Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,091,304	T→C	D70G (GAC→GGC)	ycdS ←	putative outer membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,091,304	0	T	C	100.0%	735.3 / NA	226	D70G (GAC→GGC)	ycdS	putative outer membrane protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (117/109); total (117/109)

Only 100 of 241 total aligned reads displayed.

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGTCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAT  >  NC_000913/1091214‑1091393

ccACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCa                                                                                         <  1:2627403/93‑1 (MQ=255)

 cACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAAccagccag                                                                                        >  1:4341597/1‑93 (MQ=255)

    gcgcTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCaa                                                                                     <  2:5870734/93‑1 (MQ=255)

     cgcTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAAt                                                                                    >  2:503483/1‑93 (MQ=255)

        tGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCTCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTg                                                                                 >  2:6173898/1‑93 (MQ=255)

        tGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTg                                                                                 >  2:2064406/1‑93 (MQ=255)

        tGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTg                                                                                 >  1:5280780/1‑93 (MQ=255)

         ggTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTgg                                                                                >  1:1278312/1‑93 (MQ=255)

         ggTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTgg                                                                                >  2:921495/1‑93 (MQ=255)

         ggTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTgg                                                                                <  2:850039/93‑1 (MQ=255)

          gTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGt                                                                               >  2:5279390/1‑93 (MQ=255)

            aaTTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTa                                                                             <  1:2094998/93‑1 (MQ=255)

            aaTTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTa                                                                             <  2:3361562/93‑1 (MQ=255)

             aTTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTAt                                                                            >  1:5501534/1‑93 (MQ=255)

              ttGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTAtt                                                                           >  1:3815667/1‑93 (MQ=255)

                  tgatgaCGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTg                                                                       >  2:4757409/1‑93 (MQ=255)

                  tgatgaCGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTg                                                                       >  2:1536174/1‑93 (MQ=255)

                   gatgaCGGTAGCGGTTGTAAACGGTAATACCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGa                                                                      <  1:1940945/93‑1 (MQ=255)

                   gatgaCGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCATCCAGCAATTTGGTTATTGCTGa                                                                      <  1:6101008/93‑1 (MQ=255)

                   gatgaCGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGa                                                                      <  2:1293102/93‑1 (MQ=255)

                   gatgaCGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGa                                                                      <  2:2562515/93‑1 (MQ=255)

                    atgaCGGTAGCTGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAg                                                                     <  1:106839/93‑1 (MQ=255)

                         ggTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTg                                                                >  1:3565890/1‑93 (MQ=255)

                         ggTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTg                                                                >  1:4077854/1‑93 (MQ=255)

                          gTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGa                                                               >  1:221720/1‑93 (MQ=255)

                           tAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAt                                                              >  2:5215820/1‑93 (MQ=255)

                           tAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAt                                                              >  1:1993921/1‑93 (MQ=255)

                            aGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAtt                                                             >  2:2802487/1‑93 (MQ=255)

                            aGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAtt                                                             <  2:5729085/93‑1 (MQ=255)

                             gCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAttt                                                            >  1:1163296/1‑93 (MQ=255)

                              cGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAtttt                                                           <  1:964254/93‑1 (MQ=255)

                               ggTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTa                                                          <  1:4851253/93‑1 (MQ=255)

                                gTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAg                                                         >  1:4592475/1‑93 (MQ=255)

                                 gttgaaaCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGt                                                        <  2:1063845/89‑1 (MQ=255)

                                  tGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTg                                                       <  1:325309/93‑1 (MQ=255)

                                   gTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGc                                                      >  1:4370356/1‑93 (MQ=255)

                                   gTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGc                                                      <  1:1895423/93‑1 (MQ=255)

                                     aaaCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCaa                                                    >  1:867709/1‑93 (MQ=255)

                                      aaCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCaaa                                                   >  1:2574668/1‑93 (MQ=255)

                                      aaCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCaaa                                                   >  1:2778790/1‑93 (MQ=255)

