Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	998,060	A→G	V116V (GTA→GTG)	ycbR →	putative chaperone

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	998,060	0	A	G	100.0%	732.6 / NA	228	V116V (GTA→GTG)	ycbR	putative chaperone
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (131/97); total (131/97)

Only 100 of 229 total aligned reads displayed.

GCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAA  >  NC_000913/997970‑998149

  tGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCggg                                                                                       >  2:2800304/1‑93 (MQ=255)

   gAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGc                                                                                      >  1:3863158/1‑93 (MQ=255)

     aTCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAg                                                                                    <  1:3264378/93‑1 (MQ=255)

     aTCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAg                                                                                    >  2:857824/1‑93 (MQ=255)

       ccGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTc                                                                                  >  2:2010771/1‑93 (MQ=255)

          gCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCt                                                                               >  1:2048852/1‑93 (MQ=255)

           cAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCtt                                                                              >  2:4252079/1‑93 (MQ=255)

           cAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCtt                                                                              >  2:1311893/1‑93 (MQ=255)

            aaaTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTc                                                                             >  2:1701221/1‑93 (MQ=255)

            aaaTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTc                                                                             <  1:5594208/93‑1 (MQ=255)

             aaTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTca                                                                            <  2:5830034/93‑1 (MQ=255)

              aTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaa                                                                           <  1:2332082/93‑1 (MQ=255)

              aTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaa                                                                           <  1:2401241/93‑1 (MQ=255)

              aTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaa                                                                           <  1:5304618/93‑1 (MQ=255)

              aTGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaa                                                                           >  1:1016992/1‑93 (MQ=255)

               tGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaac                                                                          <  2:3680730/93‑1 (MQ=255)

               tGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaac                                                                          <  2:1302555/93‑1 (MQ=255)

               tGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaac                                                                          >  1:877385/1‑93 (MQ=255)

                gagaATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAACCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaaca                                                                         <  2:3715936/93‑1 (MQ=255)

                 agaATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTcaacaa                                                                        >  1:6130810/1‑93 (MQ=255)

                 agaATCTGTTACGCATGATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTCCTTCACTAGCGTGCGGGCAGTCCCTTcaacaa                                                                        <  2:1424565/93‑1 (MQ=255)

                  gaATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCaacaac                                                                       <  2:4819421/93‑1 (MQ=255)

                  gaATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCaacaac                                                                       <  2:1023469/93‑1 (MQ=255)

                   aaTCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACg                                                                      <  1:6183395/93‑1 (MQ=255)

                   aaTCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACg                                                                      >  1:1696270/1‑93 (MQ=255)

                    aTCTGTTACGCATTGTGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGa                                                                     <  2:4398122/93‑1 (MQ=255)

                      cTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAg                                                                   <  1:2646204/93‑1 (MQ=255)

                       tGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGc                                                                  >  2:2879467/1‑93 (MQ=255)

                       tGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGc                                                                  <  1:3786578/93‑1 (MQ=255)

                          tACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGa                                                               <  1:667462/93‑1 (MQ=255)

                          tACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGa                                                               >  1:5830110/1‑93 (MQ=255)

                           aCGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGaa                                                              >  2:3978585/1‑93 (MQ=255)

                           aCGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGaa                                                              <  2:2788480/93‑1 (MQ=255)

                            cGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGaaa                                                             >  1:4334567/1‑93 (MQ=255)

                            cGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGaaa                                                             <  2:4722134/93‑1 (MQ=255)

                             gCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAag                                                            <  1:2549017/93‑1 (MQ=255)

                             gCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAag                                                            <  1:5533996/93‑1 (MQ=255)

                              cATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAaga                                                           >  2:451553/1‑93 (MQ=255)

                               aTTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAagag                                                          >  1:5176827/1‑93 (MQ=255)

                                ttATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAgg                                                         >  1:4770485/1‑93 (MQ=255)

                                ttATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAgg                                                         >  1:1002956/1‑93 (MQ=255)

