Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,403	A→G	T203A (ACC→GCC)	flgE →	hook protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,403	0	A	G	100.0%	748.3 / NA	230	T203A (ACC→GCC)	flgE	hook protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/115); total (115/115)

Only 100 of 231 total aligned reads displayed.

AGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCT  >  NC_000913/1132313‑1132492

aGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGcc                                                                                         <  1:4818362/93‑1 (MQ=255)

 gCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCg                                                                                        >  2:4701729/1‑93 (MQ=255)

  cAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCgg                                                                                       <  2:5294155/93‑1 (MQ=255)

   aaTGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCggg                                                                                      >  1:1328479/1‑93 (MQ=255)

     tGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGa                                                                                    >  1:537545/1‑93 (MQ=255)

     tGCGAATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGa                                                                                    <  2:1551995/93‑1 (MQ=255)

       cGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGata                                                                                  <  1:3723409/93‑1 (MQ=255)

         gATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGataat                                                                                >  1:624116/1‑93 (MQ=255)

         gATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGataat                                                                                >  2:5873929/1‑93 (MQ=255)

         gATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGataaa                                                                                >  1:2571583/1‑92 (MQ=255)

           tAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGAtaataa                                                                              >  2:4216434/1‑93 (MQ=255)

            aGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAAc                                                                             <  1:1245809/93‑1 (MQ=255)

             gCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACt                                                                            <  2:6286871/93‑1 (MQ=255)

             gCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACt                                                                            >  2:3633576/1‑93 (MQ=255)

               tataACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTgg                                                                          <  1:2532414/93‑1 (MQ=255)

                ataACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGc                                                                         >  2:5176097/1‑93 (MQ=255)

                 taACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCa                                                                        >  2:2140652/1‑93 (MQ=255)

                  aaCAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAg                                                                       <  2:1264455/93‑1 (MQ=255)

                  aaCAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAg                                                                       <  2:4438138/93‑1 (MQ=255)

                     aaaaaaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGACGGGGATAATAACTGGCAGGTc                                                                    >  2:1803490/1‑93 (MQ=255)

                      aaaaaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATCATAACTGGCAGGTCt                                                                   >  2:2918573/1‑93 (MQ=255)

                      aaaaaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCt                                                                   >  2:1019899/1‑93 (MQ=255)

                      aaaaaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCt                                                                   >  1:1191143/1‑93 (MQ=255)

                        aaaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTac                                                                 <  1:864948/93‑1 (MQ=255)

                        aaaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTac                                                                 >  1:3854949/1‑93 (MQ=255)

                         aaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTaca                                                                <  1:2702558/93‑1 (MQ=255)

                         aaGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTaca                                                                <  1:2141681/93‑1 (MQ=255)

                           ggTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACAcc                                                              <  1:3230739/93‑1 (MQ=255)

                             ttCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCa                                                            <  2:4354433/93‑1 (MQ=255)

                              tCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAg                                                           <  1:3491416/93‑1 (MQ=255)

                              tCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAg                                                           <  1:4451449/93‑1 (MQ=255)

                                  tGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATa                                                       <  1:4197142/93‑1 (MQ=255)

                                  tGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATa                                                       >  2:4285050/1‑93 (MQ=255)

                                    aCTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGc                                                     >  1:5396095/1‑93 (MQ=255)

                                    aCTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGc                                                     >  2:5811015/1‑93 (MQ=255)

                                    aCTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGc                                                     >  2:1402118/1‑93 (MQ=255)

                                    aCTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGc                                                     >  1:2991322/1‑93 (MQ=255)

                                     cTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCa                                                    <  1:3133743/93‑1 (MQ=255)

                                     cTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGGGAGGGCCGGGGATAATAACTGGCAGGTCTACCCCCAGGATAGCa                                                    <  2:1608242/93‑1 (MQ=255)

                                      tGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAg                                                   >  1:5858132/1‑93 (MQ=255)

                                      tGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAg                                                   >  2:3286923/1‑93 (MQ=255)

                                       gTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGt                                                  >  2:5400630/1‑93 (MQ=255)

                                       gTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGt                                                  <  2:2856374/93‑1 (MQ=255)

                                        ttttCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTg                                                 >  1:5869789/1‑93 (MQ=255)

                                        ttttCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTg                                                 >  1:3054995/1‑93 (MQ=255)

                                         tttCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGa                                                <  1:223333/93‑1 (MQ=255)