                                      aaCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCaaa                                                   >  1:2879806/1‑93 (MQ=255)

                                      aaCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCaaa                                                   >  1:4901762/1‑93 (MQ=255)

                                       aCGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAAc                                                  <  1:1395803/93‑1 (MQ=255)

                                          gTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCAt                                               >  1:569013/1‑93 (MQ=255)

                                           taataaCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCAta                                              >  1:5195058/1‑92 (MQ=255)

                                            aataaCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGa                                             <  2:4798247/93‑1 (MQ=255)

                                            aataaCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGa                                             <  2:2267690/93‑1 (MQ=255)

                                              taaCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACa                                           >  2:454801/1‑93 (MQ=255)

                                              taaCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACa                                           >  1:4198923/1‑93 (MQ=255)

                                               aaCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACaa                                          >  1:5817814/1‑93 (MQ=255)

                                                aCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACaaa                                         <  2:5344312/93‑1 (MQ=255)

                                                aCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACaaa                                         <  2:4642153/93‑1 (MQ=255)

                                                 ccTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAg                                        >  1:1791543/1‑93 (MQ=255)

                                                   tGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgct                                      <  2:178499/93‑1 (MQ=255)

                                                    gTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctg                                     <  1:2498649/93‑1 (MQ=255)

                                                    gTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctg                                     >  1:4872694/1‑93 (MQ=255)

                                                    gTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctg                                     >  2:1954117/1‑93 (MQ=255)

                                                     tttATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctgg                                    >  2:3192766/1‑93 (MQ=255)

                                                       tATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctggct                                  >  2:41779/1‑93 (MQ=255)

                                                       tATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctggct                                  >  2:686784/1‑93 (MQ=255)

                                                        aTCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctggctg                                 >  2:6011159/1‑93 (MQ=255)

                                                        aTCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAgctggctg                                 <  2:3074835/93‑1 (MQ=255)

                                                            tGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTa                             >  1:754971/1‑93 (MQ=255)

                                                            tGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTa                             <  2:3604976/93‑1 (MQ=255)

                                                            tGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTa                             <  1:1422156/93‑1 (MQ=255)

                                                             gCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAt                            >  1:3843821/1‑93 (MQ=255)

                                                               ccGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTa                          <  1:3697177/93‑1 (MQ=255)

                                                                 ggCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTAcc                        >  2:3443327/1‑93 (MQ=255)

                                                                  gCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTAccc                       >  1:2727926/1‑93 (MQ=255)

                                                                  gCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTAccc                       >  1:346990/1‑93 (MQ=255)

                                                                  gCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTAccc                       <  1:3911387/93‑1 (MQ=255)

                                                                  gCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTAccc                       <  2:4023108/93‑1 (MQ=255)

                                                                    ccATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCtt                     >  2:3937800/1‑93 (MQ=255)

                                                                    ccATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTATAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCtt                     <  1:4551564/93‑1 (MQ=255)

                                                                     cATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTg                    >  1:4770820/1‑93 (MQ=255)

                                                                     cATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTg                    >  2:529372/1‑93 (MQ=255)

                                                                      aTAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTga                   >  1:3122976/1‑92 (MQ=255)

                                                                       tAAGGCAATCTGTAACCAGCCAGTAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCg                  >  2:5073557/1‑93 (MQ=255)

                                                                       tAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCg                  >  2:2169542/1‑93 (MQ=255)

                                                                       tAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCg                  >  1:1527387/1‑93 (MQ=255)

                                                                        aaGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGa                 <  2:563724/93‑1 (MQ=255)

                                                                        aaGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGa                 <  1:6229775/93‑1 (MQ=255)

                                                                         aGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAg                <  2:48751/93‑1 (MQ=255)

                                                                         aGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAg                >  1:5333927/1‑93 (MQ=255)

                                                                          ggCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGc               <  1:3049494/93‑1 (MQ=255)

