533.5134577/94‑1 (MQ=60)
CAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCAC > SRR4302533.3123290/1‑94 (MQ=60)
AGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCTGTGCCTGCTACTAACAGAGCAGGGACGATCACT > SRR4302533.4609949/1‑94 (MQ=60)
AGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACT < SRR4302533.4916630/94‑1 (MQ=60)
AGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACT > SRR4302533.3653664/1‑94 (MQ=60)
AGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACT < SRR4302533.851644/94‑1 (MQ=60)
GCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTG > SRR4302533.1657200/1‑94 (MQ=60)
GCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTG > SRR4302533.2491213/1‑94 (MQ=60)
TTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCA > SRR4302533.1774165/1‑94 (MQ=60)
TACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAG > SRR4302533.794704/1‑94 (MQ=60)
TACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAG < SRR4302533.2140/94‑1 (MQ=60)
TACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAG < SRR4302533.1991379/94‑1 (MQ=60)
ACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGA > SRR4302533.1664085/1‑94 (MQ=60)
ACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGA > SRR4302533.1664086/1‑94 (MQ=60)
CCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAA < SRR4302533.5797302/94‑1 (MQ=60)
GTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATA < SRR4302533.4137992/94‑1 (MQ=60)
TACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATAT < SRR4302533.5115553/94‑1 (MQ=60)
TACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATAT < SRR4302533.874046/94‑1 (MQ=60)
TACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATAT < SRR4302533.5115552/94‑1 (MQ=60)
TACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATAT > SRR4302533.698466/1‑94 (MQ=60)
ACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATT < SRR4302533.5674765/94‑1 (MQ=60)
ACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATT < SRR4302533.4363476/94‑1 (MQ=60)
ACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATT < SRR4302533.3848688/94‑1 (MQ=60)
CAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTG > SRR4302533.211694/1‑94 (MQ=60)
CAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTG > SRR4302533.798052/1‑94 (MQ=60)
CAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTG > SRR4302533.4979868/1‑94 (MQ=60)
CAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTG < SRR4302533.2013288/94‑1 (MQ=60)
AGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGC > SRR4302533.2209106/1‑94 (MQ=60)
AGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGC < SRR4302533.2622146/94‑1 (MQ=60)
ATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGC > SRR4302533.4420231/1‑94 (MQ=60)
ATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGC > SRR4302533.6153089/1‑94 (MQ=60)
TCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCT < SRR4302533.1285658/94‑1 (MQ=60)
TCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCT < SRR4302533.1265274/94‑1 (MQ=60)
TACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTC > SRR4302533.294170/1‑94 (MQ=60)
ACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCA > SRR4302533.385742/1‑94 (MQ=60)
ACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCA > SRR4302533.3294846/1‑94 (MQ=60)
ACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCA < SRR4302533.6058572/94‑1 (MQ=60)
ACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCA > SRR4302533.1335719/1‑94 (MQ=60)
CTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCAT > SRR4302533.2016556/1‑94 (MQ=60)
CTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCAT < SRR4302533.2376274/94‑1 (MQ=60)
TTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCA < SRR4302533.1336773/94‑1 (MQ=60)
TTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCA < SRR4302533.729526/94‑1 (MQ=60)
TGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCAT < SRR4302533.5772929/94‑1 (MQ=60)
GTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATT < SRR4302533.4095597/94‑1 (MQ=60)
GTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATT < SRR4302533.1163767/94‑1 (MQ=60)
TTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTA < SRR4302533.1796317/94‑1 (MQ=60)
TTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTA < SRR4302533.4731134/94‑1 (MQ=60)
TGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTAT < SRR4302533.82123/94‑1 (MQ=60)
TGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTAT < SRR4302533.2704893/94‑1 (MQ=60)
TGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTAT > SRR4302533.5163317/1‑94 (MQ=60)
GCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATT < SRR4302533.3261243/94‑1 (MQ=60)
GCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATT < SRR4302533.4010914/94‑1 (MQ=60)
CCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTT < SRR4302533.5373840/94‑1 (MQ=60)
CCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTT < SRR4302533.5419840/94‑1 (MQ=60)
CCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTT > SRR4302533.1113503/1‑94 (MQ=60)
CATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTA > SRR4302533.3437695/1‑94 (MQ=60)
CATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTA > SRR4302533.4797588/1‑94 (MQ=60)
ATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTAT < SRR4302533.2143115/94‑1 (MQ=60)
ATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTAT < SRR4302533.324513/94‑1 (MQ=60)
ATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTAT > SRR4302533.5303885/1‑94 (MQ=60)
TCTTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATT < SRR4302533.178705/94‑1 (MQ=60)
TTTGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTAC < SRR4302533.284169/94‑1 (MQ=60)
TGTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCC < SRR4302533.1946610/94‑1 (MQ=60)
GTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCT < SRR4302533.5258183/94‑1 (MQ=60)
GTTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCT < SRR4302533.6343004/94‑1 (MQ=60)
TTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTC < SRR4302533.1390753/94‑1 (MQ=60)
TTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTC > SRR4302533.1533169/1‑94 (MQ=60)
TTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTC > SRR4302533.1561646/1‑94 (MQ=60)
TTATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTC > SRR4302533.6102541/1‑94 (MQ=60)
ATAGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCAT < SRR4302533.4838015/94‑1 (MQ=60)
AGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG > SRR4302533.618324/1‑94 (MQ=60)
AGATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG < SRR4302533.3306801/94‑1 (MQ=60)
GATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑T > SRR4302533.5702259/1‑94 (MQ=60)
TCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTT < SRR4302533.1135584/94‑1 (MQ=60)
TCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTT < SRR4302533.514522/94‑1 (MQ=60)
TGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTT < SRR4302533.6056141/94‑1 (MQ=60)
CAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTT > SRR4302533.5141487/1‑94 (MQ=60)
AGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTta > SRR4302533.4650774/1‑92 (MQ=60)
GCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTtat < SRR4302533.2270612/94‑4 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATG < SRR4302533.5609038/94‑1 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATG < SRR4302533.3365347/94‑1 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATG > SRR4302533.5877536/1‑94 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATG < SRR4302533.4964878/94‑1 (MQ=60)
GTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGA < SRR4302533.313322/94‑1 (MQ=60)
GTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGA > SRR4302533.33619/1‑94 (MQ=60)
GTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGA > SRR4302533.4007128/1‑94 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGAC < SRR4302533.2657707/94‑1 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGAC > SRR4302533.2195159/1‑94 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGAC > SRR4302533.2819120/1‑94 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGAC > SRR4302533.1778348/1‑94 (MQ=60)
TGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACAC > SRR4302533.3564813/1‑94 (MQ=60)
GCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACC > SRR4302533.6060786/1‑94 (MQ=60)
GCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACC < SRR4302533.4093023/94‑1 (MQ=60)
CAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCT > SRR4302533.1753233/1‑94 (MQ=60)
AGTGCCTGTTACTACCAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCTG < SRR4302533.4145198/94‑1 (MQ=60)
AGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCTG > SRR4302533.1172174/1‑94 (MQ=60)
TGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCTGCC > SRR4302533.2385027/1‑94 (MQ=60)
TGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCTGCC < SRR4302533.573151/94‑1 (MQ=60)
TGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCTGCC < SRR4302533.3583405/94‑1 (MQ=60)
GCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTTATGACACCTGCCA > SRR4302533.4819809/1‑94 (MQ=60)
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GTTACCCTTGGAAAAATAATGCAGACCAACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTATAGATTTCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGG‑TTTTTTTTATGACACCTGCCA > NC_000913/986059‑986244
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