                                         tttCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGa                                                <  1:3616487/93‑1 (MQ=255)

                                          ttCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGAt                                               <  2:6180944/93‑1 (MQ=255)

                                              aCAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCaa                                           <  2:6003910/93‑1 (MQ=255)

                                               cAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCaaa                                          >  2:2442284/1‑93 (MQ=255)

                                               cAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCaaa                                          >  2:978586/1‑93 (MQ=255)

                                               cAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCaaa                                          <  1:5133500/93‑1 (MQ=255)

                                                aGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCacac                                         >  2:5521325/1‑93 (MQ=255)

                                                aGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAAc                                         <  2:2987410/93‑1 (MQ=255)

                                                aGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAAc                                         <  2:1693947/93‑1 (MQ=255)

                                                aGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGGCTACACCCAGGATAGCAGTGATCCAAAc                                         >  1:4051541/1‑93 (MQ=255)

                                                 gTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACa                                        <  2:4013230/93‑1 (MQ=255)

                                                 gTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACa                                        >  1:476679/1‑93 (MQ=255)

                                                    aGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACTCAGGATAGCAGTGATCCAAACAGCa                                     <  1:1890299/93‑1 (MQ=255)

                                                     gggTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCAt                                    >  2:5257279/1‑93 (MQ=255)

                                                     gggTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCAt                                    >  1:4333378/1‑93 (MQ=255)

                                                     gggTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCAt                                    <  2:374353/93‑1 (MQ=255)

                                                       gTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTg                                  <  1:5768884/93‑1 (MQ=255)

                                                       gTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTg                                  <  2:807498/93‑1 (MQ=255)

                                                        tAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGc                                 <  2:6215836/93‑1 (MQ=255)

                                                        tAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGc                                 >  1:1575895/1‑93 (MQ=255)

                                                        tAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGc                                 <  2:709353/93‑1 (MQ=255)

                                                        tAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGc                                 >  2:3490714/1‑93 (MQ=255)

                                                        tAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGc                                 <  1:687711/93‑1 (MQ=255)

                                                         aaTGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCg                                <  2:3529547/93‑1 (MQ=255)

                                                         aaTGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCg                                >  1:777214/1‑93 (MQ=255)

                                                          aTGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGa                               >  1:4825380/1‑93 (MQ=255)

                                                             cTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGa                            <  2:4953845/93‑1 (MQ=255)

                                                              tgatgacatgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGAc                           >  2:5012274/3‑93 (MQ=255)

                                                               catgacatgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACa                          <  2:2178152/93‑1 (MQ=255)

                                                                  gacatgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCg                       >  2:235021/1‑93 (MQ=255)

                                                                   acatgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGa                      <  1:653823/93‑1 (MQ=255)

                                                                   acatgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGa                      <  1:6152829/93‑1 (MQ=255)

                                                                   acatgaGCGTCTACTTTGTGAAGGACGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAACATTGCGAAGACAGCGa                      >  2:2779551/1‑93 (MQ=255)

                                                                    catgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGac                     <  1:5108555/93‑1 (MQ=255)

                                                                     atgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGaca                    >  1:1305511/1‑93 (MQ=255)

                                                                     atgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGaca                    >  1:5476158/1‑93 (MQ=255)

                                                                      tgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGacaa                   <  1:5299168/93‑1 (MQ=255)

                                                                      tgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGacaa                   <  2:2609376/93‑1 (MQ=255)

                                                                      tgaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGacaa                   >  1:3471855/1‑93 (MQ=255)

                                                                       gaGCGTCTACTTTGTGAAGGCCGGTGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGacaac                  <  1:22018/93‑1 (MQ=255)

                                                                       gaGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGacaac                  <  2:5067412/93‑1 (MQ=255)

                                                                        aGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGacaaca                 >  1:4642800/1‑93 (MQ=255)

                                                                          cGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACt               <  2:2689175/93‑1 (MQ=255)

                                                                           gTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTg              >  1:6117633/1‑93 (MQ=255)

                                                                            tCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTgg             >  2:5097688/1‑93 (MQ=255)

                                                                            tCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTgg             >  2:4310466/1‑93 (MQ=255)

                                                                            tCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTgg             <  1:4382475/93‑1 (MQ=255)

                                                                              tACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGaa           >  1:2796942/1‑93 (MQ=255)

                                                                              tACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGaa           >  1:399255/1‑93 (MQ=255)

                                                                                cTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAAtt         >  1:1651821/1‑93 (MQ=255)