                                                                              aTCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCa           <  2:3246415/93‑1 (MQ=255)

                                                                               tCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTa                             <  1:2285086/74‑1 (MQ=255)

                                                                               tCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaa          >  1:5106437/1‑93 (MQ=255)

                                                                               tCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaa          >  2:2887215/1‑93 (MQ=255)

                                                                                cTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaat         <  1:6275808/93‑1 (MQ=255)

                                                                                 tGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaata        >  1:1845341/1‑93 (MQ=255)

                                                                                 tGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaata        <  1:5996520/93‑1 (MQ=255)

                                                                                  gTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaataa       >  2:1933636/1‑93 (MQ=255)

                                                                                  gTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaataa       >  2:2762725/1‑93 (MQ=255)

                                                                                   tAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCaataat      >  1:2041555/1‑93 (MQ=255)

                                                                                    aaCCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTCCCCTTGCGAGCTTCAATAATc     <  2:3706189/93‑1 (MQ=255)

                                                                                    aaCCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATc     >  1:2927592/1‑93 (MQ=255)

                                                                                      ccagccagCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCaa   >  1:4971954/1‑93 (MQ=255)

                                                                                       cagccagcAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAt  >  1:5949328/1‑93 (MQ=255)

                                                                                       cagccagcAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAt  >  2:888290/1‑93 (MQ=255)

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGTCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAT  >  NC_000913/1091214‑1091393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGTCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGCAT  >  NC_000913/1091214‑1091397

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAG                                                                                            <  SRR4302533.2643519/94‑1 (MQ=60)

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAG                                                                                            <  SRR4302533.2500220/94‑1 (MQ=60)

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAG                                                                                            >  SRR4302533.4367761/1‑94 (MQ=60)

 CACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGC                                                                                           >  SRR4302533.617148/1‑94 (MQ=60)

 CACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGC                                                                                           >  SRR4302533.81159/1‑94 (MQ=60)

  ACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCA                                                                                          >  SRR4302533.5311982/1‑94 (MQ=60)

  ACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCA                                                                                          <  SRR4302533.1987114/94‑1 (MQ=60)

  ACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCA                                                                                          <  SRR4302533.907956/94‑1 (MQ=60)

     CGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATT                                                                                       >  SRR4302533.2119654/1‑94 (MQ=60)

       CTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTG                                                                                     >  SRR4302533.5312423/1‑94 (MQ=60)

       CTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTG                                                                                     >  SRR4302533.1432/1‑94 (MQ=60)

       CTGATAATTGCTCATGACGTTAGCGGTTGTAAACGATAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTG                                                                                     <  SRR4302533.1403701/94‑1 (MQ=60)

        TGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGG                                                                                    >  SRR4302533.4879826/1‑94 (MQ=60)

        TGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGG                                                                                    <  SRR4302533.6147553/94‑1 (MQ=60)

        TGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGG                                                                                    >  SRR4302533.1285995/1‑94 (MQ=60)

         GGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGT                                                                                   <  SRR4302533.4189874/94‑1 (MQ=60)

           TAATTGCTGATGACTGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATATGGCAATCTGTAACCAGCCAGCAATTTGGTTA                                                                                 <  SRR4302533.5674690/94‑1 (MQ=60)

           TAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTA                                                                                 >  SRR4302533.4343127/1‑94 (MQ=60)

           TAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTA                                                                                 <  SRR4302533.2650932/94‑1 (MQ=60)

           TAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTA                                                                                 <  SRR4302533.4686127/94‑1 (MQ=60)

            AATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTAT                                                                                >  SRR4302533.5534722/1‑94 (MQ=60)

            AATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTAT                                                                                >  SRR4302533.5792185/1‑94 (MQ=60)

            AATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTAT                                                                                <  SRR4302533.2107898/94‑1 (MQ=60)

             ATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATT                                                                               >  SRR4302533.3838998/1‑94 (MQ=60)

              TTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTG                                                                              <  SRR4302533.1510009/94‑1 (MQ=60)

              TTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTG                                                                              <  SRR4302533.4696977/94‑1 (MQ=60)

              TTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTG                                                                              >  SRR4302533.4137528/1‑94 (MQ=60)

                  TGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGA                                                                          <  SRR4302533.3099937/94‑1 (MQ=60)

                  TGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAACGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGA                                                                          <  SRR4302533.2464262/94‑1 (MQ=60)

                   GATGACGGTAGCGGTTGTAAACGGTAATACCCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAG                                                                         <  SRR4302533.1952781/94‑1 (MQ=60)

                   GATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCATCCAGCAATTTGGTTATTGCTGAG                                                                         <  SRR4302533.6137847/94‑1 (MQ=60)

                    ATGACGGTAGCTGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGT                                                                        <  SRR4302533.107508/94‑1 (MQ=60)

                    ATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGT                                                                        >  SRR4302533.3328498/1‑94 (MQ=60)

                     TGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTG                                                                       <  SRR4302533.2725534/94‑1 (MQ=60)

                     TGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTG                                                                       >  SRR4302533.693072/1‑94 (MQ=60)

                      GACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGC                                                                      >  SRR4302533.3289517/1‑94 (MQ=60)

                        CGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTG                                                                    >  SRR4302533.4102678/1‑94 (MQ=60)

                        CGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTG                                                                    <  SRR4302533.502350/94‑1 (MQ=60)

                        CGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTG                                                                    >  SRR4302533.3587867/1‑94 (MQ=60)

                         GGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGA                                                                   >  SRR4302533.223108/1‑94 (MQ=60)

                         GGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGA                                                                   >  SRR4302533.1431633/1‑94 (MQ=60)

                         GGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGA                                                                   >  SRR4302533.1868628/1‑94 (MQ=60)

                          GTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAT                                                                  >  SRR4302533.2006152/1‑94 (MQ=60)

                          GTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGAT                                                                  <  SRR4302533.3639054/94‑1 (MQ=60)

                            AGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTT                                                                <  SRR4302533.2615101/94‑1 (MQ=60)

                            AGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTT                                                                >  SRR4302533.1170274/1‑94 (MQ=60)

                            AGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTT                                                                >  SRR4302533.3754808/1‑94 (MQ=60)

                              CGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTA                                                              <  SRR4302533.969916/94‑1 (MQ=60)

                               GGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCGCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAG                                                             <  SRR4302533.488586/94‑1 (MQ=60)

                               GGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAG                                                             <  SRR4302533.2206440/94‑1 (MQ=60)

                               GGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAG                                                             <  SRR4302533.4880652/94‑1 (MQ=60)

                               GGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAG                                                             >  SRR4302533.4620294/1‑94 (MQ=60)

                                GTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGT                                                            <  SRR4302533.2759913/94‑1 (MQ=60)

                                  TGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGC                                                          >  SRR4302533.4396740/1‑94 (MQ=60)

                                  TGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGC                                                          <  SRR4302533.4403450/94‑1 (MQ=60)

                                  TGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGC                                                          <  SRR4302533.327292/94‑1 (MQ=60)

                                   GTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCA                                                         <  SRR4302533.1906992/94‑1 (MQ=60)

                                    TAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAA                                                        >  SRR4302533.872793/1‑94 (MQ=60)

                                     AAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAA                                                       <  SRR4302533.5214278/94‑1 (MQ=60)

                                     AAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAA                                                       >  SRR4302533.2795860/1‑94 (MQ=60)

                                     AAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAA                                                       >  SRR4302533.4931464/1‑94 (MQ=60)

                                     AAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAA                                                       >  SRR4302533.2897523/1‑94 (MQ=60)

                                     AAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAA                                                       >  SRR4302533.2590507/1‑94 (MQ=60)

                                      AACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAAC                                                      <  SRR4302533.3591793/94‑1 (MQ=60)

                                       ACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACC                                                     <  SRR4302533.1404216/94‑1 (MQ=60)

                                        CGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCA                                                    >  SRR4302533.6023910/1‑94 (MQ=60)