                                 tATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAggg                                                        <  2:5562560/93‑1 (MQ=255)

                                 tATGTACAGTGGAGCGCCGTTGGCGAAAGACAGAGAACCCCTGTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAggg                                                        <  2:1903193/93‑1 (MQ=255)

                                  aTGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGa                                                       <  1:1396386/93‑1 (MQ=255)

                                  aTGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGa                                                       >  1:3092/1‑93 (MQ=255)

                                    gTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGaaa                                                     <  1:1496027/93‑1 (MQ=255)

                                        aTTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATAcc                                                 >  2:1920571/1‑93 (MQ=255)

                                        aTTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATAcc                                                 <  1:4728445/93‑1 (MQ=255)

                                         ttGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATAccc                                                >  2:5029559/1‑93 (MQ=255)

                                         ttGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATAcac                                                >  1:454078/1‑91 (MQ=255)

                                          tGGAGCGCCGTTGGCGAAAGACAGAGAAGCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCt                                               <  1:4236396/93‑1 (MQ=255)

                                            gAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGa                                             <  2:6107578/93‑1 (MQ=255)

                                             aGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGaa                                            <  2:3173114/93‑1 (MQ=255)

                                                 ccGTTGACGAAAGACAGAGAAACCCTGTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGAtt                                        <  2:5993995/93‑1 (MQ=255)

                                                  cGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTg                                       >  2:2216230/1‑93 (MQ=255)

                                                  cGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTg                                       <  1:4991704/93‑1 (MQ=255)

                                                   gTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGc                                      >  1:3581997/1‑93 (MQ=255)

                                                   gTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGc                                      >  1:1137838/1‑93 (MQ=255)

                                                   gTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGc                                      >  1:5815033/1‑93 (MQ=255)

                                                   gTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGc                                      >  2:2553502/1‑93 (MQ=255)

                                                    ttGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGcc                                     <  1:6134913/93‑1 (MQ=255)

                                                    ttGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGcc                                     <  1:3341779/93‑1 (MQ=255)

                                                       gCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCcaca                                  >  1:5791100/1‑93 (MQ=255)

                                                         gAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCcacaca                                >  2:3808113/1‑93 (MQ=255)

                                                           aaGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACaaa                              <  2:3060932/93‑1 (MQ=255)

                                                           aaGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACaaa                              >  2:2165030/1‑93 (MQ=255)

                                                           aaGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACaaa                              <  2:1518471/93‑1 (MQ=255)

                                                            aGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAg                             >  2:343303/1‑93 (MQ=255)

                                                            aGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAg                             >  2:2423273/1‑93 (MQ=255)

                                                            aGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAg                             <  1:3983909/93‑1 (MQ=255)

                                                             gACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGc                            >  1:485038/1‑93 (MQ=255)

                                                               cAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGt                          <  1:4568735/93‑1 (MQ=255)

                                                               cAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGt                          <  1:318689/93‑1 (MQ=255)

                                                                agagAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGtc                         <  2:3639391/93‑1 (MQ=255)

                                                                agagAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGtc                         <  1:3158784/93‑1 (MQ=255)

                                                                   gaAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGtcatc                      >  2:774057/1‑93 (MQ=255)

                                                                   gaAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGtcatc                      >  1:4113652/1‑93 (MQ=255)

                                                                    aaaCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGtcatca                     >  1:777646/1‑93 (MQ=255)

                                                                    aaaCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGtcatca                     >  2:622594/1‑93 (MQ=255)

                                                                     aaCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCaa                    >  1:6062582/1‑93 (MQ=255)

                                                                      aCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCaaa                   >  1:1113911/1‑93 (MQ=255)

                                                                       cccTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAAc                  >  1:3515517/1‑93 (MQ=255)

                                                                        ccTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACt                 >  1:5882787/1‑93 (MQ=255)

                                                                         cTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACtt                <  1:177095/93‑1 (MQ=255)