                                                                                  ttGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTa       >  1:2041136/1‑93 (MQ=255)

                                                                                  ttGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTa       <  1:4924851/93‑1 (MQ=255)

                                                                                       aaGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCt  <  1:2946277/93‑1 (MQ=255)

                                                                                       aaGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCt  <  1:3684205/93‑1 (MQ=255)

AGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCT  >  NC_000913/1132313‑1132492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTAAT  >  NC_000913/1132310‑1132495

GCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGG                                                                                              >  SRR4302533.4308982/1‑94 (MQ=60)

GCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGG                                                                                              >  SRR4302533.43460/1‑94 (MQ=60)

 CCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGC                                                                                             <  SRR4302533.2952695/94‑1 (MQ=60)

 CCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGC                                                                                             <  SRR4302533.2037601/94‑1 (MQ=60)

 CCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGC                                                                                             >  SRR4302533.5344285/1‑94 (MQ=60)

   AGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCG                                                                                           <  SRR4302533.4847566/94‑1 (MQ=60)

     CAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGG                                                                                         >  SRR4302533.1336451/1‑94 (MQ=60)

      AATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGG                                                                                        <  SRR4302533.1414854/94‑1 (MQ=60)

      AATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGG                                                                                        <  SRR4302533.680089/94‑1 (MQ=60)

       ATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGA                                                                                       <  SRR4302533.529806/94‑1 (MQ=60)

       ATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGA                                                                                       >  SRR4302533.540743/1‑94 (MQ=60)

        TGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGAT                                                                                      <  SRR4302533.1211566/94‑1 (MQ=60)

          CGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAA                                                                                    <  SRR4302533.3746254/94‑1 (MQ=60)

           GGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAAT                                                                                   >  SRR4302533.627778/1‑94 (MQ=60)

           GGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAAA                                                                                   >  SRR4302533.2587408/1‑94 (MQ=60)

            GATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATA                                                                                  >  SRR4302533.3003603/1‑94 (MQ=60)

             ATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGTCATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAA                                                                                 >  SRR4302533.2657636/1‑94 (MQ=60)

             ATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAA                                                                                 >  SRR4302533.4829350/1‑94 (MQ=60)

             ATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAA                                                                                 >  SRR4302533.3844743/1‑94 (MQ=60)

               AGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACT                                                                               <  SRR4302533.1659323/94‑1 (MQ=60)

               AGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACT                                                                               >  SRR4302533.584718/1‑94 (MQ=60)

               AGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACT                                                                               <  SRR4302533.365226/94‑1 (MQ=60)

               AGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACT                                                                               <  SRR4302533.1253246/94‑1 (MQ=60)

                  TATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGC                                                                            >  SRR4302533.2015636/1‑94 (MQ=60)

                  TATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGC                                                                            <  SRR4302533.2548003/94‑1 (MQ=60)

                   ATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCA                                                                           >  SRR4302533.6139268/1‑94 (MQ=60)

                   ATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCA                                                                           >  SRR4302533.2232505/1‑94 (MQ=60)

                    TAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAG                                                                          <  SRR4302533.3929/94‑1 (MQ=60)

                    TAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAG                                                                          >  SRR4302533.3056604/1‑94 (MQ=60)

                      ACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGT                                                                        >  SRR4302533.369797/1‑94 (MQ=60)

                      ACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGT                                                                        >  SRR4302533.5155480/1‑94 (MQ=60)

                        AAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCT                                                                      >  SRR4302533.1198300/1‑94 (MQ=60)

                          AAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTAC                                                                    >  SRR4302533.3878490/1‑94 (MQ=60)

                          AAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTAC                                                                    >  SRR4302533.4446539/1‑94 (MQ=60)

                           AAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACA                                                                   <  SRR4302533.870013/94‑1 (MQ=60)

                            AAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACAC                                                                  <  SRR4302533.2719135/94‑1 (MQ=60)

                            AAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACAC                                                                  <  SRR4302533.2154879/94‑1 (MQ=60)

                             AGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACC                                                                 >  SRR4302533.5603982/1‑94 (MQ=60)

                              GGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCC                                                                <  SRR4302533.3250654/94‑1 (MQ=60)

                                TTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAG                                                              >  SRR4302533.631600/1‑94 (MQ=60)

                                 TCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGG                                                             <  SRR4302533.3512949/94‑1 (MQ=60)

                                 TCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGG                                                             <  SRR4302533.4478362/94‑1 (MQ=60)