                                         GGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCAT                                                   >  SRR4302533.572378/1‑94 (MQ=60)

                                          GTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATA                                                  >  SRR4302533.5226390/1‑94 (MQ=60)

                                             ATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACA                                               >  SRR4302533.4224334/1‑94 (MQ=60)

                                             ATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACA                                               >  SRR4302533.1235879/1‑94 (MQ=60)

                                             ATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACA                                               >  SRR4302533.459446/1‑94 (MQ=60)

                                              TAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAA                                              <  SRR4302533.1160756/94‑1 (MQ=60)

                                              TAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAA                                              >  SRR4302533.5852958/1‑94 (MQ=60)

                                              TAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAA                                              <  SRR4302533.5914633/94‑1 (MQ=60)

                                               AACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAA                                             <  SRR4302533.3890295/94‑1 (MQ=60)

                                               AACCTGTTTATCTTGCCCGGCACATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAA                                             >  SRR4302533.2024639/1‑94 (MQ=60)

                                                ACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAG                                            >  SRR4302533.3181660/1‑94 (MQ=60)

                                                ACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAG                                            <  SRR4302533.1616314/94‑1 (MQ=60)

                                                ACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAG                                            >  SRR4302533.1802439/1‑94 (MQ=60)

                                                  CTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCT                                          >  SRR4302533.3903671/1‑94 (MQ=60)

                                                  CTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCT                                          <  SRR4302533.3495913/94‑1 (MQ=60)

                                                  CTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCT                                          >  SRR4302533.6302564/1‑94 (MQ=60)

                                                   TGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTG                                         >  SRR4302533.4902219/1‑94 (MQ=60)

                                                    GTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGG                                        <  SRR4302533.2514064/94‑1 (MQ=60)

                                                      TTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCT                                      >  SRR4302533.1352971/1‑94 (MQ=60)

                                                      TTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTAGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCT                                      >  SRR4302533.4061736/1‑94 (MQ=60)

                                                       TATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTG                                     >  SRR4302533.255730/1‑94 (MQ=60)

                                                        ATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGA                                    >  SRR4302533.3051098/1‑94 (MQ=60)

                                                         TCTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAG                                   <  SRR4302533.4920534/94‑1 (MQ=60)

                                                          CTTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGT                                  >  SRR4302533.2261165/1‑94 (MQ=60)

                                                           TTGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTA                                 >  SRR4302533.759413/1‑94 (MQ=60)

                                                            tcttccgatctgctgtatATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAT                                <  SRR4302533.2299230/76‑1 (MQ=60)

                                                            TGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAT                                <  SRR4302533.6059305/94‑1 (MQ=60)

                                                            TGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAT                                >  SRR4302533.3867299/1‑94 (MQ=60)

                                                            TGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAT                                <  SRR4302533.2074329/94‑1 (MQ=60)

                                                            TGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAT                                <  SRR4302533.1430754/94‑1 (MQ=60)

                                                            TGCCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTAT                                <  SRR4302533.1923964/94‑1 (MQ=60)

                                                              CCCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTA                              >  SRR4302533.5352634/1‑94 (MQ=60)

                                                               CCGGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTAC                             <  SRR4302533.3719889/94‑1 (MQ=60)

                                                                 GGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCC                           >  SRR4302533.2744660/1‑94 (MQ=60)

                                                                 GGCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCC                           >  SRR4302533.349109/1‑94 (MQ=60)

                                                                  GCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCT                          <  SRR4302533.4373173/94‑1 (MQ=60)

                                                                  GCCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCT                          <  SRR4302533.3935274/94‑1 (MQ=60)

                                                                   CCCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTT                         >  SRR4302533.2851073/1‑94 (MQ=60)

                                                                    CCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTG                        <  SRR4302533.4534439/94‑1 (MQ=60)

                                                                    CCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTG                        >  SRR4302533.4799735/1‑94 (MQ=60)

                                                                    CCATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTATAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTG                        <  SRR4302533.4579167/94‑1 (MQ=60)