                                                                         cTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACtt                >  1:2133315/1‑93 (MQ=255)

                                                                         cTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACtt                >  1:2362756/1‑93 (MQ=255)

                                                                         cTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACtt                >  1:2828559/1‑93 (MQ=255)

                                                                          ttttCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACttt               >  1:5238783/1‑93 (MQ=255)

                                                                            ttcttcACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTc             <  1:2864636/93‑1 (MQ=255)

                                                                             tcttcACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCt            >  1:5039162/1‑93 (MQ=255)

                                                                             tcttcACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCt            <  1:5494990/93‑1 (MQ=255)

                                                                               ttcACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTgg          >  2:5600309/1‑93 (MQ=255)

                                                                                tcACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGc         >  1:1289519/1‑93 (MQ=255)

                                                                                 cACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCg        >  1:4499446/1‑93 (MQ=255)

                                                                                 cACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCg        >  2:2251633/1‑93 (MQ=255)

                                                                                 cACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCg        >  2:872840/1‑93 (MQ=255)

                                                                                  aCTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGa       >  2:4051695/1‑93 (MQ=255)

                                                                                   cTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGAc      <  2:6178441/93‑1 (MQ=255)

                                                                                       cGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCaaa  >  2:5068042/1‑93 (MQ=255)

                                                                                       cGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCaaa  >  2:1051469/1‑93 (MQ=255)

GCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAA  >  NC_000913/997970‑998149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGT  >  NC_000913/997967‑998153

TGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTG                                                                                               >  SRR4302533.5793999/1‑94 (MQ=60)

 GTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGC                                                                                              >  SRR4302533.2059804/1‑94 (MQ=60)

 GTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGAGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGC                                                                                              >  SRR4302533.1122922/1‑94 (MQ=60)

  TGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCG                                                                                             <  SRR4302533.2061632/94‑1 (MQ=60)

  TGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCG                                                                                             >  SRR4302533.1205513/1‑94 (MQ=60)

  TGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCG                                                                                             <  SRR4302533.3723049/94‑1 (MQ=60)

    CTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGG                                                                                           >  SRR4302533.2072210/1‑94 (MQ=60)

     TGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGC                                                                                          >  SRR4302533.5486031/1‑94 (MQ=60)

     TGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGC                                                                                          >  SRR4302533.5225929/1‑94 (MQ=60)

     TGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGC                                                                                          >  SRR4302533.3010501/1‑94 (MQ=60)

     TGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGC                                                                                          >  SRR4302533.3886738/1‑94 (MQ=60)

       AATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAG                                                                                        >  SRR4302533.4585547/1‑94 (MQ=60)

       AATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAG                                                                                        <  SRR4302533.11793/94‑1 (MQ=60)

       AATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAG                                                                                        <  SRR4302533.5832419/94‑1 (MQ=60)

        ATCCGGCAAATGAGAATCTGTTACGCATTATGTAGATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGT                                                                                       >  SRR4302533.6178649/1‑94 (MQ=60)

        ATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGT                                                                                       <  SRR4302533.3284515/94‑1 (MQ=60)

          CCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCC                                                                                     <  SRR4302533.3130687/94‑1 (MQ=60)

           CGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCC                                                                                    >  SRR4302533.4643082/1‑94 (MQ=60)

           CGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCC                                                                                    >  SRR4302533.4367826/1‑94 (MQ=60)

            GGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCT                                                                                   >  SRR4302533.5157145/1‑94 (MQ=60)

            GGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCT                                                                                   >  SRR4302533.2061486/1‑94 (MQ=60)

              CAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTC                                                                                 >  SRR4302533.3888204/1‑94 (MQ=60)

               AAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCA                                                                                <  SRR4302533.5628003/94‑1 (MQ=60)

               AAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCA                                                                                >  SRR4302533.4077932/1‑94 (MQ=60)

                AATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAA                                                                               >  SRR4302533.1022970/1‑94 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              <  SRR4302533.5336405/94‑1 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              <  SRR4302533.6195354/94‑1 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              >  SRR4302533.882537/1‑94 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              >  SRR4302533.195861/1‑94 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              >  SRR4302533.2529232/1‑94 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              <  SRR4302533.2346521/94‑1 (MQ=60)

                 ATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAAC                                                                              <  SRR4302533.2416070/94‑1 (MQ=60)

                   GAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAA                                                                            >  SRR4302533.6167752/1‑94 (MQ=60)

                   GAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAA                                                                            >  SRR4302533.2500172/1‑94 (MQ=60)

                    AGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAAC                                                                           <  SRR4302533.1105926/94‑1 (MQ=60)

                    AGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAAC                                                                           >  SRR4302533.739650/1‑94 (MQ=60)

                     GAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACG                                                                          >  SRR4302533.4553533/1‑94 (MQ=60)

                     GAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACG                                                                          >  SRR4302533.1706544/1‑94 (MQ=60)

                     GAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACG                                                                          <  SRR4302533.6100062/94‑1 (MQ=60)

                      AATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGA                                                                         <  SRR4302533.6220521/94‑1 (MQ=60)

                       ATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAA                                                                        <  SRR4302533.4995803/94‑1 (MQ=60)

                        TCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCCACAACGAAG                                                                       >  SRR4302533.5034058/1‑94 (MQ=60)

                        TCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAG                                                                       >  SRR4302533.4794697/1‑94 (MQ=60)

                        TCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAG                                                                       <  SRR4302533.5859301/94‑1 (MQ=60)

                         CTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGC                                                                      <  SRR4302533.2662464/94‑1 (MQ=60)

                         CTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGC                                                                      >  SRR4302533.3235769/1‑94 (MQ=60)

                          TGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCG                                                                     <  SRR4302533.3809762/94‑1 (MQ=60)

                            TTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGA                                                                   >  SRR4302533.5865342/1‑94 (MQ=60)

                            TTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGA                                                                   <  SRR4302533.2872312/94‑1 (MQ=60)

                             TACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAA                                                                  <  SRR4302533.671405/94‑1 (MQ=60)

                              ACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAA                                                                 >  SRR4302533.4360685/1‑94 (MQ=60)

                                GCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGA                                                               <  SRR4302533.2564709/94‑1 (MQ=60)

                                GCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGA                                                               <  SRR4302533.5567406/94‑1 (MQ=60)

                                 CATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAG                                                              <  SRR4302533.5590845/94‑1 (MQ=60)

                                 CATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAG                                                              <  SRR4302533.5545953/94‑1 (MQ=60)

                                 CATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAG                                                              >  SRR4302533.5208092/1‑94 (MQ=60)

                                  ATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGG                                                             >  SRR4302533.4799400/1‑94 (MQ=60)

                                  ATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGG                                                             >  SRR4302533.1008818/1‑94 (MQ=60)

                                    TATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGA                                                           >  SRR4302533.3117/1‑94 (MQ=60)

                                    TATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGA                                                           >  SRR4302533.3272446/1‑94 (MQ=60)

                                     ATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAA                                                          <  SRR4302533.1404802/94‑1 (MQ=60)

                                       GTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAAT                                                        <  SRR4302533.1505041/94‑1 (MQ=60)

                                        TACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATA                                                       >  SRR4302533.1127114/1‑94 (MQ=60)

                                        TACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATA                                                       >  SRR4302533.5028626/1‑94 (MQ=60)

                                         ACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATAC                                                      <  SRR4302533.5984599/94‑1 (MQ=60)

                                          CATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACC                                                     >  SRR4302533.5953290/1‑94 (MQ=60)

                                          CATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACC                                                     <  SRR4302533.343816/94‑1 (MQ=60)

                                           aagtcaagtCCGTTGTCGAAACACAGAGAAACCCTTTGCTTCACTAGCGTGCGCTCAGTCCCTTCAACAACGAAGCGTAAAGAGGGAAATACCC                                                    <  SRR4302533.4757112/85‑1 (MQ=60)