                                  CGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGA                                                            >  SRR4302533.4742859/1‑94 (MQ=60)

                                    GTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATA                                                          >  SRR4302533.5303423/1‑94 (MQ=60)

                                     TGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAG                                                         <  SRR4302533.4222551/94‑1 (MQ=60)

                                      GACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGC                                                        >  SRR4302533.5428518/1‑94 (MQ=60)

                                      GACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGC                                                        >  SRR4302533.3009616/1‑94 (MQ=60)

                                        CTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAG                                                      <  SRR4302533.3153012/94‑1 (MQ=60)

                                        CTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAG                                                      >  SRR4302533.5893547/1‑94 (MQ=60)

                                        CTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAG                                                      <  SRR4302533.5900192/94‑1 (MQ=60)

                                         TGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGT                                                     >  SRR4302533.4366010/1‑94 (MQ=60)

                                          GTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTG                                                    >  SRR4302533.3073720/1‑94 (MQ=60)

                                          GTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTG                                                    >  SRR4302533.5905268/1‑94 (MQ=60)

                                            TTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGAT                                                  <  SRR4302533.224725/94‑1 (MQ=60)

                                            TTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGAT                                                  <  SRR4302533.3638735/94‑1 (MQ=60)

                                              TCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCC                                                <  SRR4302533.4200223/94‑1 (MQ=60)

                                               CGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCA                                               >  SRR4302533.3709580/1‑94 (MQ=60)

                                                  CAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAAC                                            <  SRR4302533.5164511/94‑1 (MQ=60)

                                                  CAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGGCTACACCCAGGATAGCAGTGATCCAAAC                                            >  SRR4302533.4076218/1‑94 (MQ=60)

                                                   AGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACA                                           >  SRR4302533.843387/1‑94 (MQ=60)

                                                   AGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACA                                           >  SRR4302533.479525/1‑94 (MQ=60)

                                                   AGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACA                                           >  SRR4302533.1683157/1‑94 (MQ=60)

                                                    GTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAG                                          <  SRR4302533.543097/94‑1 (MQ=60)

                                                     TCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGC                                         >  SRR4302533.4046820/1‑94 (MQ=60)

                                                      CAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCA                                        >  SRR4302533.2083614/1‑94 (MQ=60)

                                                       AGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACTCAGGATAGCAGTGATCCAAACAGCAT                                       <  SRR4302533.1901840/94‑1 (MQ=60)

                                                       AGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCAT                                       >  SRR4302533.4359488/1‑94 (MQ=60)

                                                       AGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCAT                                       <  SRR4302533.5461663/94‑1 (MQ=60)

                                                       AGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCAT                                       <  SRR4302533.1300366/94‑1 (MQ=60)

                                                        GGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATT                                      <  SRR4302533.2818010/94‑1 (MQ=60)

                                                          GTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGC                                    >  SRR4302533.2796553/1‑94 (MQ=60)

                                                          GTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGC                                    >  SRR4302533.1585382/1‑94 (MQ=60)

                                                          GTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGC                                    <  SRR4302533.5803710/94‑1 (MQ=60)

                                                          GTAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGC                                    >  SRR4302533.2041302/1‑94 (MQ=60)

                                                           TAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACGCCCAGGATAGCAGTGATCCAAACAGCATTGCG                                   <  SRR4302533.750567/94‑1 (MQ=60)

                                                           TAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCG                                   <  SRR4302533.5374127/94‑1 (MQ=60)

                                                           TAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCG                                   >  SRR4302533.781786/1‑94 (MQ=60)

                                                           TAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCG                                   <  SRR4302533.691778/94‑1 (MQ=60)

                                                           TAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCG                                   <  SRR4302533.3048663/94‑1 (MQ=60)

                                                           TAATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCG                                   >  SRR4302533.4378810/1‑94 (MQ=60)

                                                            AATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGA                                  <  SRR4302533.3155400/94‑1 (MQ=60)

                                                            AATGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGA                                  >  SRR4302533.4854622/1‑94 (MQ=60)

                                                              TGCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAG                                <  SRR4302533.4765849/94‑1 (MQ=60)

                                                               GCTCATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGA                               >  SRR4302533.3946282/1‑94 (MQ=60)

                                                                   ATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGC                           <  SRR4302533.2194559/94‑1 (MQ=60)

                                                                   ATGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGC                           <  SRR4302533.3502418/94‑1 (MQ=60)

                                                                    TGACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCG                          >  SRR4302533.3604030/1‑94 (MQ=60)