                                                                     CATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGC                       >  SRR4302533.6327545/1‑94 (MQ=60)

                                                                     CATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGA                       >  SRR4302533.3142176/1‑94 (MQ=60)

                                                                      ATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCG                      >  SRR4302533.1536580/1‑94 (MQ=60)

                                                                      ATAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCG                      >  SRR4302533.5245093/1‑94 (MQ=60)

                                                                       TAAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGA                     >  SRR4302533.5660632/1‑94 (MQ=60)

                                                                        AAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAG                    <  SRR4302533.6267088/94‑1 (MQ=60)

                                                                        AAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAG                    >  SRR4302533.5365896/1‑94 (MQ=60)

                                                                        AAGGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAG                    >  SRR4302533.1810212/1‑94 (MQ=60)

                                                                          GGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCT                  <  SRR4302533.1984658/94‑1 (MQ=60)

                                                                          GGCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCT                  <  SRR4302533.3068158/94‑1 (MQ=60)

                                                                           GCAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTT                 <  SRR4302533.3061816/94‑1 (MQ=60)

                                                                            CAATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTC                <  SRR4302533.1857372/94‑1 (MQ=60)

                                                                             AATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCA               >  SRR4302533.3865544/1‑94 (MQ=60)

                                                                              ATCTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAA              >  SRR4302533.5137286/1‑94 (MQ=60)

                                                                                CTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATA            <  SRR4302533.6313283/94‑1 (MQ=60)

                                                                                CTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATA            >  SRR4302533.5395671/1‑94 (MQ=60)

                                                                                CTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATA            <  SRR4302533.4945110/94‑1 (MQ=60)

                                                                                CTGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATA            >  SRR4302533.1856594/1‑94 (MQ=60)

                                                                                 TGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAA           <  SRR4302533.2822618/94‑1 (MQ=60)

                                                                                 TGTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAA           <  SRR4302533.6032840/94‑1 (MQ=60)

                                                                                  GTAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAAT          >  SRR4302533.2054136/1‑94 (MQ=60)

                                                                                   TAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATC         <  SRR4302533.980706/94‑1 (MQ=60)

                                                                                   TAACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATC         >  SRR4302533.2945505/1‑94 (MQ=60)

                                                                                    AACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCA        <  SRR4302533.294134/94‑1 (MQ=60)

                                                                                     ACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAA       <  SRR4302533.5871818/94‑1 (MQ=60)

                                                                                     ACCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAA       >  SRR4302533.5002101/1‑94 (MQ=60)

                                                                                      CCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAT      >  SRR4302533.5985309/1‑94 (MQ=60)

                                                                                      CCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAT      >  SRR4302533.5020737/1‑94 (MQ=60)

                                                                                      CCAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAAT      <  SRR4302533.4903720/94‑1 (MQ=60)

                                                                                       CAGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATG     >  SRR4302533.1562009/1‑94 (MQ=60)

                                                                                        AGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGC    <  SRR4302533.5819528/94‑1 (MQ=60)

                                                                                        AGCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGC    >  SRR4302533.4367203/1‑94 (MQ=60)

                                                                                         GCCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGCA   <  SRR4302533.4518948/94‑1 (MQ=60)

                                                                                          CCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGCAT  >  SRR4302533.2186147/1‑94 (MQ=60)

                                                                                          CCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGCAT  >  SRR4302533.5170293/1‑94 (MQ=60)

                                                                                          CCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGCAT  <  SRR4302533.824709/94‑1 (MQ=60)

CCACGCGCTGGTAATTGCTGATGACGGTAGCGGTTGTAAACGGTAATAACCTGTTTATCTTGCCCGGCCCATAAGGCAATCTGTAACCAGTCAGCAATTTGGTTATTGCTGAGTGCTGATTTTAGTGCAAACCATGACAAAGCTGGCTGAGTATTACCCTTGCGAGCTTCAATAATCAATGCAT  >  NC_000913/1091214‑1091397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`