Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,875	T→C	L360P (CTG→CCG)	flgE →	hook protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,875	0	T	C	100.0%	632.1 / NA	197	L360P (CTG→CCG)	flgE	hook protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (77/120); total (77/120)

Only 100 of 201 total aligned reads displayed.

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCgg                                                                                         >  2:4729604/1‑93 (MQ=255)

    cGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGc                                                                                     >  1:2509632/1‑93 (MQ=255)

      tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGt                                                                                   >  2:5695854/1‑93 (MQ=255)

        tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc                                                                                 <  2:5939691/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:1389899/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:1594125/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:8116427/93‑1 (MQ=255)

           tctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAc                                                                              <  1:3839225/93‑1 (MQ=255)

            ctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACg                                                                             >  2:7504560/1‑93 (MQ=255)

            ctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACg                                                                             <  2:2012461/93‑1 (MQ=255)

             tgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGt                                                                            >  2:3428443/1‑93 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           >  2:9273812/1‑93 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  1:952403/93‑1 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           >  1:299955/1‑93 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  2:604809/93‑1 (MQ=255)

               cGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCg                                                                          <  2:5071452/93‑1 (MQ=255)

                 aCGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGGACCCTGACAAACGGTGGGCCGGAAGCGTCCAACGTCGAt                                                                        >  2:5262214/1‑93 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGCACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtct                                                                      <  1:5058763/93‑1 (MQ=255)

                    cAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtctc                                                                     <  1:7874977/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  1:5111948/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  1:1183476/93‑1 (MQ=255)

                      aTCTTCTGGGGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  1:7466803/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  2:3132215/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  1:9180704/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  1:6407361/93‑1 (MQ=255)

                       tgttctGGCGTGGCGCTGTTGGGGACAGCCTGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:7117260/91‑1 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:9898051/93‑1 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:5782129/93‑1 (MQ=255)

                         ttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaa                                                                <  2:8045381/93‑1 (MQ=255)

                           ctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAg                                                              >  1:6817940/1‑93 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            >  1:4593349/1‑93 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            <  2:1182277/93‑1 (MQ=255)

                              gcgtggcgGTGTTTGGGACAGCCCGGACGGGAAACTTTGGCCCCCTGACCAACGGTGCGCCGGAAGCGGCCAACGTCGATCTCAGTAAAAAAc                                                           <  2:7228117/93‑1 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  1:5073276/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  1:8662912/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  2:1746798/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGGGCGGCGGGAGCGTCCAACGTCGATATCAGTAAAGaag                                                           >  1:5332960/1‑92 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTCAAGAACTg                                                         >  2:775711/1‑93 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         <  1:6339731/93‑1 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         <  1:148516/93‑1 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                       >  1:6457791/1‑93 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                       >  1:6534184/1‑93 (MQ=255)

                                     gcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCaa                                                    >  2:5960732/1‑93 (MQ=255)

                                      cTGTGGGGGACAGCCGGGACGGGAATCTTTGGCTCCCTGACCAACGGTGCGCCTGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAat                                                   <  1:3603753/93‑1 (MQ=255)

                                       tGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAata                                                  <  1:2610736/93‑1 (MQ=255)

                                       tGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAata                                                  <  2:1720342/93‑1 (MQ=255)

                                        gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                 >  1:8554875/1‑93 (MQ=255)

                                         ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg                                                <  1:10037638/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  2:3174665/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:986063/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:9355620/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:4234349/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:8611186/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:2449517/93‑1 (MQ=255)

                                            gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc                                             <  1:8261294/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  2:5791383/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  1:7423024/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  1:2101604/93‑1 (MQ=255)

                                               gcAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGtt                                          <  2:5413923/92‑1 (MQ=255)

                                               aCAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGtt                                          <  2:5827599/93‑1 (MQ=255)

                                                cAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTg                                         >  1:1567472/1‑93 (MQ=255)

                                                 aGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                        <  2:1129864/93‑1 (MQ=255)

                                                 aGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                        >  2:1060042/1‑93 (MQ=255)

                                                  gCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGcc                                       >  1:3984820/1‑93 (MQ=255)

                                                   ccGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGccc                                      <  1:851145/93‑1 (MQ=255)

                                                   ccGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGccc                                      <  1:9807571/93‑1 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  1:8000856/1‑93 (MQ=255)

                                                      ggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGc                                   >  2:6920183/1‑93 (MQ=255)