                                           ATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCC                                                    >  SRR4302533.5914227/1‑94 (MQ=60)

                                           ATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCC                                                    <  SRR4302533.4757111/94‑1 (MQ=60)

                                           ATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACAC                                                    >  SRR4302533.456793/1‑94 (MQ=60)

                                             TGGAGCGCCGTTGGCGAAAGACAGAGAAGCCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTG                                                  <  SRR4302533.4261987/94‑1 (MQ=60)

                                             TGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTG                                                  <  SRR4302533.3085468/94‑1 (MQ=60)

                                              GGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGA                                                 <  SRR4302533.2367316/94‑1 (MQ=60)

                                               GAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAA                                                <  SRR4302533.4843109/94‑1 (MQ=60)

                                                AGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAG                                               >  SRR4302533.2813602/1‑94 (MQ=60)

                                                AGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAG                                               >  SRR4302533.4029844/1‑94 (MQ=60)

                                                AGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAG                                               <  SRR4302533.6240524/94‑1 (MQ=60)

                                                  CGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGAT                                             <  SRR4302533.3791223/94‑1 (MQ=60)

                                                   GCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTGCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATT                                            >  SRR4302533.6170049/1‑94 (MQ=60)

                                                     CGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGC                                          <  SRR4302533.5021966/94‑1 (MQ=60)

                                                     CGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGC                                          >  SRR4302533.1144606/1‑94 (MQ=60)

                                                     CGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGC                                          >  SRR4302533.5850154/1‑94 (MQ=60)

                                                     CGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGC                                          >  SRR4302533.3604061/1‑94 (MQ=60)

                                                     CGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGC                                          >  SRR4302533.3542922/1‑94 (MQ=60)

                                                      GTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCC                                         >  SRR4302533.1596515/1‑94 (MQ=60)

                                                       TTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCA                                        <  SRR4302533.6171878/94‑1 (MQ=60)

                                                       TTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCA                                        <  SRR4302533.3362435/94‑1 (MQ=60)

                                                         GGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACA                                      >  SRR4302533.5826087/1‑94 (MQ=60)

                                                            GAAAGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAA                                   >  SRR4302533.92882/1‑94 (MQ=60)

                                                              AANANNNNGAAACCCTTTTCTNNNCTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAG                                 <  SRR4302533.5487766/94‑1 (MQ=60)

                                                               AGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGC                                >  SRR4302533.487936/1‑94 (MQ=60)

                                                               AGACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGC                                <  SRR4302533.4008167/94‑1 (MQ=60)

                                                                GACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCG                               <  SRR4302533.5687138/94‑1 (MQ=60)

                                                                GACAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCG                               <  SRR4302533.2259998/94‑1 (MQ=60)

                                                                  CAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTC                             <  SRR4302533.4596425/94‑1 (MQ=60)

                                                                  CAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTC                             <  SRR4302533.2599903/94‑1 (MQ=60)

                                                                  CAGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTC                             <  SRR4302533.320644/94‑1 (MQ=60)

                                                                   AGAGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCA                            <  SRR4302533.3178223/94‑1 (MQ=60)

                                                                     AGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATC                          >  SRR4302533.4138652/1‑94 (MQ=60)

                                                                     AGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATC                          <  SRR4302533.3183264/94‑1 (MQ=60)

                                                                     AGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATC                          >  SRR4302533.5374182/1‑94 (MQ=60)

                                                                     AGAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATC                          <  SRR4302533.5280155/94‑1 (MQ=60)

                                                                      GAAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCA                         >  SRR4302533.782222/1‑94 (MQ=60)

                                                                       AAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAA                        >  SRR4302533.1553806/1‑94 (MQ=60)

                                                                       AAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAA                        >  SRR4302533.6099284/1‑94 (MQ=60)

                                                                       AAACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAA                        >  SRR4302533.5752347/1‑94 (MQ=60)

