Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
986,231 |
(T)8→9 |
intergenic (‑26/+577) |
ompF ← / ← asnS |
outer membrane protein 1a/asparagine tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 986,223 | 1 | . | T | 99.4%
| 652.3
/ ‑3.7
| 176 | intergenic (‑18/+585) | ompF/asnS | outer membrane protein 1a/asparagine tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (83/92); total (84/92) |
| Fisher's exact test for biased strand distribution p-value = 4.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 210 total aligned reads displayed.
GATTTCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATG > NC_000913/986131‑986310
|
gATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATg‑g > 1:614712/1‑93 (MQ=255)
gATTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATg‑g > 2:1581464/1‑93 (MQ=255)
aTTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑t < 2:590122/93‑1 (MQ=255)
aTTTCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑t > 1:5668022/1‑93 (MQ=255)
tCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑tttt < 1:1128877/93‑1 (MQ=255)
tCTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑tttt < 1:511482/93‑1 (MQ=255)
cTGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttt < 2:3896280/93‑1 (MQ=255)
tGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑tttttt < 1:6019664/93‑1 (MQ=255)
tGCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑tttttt > 2:2999067/1‑93 (MQ=255)
gCAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttttt < 2:3316265/93‑1 (MQ=255)
aGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttttttt < 2:5381467/93‑2 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttttttta > 1:4622754/1‑91 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttttttta < 1:2256648/93‑3 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttttttta < 2:2660095/93‑3 (MQ=255)
gCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑ttttttttta > 2:3959774/1‑91 (MQ=255)
cGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑tttttttttat < 1:5575343/93‑4 (MQ=255)
cGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑tttttttttat < 1:4934997/93‑4 (MQ=255)
ttGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGac < 2:904610/93‑1 (MQ=255)
aGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCt < 2:2262405/93‑1 (MQ=255)
aGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCt > 1:1742639/1‑93 (MQ=255)
gtgccTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTg > 2:4696898/4‑93 (MQ=255)
tgccTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGc < 1:3561460/91‑1 (MQ=255)
gccTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGcc > 1:2370364/2‑93 (MQ=255)
gccTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGcc > 2:167402/2‑93 (MQ=255)
cTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACACCTGCCAc < 2:1004084/93‑1 (MQ=255)
cTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCat > 1:3090172/1‑92 (MQ=255)
cTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCAc < 1:1192507/93‑1 (MQ=255)
tGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACt > 2:3060510/1‑93 (MQ=255)
gCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTg > 2:4402229/1‑93 (MQ=255)
tactaACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑TTTTTTTTATGACACCTGCCACTGCCg > 1:1851549/1‑93 (MQ=255)
ctaACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGt > 1:1274796/1‑93 (MQ=255)
ctaACAGAGCAGGGACGATCACTGCAAGAATATTGCGCTTCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGt < 2:144699/93‑1 (MQ=255)
taACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTc > 2:848541/1‑93 (MQ=255)
taACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTc > 1:1415661/1‑93 (MQ=255)
aCAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCaa > 1:2068828/1‑93 (MQ=255)
agagCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATa < 1:6257826/93‑1 (MQ=255)
gagCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATaa > 2:5984327/1‑93 (MQ=255)
gagCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATaa < 2:4966345/93‑1 (MQ=255)
agCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAg < 1:5781184/93‑1 (MQ=255)
agCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAg < 2:1522901/93‑1 (MQ=255)
gCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGt < 2:3439893/93‑1 (MQ=255)
cAGGGACGATCACTGCCAGAATATTGCGCTTCATGATTATTTATTACCCTCATG‑GTTTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGtt < 1:4143158/93‑1 (MQ=255)
aGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTc < 2:4794045/93‑1 (MQ=255)
aGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTc < 1:3150666/93‑1 (MQ=255)
gggACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCt > 2:3840586/1‑93 (MQ=255)
gACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGt > 2:932991/1‑93 (MQ=255)
aCGATCCCTGCCAGAATATTGCGCTTCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTc < 2:3564488/93‑1 (MQ=255)
cGATCACTGCCATAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCa > 1:3413646/1‑93 (MQ=255)
aTCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAAt < 2:1104881/93‑1 (MQ=255)
aTCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAAt < 1:4857214/93‑1 (MQ=255)
aTCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAAt < 2:4300633/93‑1 (MQ=255)
aTCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGACACTGCCGTCAATAAGTTCTGTCAAt > 1:2812552/1‑93 (MQ=255)
aCTGCCAGAATATTGCGCTTCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATaaa < 2:1212246/93‑1 (MQ=255)
cTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATaaaa < 1:4199264/93‑1 (MQ=255)
tGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATaaaaa > 1:5903506/1‑93 (MQ=255)
cAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAAttt > 2:2089942/1‑93 (MQ=255)
aGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTa > 1:5199267/1‑93 (MQ=255)
aGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTa > 1:1375587/1‑93 (MQ=255)
aaTATTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACg > 1:3908342/1‑93 (MQ=255)
atatTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACgg < 2:5181062/93‑1 (MQ=255)
tatTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGa > 1:883180/1‑93 (MQ=255)
tatTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGa < 2:3368930/93‑1 (MQ=255)
tatTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGa > 1:1066172/1‑93 (MQ=255)
tatTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGa > 1:2933924/1‑93 (MQ=255)
atTGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGaa > 1:3713541/1‑93 (MQ=255)
ttGCGCTTCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAAc < 2:639150/93‑1 (MQ=255)
ttGCGCTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAAc > 2:1727568/1‑93 (MQ=255)
gcgcTTCATCATTATTTATTCCCCTAATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTTCGGAACTa < 2:6116791/93‑1 (MQ=255)
gcgcTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTa > 1:2780400/1‑93 (MQ=255)
gcgcTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTa < 2:3026764/93‑1 (MQ=255)
gcTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTAtt > 1:1518807/1‑93 (MQ=255)
cTTCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtg > 2:513973/1‑93 (MQ=255)
ttCATCATTATTTATTCCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtga < 1:3847293/93‑1 (MQ=255)
ttCATCATTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtga < 1:1207482/93‑1 (MQ=255)
tcatcaTTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtgat > 2:2788315/1‑93 (MQ=255)
catcatTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtgatg < 1:805632/93‑1 (MQ=255)
atcatTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtgatga < 1:3120543/93‑1 (MQ=255)
atcatTATTTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATtgatga < 2:2339118/93‑1 (MQ=255)
cgattattTATCCCCCTCATG‑GTTTTTTTTTATTACCCCTGCCACTGCCGTCAATAATTTCTGTCAATAAAAATTTACGGAACTATTGATgag < 1:4096567/91‑1 (MQ=255)
tattattTATTACCCTCAGGTT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATgaga < 1:898181/92‑1 (MQ=255)
attattTATTACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGagag > 2:4497496/1‑93 (MQ=255)
tatttattACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGtt > 2:3657680/1‑93 (MQ=255)
tatttattACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGtt < 2:781905/93‑1 (MQ=255)
tatttattACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGtt < 2:6229248/93‑1 (MQ=255)
atttattACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGttt < 1:1634542/93‑1 (MQ=255)
tttattCCCCTCATG‑GTTTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTg < 1:5342187/93‑1 (MQ=255)
tttattACCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTg > 2:6217062/1‑93 (MQ=255)
ttattaCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTgg < 1:2596916/93‑1 (MQ=255)
attaCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGgtg > 2:198271/1‑93 (MQ=255)
aCCCTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCt > 1:5058531/1‑93 (MQ=255)
cccTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCtt < 1:3643979/93‑1 (MQ=255)
cccTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCtt < 2:3149423/93‑1 (MQ=255)
cccTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCtt < 2:4195574/93‑1 (MQ=255)
ccTCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCttt > 1:3036341/1‑93 (MQ=255)
cTCATG‑GTTTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTa < 2:5398351/93‑1 (MQ=255)
tCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTAt > 2:4088796/1‑93 (MQ=255)
tCATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTAt < 1:428662/93‑1 (MQ=255)
ccATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTAt < 1:4771158/92‑1 (MQ=255)
cATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTAtg < 2:4155870/93‑1 (MQ=255)
cATG‑GTTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTAtg < 2:2475941/93‑1 (MQ=255)
|
GATTTCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATG > NC_000913/986131‑986310
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCAT > NC_000913/986139‑986323
|
CAGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑‑TTTTTTTTT > SRR4302533.5141487/1‑94 (MQ=60)
AGCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑‑TTTTTTTTta > SRR4302533.4650774/1‑92 (MQ=60)
GCGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑‑TTTTTTTTtat < SRR4302533.2270612/94‑4 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATG < SRR4302533.4964878/94‑1 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATG < SRR4302533.3365347/94‑1 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATG < SRR4302533.5609038/94‑1 (MQ=60)
CGTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATG > SRR4302533.5877536/1‑94 (MQ=60)
GTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGA > SRR4302533.33619/1‑94 (MQ=60)
GTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGA > SRR4302533.4007128/1‑94 (MQ=60)
GTTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGA < SRR4302533.313322/94‑1 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGAC < SRR4302533.2657707/94‑1 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGAC > SRR4302533.2819120/1‑94 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGAC > SRR4302533.2195159/1‑94 (MQ=60)
TTTGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGAC > SRR4302533.1778348/1‑94 (MQ=60)
TGCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACAC > SRR4302533.3564813/1‑94 (MQ=60)
GCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACC > SRR4302533.6060786/1‑94 (MQ=60)
GCAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACC < SRR4302533.4093023/94‑1 (MQ=60)
CAGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCT > SRR4302533.1753233/1‑94 (MQ=60)
AGTGCCTGTTACTACCAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTG < SRR4302533.4145198/94‑1 (MQ=60)
AGTGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTG > SRR4302533.1172174/1‑94 (MQ=60)
TGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCC < SRR4302533.3583405/94‑1 (MQ=60)
TGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCC < SRR4302533.573151/94‑1 (MQ=60)
TGCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCC > SRR4302533.2385027/1‑94 (MQ=60)
GCCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCA > SRR4302533.4819809/1‑94 (MQ=60)
CCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCAT > SRR4302533.3109171/1‑94 (MQ=60)
CTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACT < SRR4302533.1199674/94‑1 (MQ=60)
GCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGC < SRR4302533.2926341/94‑1 (MQ=60)
CTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCC < SRR4302533.1535991/94‑1 (MQ=60)
CTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑‑TTTTTTTTATGACACCTGCCACTGCCG > SRR4302533.1862837/1‑94 (MQ=60)
TACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCG > SRR4302533.3116658/1‑94 (MQ=60)
TACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCG < SRR4302533.4978242/94‑1 (MQ=60)
ACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGT > SRR4302533.1282462/1‑94 (MQ=60)
CTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTC > SRR4302533.1424224/1‑94 (MQ=60)
TAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCAGTCA < SRR4302533.1393560/94‑1 (MQ=60)
AACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAA > SRR4302533.2081571/1‑94 (MQ=60)
AGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAA < SRR4302533.6295248/94‑1 (MQ=60)
GAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCAGTGCCGTCAATAAG > SRR4302533.3624848/1‑94 (MQ=60)
GAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAG > SRR4302533.256996/1‑94 (MQ=60)
AGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGT < SRR4302533.5816100/94‑1 (MQ=60)
CAGGGACGATCACTGCCAGAATATTGCGCTTCATGATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTC < SRR4302533.4168276/94‑1 (MQ=60)
AGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCT < SRR4302533.3687843/94‑1 (MQ=60)
AGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCT < SRR4302533.3170039/94‑1 (MQ=60)
GACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTC > SRR4302533.1521159/1‑94 (MQ=60)
AGGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCA < SRR4302533.5277848/94‑1 (MQ=60)
ACGATCACTGCCATAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCA > SRR4302533.3434736/1‑94 (MQ=60)
CGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAA > SRR4302533.1959833/1‑94 (MQ=60)
GATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAAT < SRR4302533.1647979/94‑1 (MQ=60)
GATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGACACTGCCGTCAATAAGTTCTGTCAAT > SRR4302533.2829864/1‑94 (MQ=60)
gtccctgccaaaattttggcCTTCATCATTTTTTATTCCCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATA < SRR4302533.1248172/74‑1 (MQ=60)
ATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATA < SRR4302533.1321749/94‑1 (MQ=60)
ATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATA < SRR4302533.4886651/94‑1 (MQ=60)
TCACTGCTAGAATATTCCGCTTCATCATTATCTATTCCCTTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAA < SRR4302533.4710683/94‑1 (MQ=60)
TCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAA < SRR4302533.120705/94‑1 (MQ=60)
ACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAA > SRR4302533.552769/1‑94 (MQ=60)
ACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAA > SRR4302533.4194696/1‑94 (MQ=60)
CTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAA > SRR4302533.5939159/1‑94 (MQ=60)
CTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAA < SRR4302533.4224677/94‑1 (MQ=60)
TGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAAT > SRR4302533.894940/1‑94 (MQ=60)
TGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAAT < SRR4302533.5672080/94‑1 (MQ=60)
GCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATT < SRR4302533.436061/94‑1 (MQ=60)
CAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTA > SRR4302533.3921408/1‑94 (MQ=60)
CAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTA > SRR4302533.5230615/1‑94 (MQ=60)
CAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTA > SRR4302533.5950200/1‑94 (MQ=60)
CAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTA > SRR4302533.1383864/1‑94 (MQ=60)
AGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTAC > SRR4302533.2767697/1‑94 (MQ=60)
AGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTAC > SRR4302533.1842089/1‑94 (MQ=60)
GAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACG > SRR4302533.3932211/1‑94 (MQ=60)
GAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACG > SRR4302533.3155242/1‑94 (MQ=60)
GAATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACG < SRR4302533.4264124/94‑1 (MQ=60)
ATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGA > SRR4302533.1072435/1‑94 (MQ=60)
ATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGA > SRR4302533.2997744/1‑94 (MQ=60)
ATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGA > SRR4302533.2951863/1‑94 (MQ=60)
ATATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGA > SRR4302533.888367/1‑94 (MQ=60)
TATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAA > SRR4302533.97573/1‑94 (MQ=60)
TATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAA > SRR4302533.3736342/1‑94 (MQ=60)
ATTGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAAC < SRR4302533.493352/94‑1 (MQ=60)
TTGCGCTTCATCATTATTTATTCCCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACT < SRR4302533.2337161/94‑1 (MQ=60)
TGCGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTA > SRR4302533.2797480/1‑94 (MQ=60)
CGCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATT > SRR4302533.1527949/1‑94 (MQ=60)
CCTTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTG < SRR4302533.655107/94‑1 (MQ=60)
TTCATCATTATTTATTCCCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGAT < SRR4302533.3870786/94‑1 (MQ=60)
TTCATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGAT < SRR4302533.1214729/94‑1 (MQ=60)
CATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGA < SRR4302533.810366/94‑1 (MQ=60)
ATCATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAG < SRR4302533.3139733/94‑1 (MQ=60)
cgATTATTTATCCCCCTCATG‑GT‑TTTTTTTTATTACCCCTGCCACTGCCGTCAATAATTTCTGTCAATAAAAATTTACGGAACTATTGATGAGA < SRR4302533.4121504/92‑1 (MQ=60)
TATTATTTATTACCCTCA‑G‑GTTTTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAG < SRR4302533.903451/94‑1 (MQ=60)
ATTATTTATTACCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGT < SRR4302533.5186861/94‑1 (MQ=60)
TATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTT < SRR4302533.3838599/94‑1 (MQ=60)
TATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTT > SRR4302533.3086267/1‑94 (MQ=60)
tnnnnnntnnnncncnngtnnntnnTTNATNANACCTGNNANNNNCGTCAATAAGTNCNGTCAATANANANNTACGGAACTATTGATGAGAGTT < SRR4302533.578306/69‑1 (MQ=42)
ATTTATTCCCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTG < SRR4302533.1095374/94‑1 (MQ=60)
ATTTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTG < SRR4302533.1644443/94‑1 (MQ=60)
TTTATTCCCCTCATG‑GT‑TTTTTTTTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGG < SRR4302533.5374224/94‑1 (MQ=60)
ttttattcccctcatgttTTTTTTTTATACCACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTG < SRR4302533.5421027/76‑1 (MQ=60)
TTATTACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGT < SRR4302533.2612874/94‑1 (MQ=60)
TTATTACCCCCATGTT‑‑TTTTTTTTATGCCGCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGT < SRR4302533.947457/94‑1 (MQ=60)
TACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCT > SRR4302533.5089098/1‑94 (MQ=60)
ACCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTT < SRR4302533.6234071/94‑1 (MQ=60)
CCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTT > SRR4302533.3054920/1‑94 (MQ=60)
CCCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTT < SRR4302533.3666384/94‑1 (MQ=60)
CCTCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTA > SRR4302533.4177102/1‑94 (MQ=60)
TCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATG < SRR4302533.881757/94‑1 (MQ=60)
TCATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATG < SRR4302533.431218/94‑1 (MQ=60)
tcatgttTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATG < SRR4302533.295883/87‑1 (MQ=60)
ccatggtTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATG < SRR4302533.4800074/87‑1 (MQ=60)
ATG‑GT‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTG > SRR4302533.3807962/1‑94 (MQ=60)
atgttTTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTG < SRR4302533.437996/89‑1 (MQ=60)
TTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCA < SRR4302533.3232921/94‑1 (MQ=60)
TTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAG < SRR4302533.6070099/94‑1 (MQ=60)
TTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCA < SRR4302533.1727043/94‑1 (MQ=60)
TTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCA < SRR4302533.5692686/94‑1 (MQ=60)
TTATGACCCCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCAT < SRR4302533.397072/94‑1 (MQ=60)
TTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCAT > SRR4302533.871885/1‑94 (MQ=60)
TTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCAT < SRR4302533.3383133/94‑1 (MQ=60)
|
CAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATG‑G‑‑TTTTTTTTATGACACCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCAT > NC_000913/986139‑986323
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