                                                                     GACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGA                         <  SRR4302533.485268/94‑1 (MQ=60)

                                                                     GACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGA                         >  SRR4302533.4525425/1‑94 (MQ=60)

                                                                      ACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGAC                        <  SRR4302533.6189857/94‑1 (MQ=60)

                                                                      ACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGAC                        <  SRR4302533.6347176/94‑1 (MQ=60)

                                                                      ACATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGAC                        <  SRR4302533.657681/94‑1 (MQ=60)

                                                                       CATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACA                       <  SRR4302533.1316588/94‑1 (MQ=60)

                                                                       CATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACA                       <  SRR4302533.5139422/94‑1 (MQ=60)

                                                                       CATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACA                       >  SRR4302533.5509167/1‑94 (MQ=60)

                                                                       CATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACA                       >  SRR4302533.1313356/1‑94 (MQ=60)

                                                                        ATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAA                      >  SRR4302533.3493281/1‑94 (MQ=60)

                                                                        ATGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGACTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAA                      >  SRR4302533.6264025/1‑94 (MQ=60)

                                                                         TGAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAAC                     <  SRR4302533.5330914/94‑1 (MQ=60)

                                                                          GAGCGTCTACTTTGTGAAGGCCGGTGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACA                    <  SRR4302533.22165/94‑1 (MQ=60)

                                                                          GAGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACA                    >  SRR4302533.4670929/1‑94 (MQ=60)

                                                                           AGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACAC                   <  SRR4302533.6170632/94‑1 (MQ=60)

                                                                           AGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACAC                   >  SRR4302533.2247244/1‑94 (MQ=60)

                                                                           AGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACAC                   >  SRR4302533.2665882/1‑94 (MQ=60)

                                                                           AGCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACAC                   >  SRR4302533.5420835/1‑94 (MQ=60)

                                                                            GCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACT                  <  SRR4302533.4954129/94‑1 (MQ=60)

                                                                            GCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACT                  <  SRR4302533.2576642/94‑1 (MQ=60)

                                                                            GCGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGCATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACT                  <  SRR4302533.3393031/94‑1 (MQ=60)

                                                                             CGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTG                 <  SRR4302533.2245068/94‑1 (MQ=60)

                                                                             CGTCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTG                 >  SRR4302533.6154533/1‑94 (MQ=60)

                                                                               TCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGA               <  SRR4302533.4408934/94‑1 (MQ=60)

                                                                               TCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGA               <  SRR4302533.4275969/94‑1 (MQ=60)

                                                                               TCTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGA               <  SRR4302533.312565/94‑1 (MQ=60)

                                                                                CTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAA              >  SRR4302533.401666/1‑94 (MQ=60)

                                                                                CTACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAA              >  SRR4302533.2814144/1‑94 (MQ=60)

                                                                                 TACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAAT             >  SRR4302533.139435/1‑94 (MQ=60)

                                                                                  ACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATT            >  SRR4302533.1661826/1‑94 (MQ=60)

                                                                                  ACTTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTAAACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATT            <  SRR4302533.5988587/94‑1 (MQ=60)

                                                                                    TTTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTA          >  SRR4302533.2053714/1‑94 (MQ=60)

                                                                                     TTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAA         <  SRR4302533.840428/94‑1 (MQ=60)

                                                                                     TTGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAA         <  SRR4302533.4954682/94‑1 (MQ=60)

                                                                                      TGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAAT        <  SRR4302533.3254243/94‑1 (MQ=60)

                                                                                      TGTGAAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAAT        <  SRR4302533.4909584/94‑1 (MQ=60)

                                                                                          AAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTA    <  SRR4302533.3706850/94‑1 (MQ=60)

                                                                                          AAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTA    <  SRR4302533.2964294/94‑1 (MQ=60)

                                                                                          AAGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTA    >  SRR4302533.5185338/1‑94 (MQ=60)

                                                                                          AAGGCCGGGGATAATAACTGGCAGATCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTA    <  SRR4302533.502703/94‑1 (MQ=60)

                                                                                           AGGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTAA   >  SRR4302533.4091072/1‑94 (MQ=60)

                                                                                            GGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTAAT  >  SRR4302533.3083442/1‑94 (MQ=60)

                                                                                            GGCCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTAAT  <  SRR4302533.859086/94‑1 (MQ=60)

GCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGATAGCAGTGATCCAAACAGCATTGCGAAGACAGCGACAACACTGGAATTTAATGCTAAT  >  NC_000913/1132310‑1132495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`