                                                                        AACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAA                       >  SRR4302533.1120515/1‑94 (MQ=60)

                                                                        AACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACACTGAAGATTGCCACACAAAGCGTCATCAAA                       >  SRR4302533.2399410/1‑94 (MQ=60)

                                                                         ACCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAAC                      >  SRR4302533.3537183/1‑94 (MQ=60)

                                                                          CCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACT                     >  SRR4302533.5918337/1‑94 (MQ=60)

                                                                          CCCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACT                     >  SRR4302533.4333781/1‑94 (MQ=60)

                                                                           CCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTT                    >  SRR4302533.2377375/1‑94 (MQ=60)

                                                                           CCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTT                    >  SRR4302533.2845961/1‑94 (MQ=60)

                                                                           CCTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTT                    >  SRR4302533.2146471/1‑94 (MQ=60)

                                                                            CTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTT                   <  SRR4302533.178205/94‑1 (MQ=60)

                                                                            CTTTTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTT                   >  SRR4302533.5270282/1‑94 (MQ=60)

                                                                               TTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCT                <  SRR4302533.45404/94‑1 (MQ=60)

                                                                               TTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCT                <  SRR4302533.2882257/94‑1 (MQ=60)

                                                                               TTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCT                >  SRR4302533.5069672/1‑94 (MQ=60)

                                                                               TTCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCT                >  SRR4302533.4258745/1‑94 (MQ=60)

                                                                                TCTTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTG               <  SRR4302533.5528137/94‑1 (MQ=60)

                                                                                  TTCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGC             >  SRR4302533.1297281/1‑94 (MQ=60)

                                                                                   TCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCG            >  SRR4302533.4788637/1‑94 (MQ=60)

                                                                                   TCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCG            >  SRR4302533.87232/1‑94 (MQ=60)

                                                                                   TCACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCG            >  SRR4302533.4526693/1‑94 (MQ=60)

                                                                                    CACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGCAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGC           >  SRR4302533.1488315/1‑94 (MQ=60)

                                                                                    CACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGA           >  SRR4302533.1022134/1‑94 (MQ=60)

                                                                                    CACTAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGA           >  SRR4302533.3836481/1‑94 (MQ=60)

                                                                                       TAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGATATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCA        <  SRR4302533.3632531/94‑1 (MQ=60)

                                                                                       TAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCA        >  SRR4302533.221325/1‑94 (MQ=60)

                                                                                       TAGCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCA        >  SRR4302533.130110/1‑94 (MQ=60)

                                                                                         GCGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAA      <  SRR4302533.3352050/94‑1 (MQ=60)

                                                                                          CGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAA     >  SRR4302533.2133595/1‑94 (MQ=60)

                                                                                          CGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAA     <  SRR4302533.1729936/94‑1 (MQ=60)

                                                                                          CGTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAA     >  SRR4302533.2342661/1‑94 (MQ=60)

                                                                                           GTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAG    <  SRR4302533.3915440/94‑1 (MQ=60)

                                                                                           GTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAG    <  SRR4302533.1740210/94‑1 (MQ=60)

                                                                                           GTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAG    <  SRR4302533.1431473/94‑1 (MQ=60)

                                                                                           GTGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAG    >  SRR4302533.362743/1‑94 (MQ=60)

                                                                                            TGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGG   <  SRR4302533.1299887/94‑1 (MQ=60)

                                                                                            TGCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGG   <  SRR4302533.2363509/94‑1 (MQ=60)

                                                                                             GCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGT  <  SRR4302533.5036265/94‑1 (MQ=60)

                                                                                             GCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGT  <  SRR4302533.616381/94‑1 (MQ=60)

                                                                                             GCGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGT  <  SRR4302533.2180347/94‑1 (MQ=60)

TGTGCTGAATCCGGCAAATGAGAATCTGTTACGCATTATGTACATTGGAGCGCCGTTGGCGAAAGACAGAGAAACCCTTTTCTTCACTAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGAAAGAGGGAAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGT  >  NC_000913/997967‑998153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`