                                                       gacgggaAACTTTGGGACACTGACCAACGGTGCGCCGGAAGCGTCCAAAGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCg                                  >  2:9635755/1‑93 (MQ=255)

                                                       gacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCg                                  >  2:1421748/1‑93 (MQ=255)

                                                        gcgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGt                                 <  2:7080522/92‑1 (MQ=255)

                                                        acgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGACGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGACCACCGt                                 >  2:5137649/1‑93 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               <  1:5548497/93‑1 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               <  2:6956875/93‑1 (MQ=255)

                                                           ggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAc                              >  2:1843480/1‑93 (MQ=255)

                                                           ggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAc                              <  2:3087467/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  2:4996621/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  1:4878270/93‑1 (MQ=255)

                                                                 tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg                        >  2:8597659/1‑93 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  2:3501532/93‑1 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  1:7006927/93‑1 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  2:3331124/93‑1 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       >  1:452182/1‑93 (MQ=255)

                                                                   tGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTc                      <  1:6076782/93‑1 (MQ=255)

                                                                     gCACCCTGACCACCGGTGCCCCTGAGGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCTAGCGTAACTAACAGTCTa                    <  2:5603281/93‑1 (MQ=255)

                                                                     gCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTa                    >  1:9176767/1‑93 (MQ=255)

                                                                       ccccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAc                  <  2:7417884/92‑1 (MQ=255)

                                                                       aCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAc                  >  1:9096439/1‑93 (MQ=255)

                                                                         ccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATCATCTATTCCCAGCTTAACTATCAGCGTAACGc                >  1:3297417/1‑93 (MQ=255)

                                                                          cTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGcc               >  1:765217/1‑93 (MQ=255)

                                                                          cTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGcc               >  2:3991488/1‑93 (MQ=255)

                                                                              ccAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGa           >  1:240232/1‑93 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc          >  1:8851786/1‑93 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc          >  2:8224995/1‑93 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc          <  2:4577382/93‑1 (MQ=255)

                                                                                aaCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAcc         <  2:7929127/93‑1 (MQ=255)

                                                                                 aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCa        <  2:4678182/93‑1 (MQ=255)

                                                                                   ggTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATc      <  2:3744995/93‑1 (MQ=255)

                                                                                   ggTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATc      <  1:6525158/93‑1 (MQ=255)

                                                                                    gTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCa     >  2:8738503/1‑93 (MQ=255)

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCA  >  NC_000913/1132782‑1132968

GCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCC                                                                                               <  SRR4302540.3187199/94‑1 (MQ=60)

 CGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCG                                                                                              >  SRR4302540.5952315/1‑94 (MQ=60)

    CAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGAACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAA                                                                                           >  SRR4302540.7783783/1‑94 (MQ=60)

     AACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAG                                                                                          >  SRR4302540.3850555/1‑94 (MQ=60)

      ACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGC                                                                                         <  SRR4302540.6870228/94‑1 (MQ=60)

      ACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGC                                                                                         >  SRR4302540.2536736/1‑94 (MQ=60)

      ACGCCTGGACTGCGACGCAATCATCTGGCGTGGCTCTGTGAGGGGCAGCCGGGACGGGAACCTTTGGCACCCTGACCAACGGTGCGCCGGAAGC                                                                                         <  SRR4302540.8477253/94‑1 (MQ=55)

        GTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGT                                                                                       >  SRR4302540.5759243/1‑94 (MQ=60)

         TCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTC                                                                                      <  SRR4302540.1178938/94‑1 (MQ=60)

           TGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCA                                                                                    <  SRR4302540.502249/94‑1 (MQ=60)

             GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC                                                                                  >  SRR4302540.8693088/1‑94 (MQ=60)

             GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC                                                                                  <  SRR4302540.8210620/94‑1 (MQ=60)

             GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC                                                                                  <  SRR4302540.1611543/94‑1 (MQ=60)

             GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC                                                                                  <  SRR4302540.4271179/94‑1 (MQ=60)

             GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC                                                                                  >  SRR4302540.6479022/1‑94 (MQ=60)

             GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC                                                                                  <  SRR4302540.1404774/94‑1 (MQ=60)

              TCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACG                                                                                 <  SRR4302540.3880977/94‑1 (MQ=60)

               CTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGT                                                                                >  SRR4302540.2329070/1‑94 (MQ=60)

                TGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTC                                                                               >  SRR4302540.302920/1‑94 (MQ=60)

                 GCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCG                                                                              >  SRR4302540.8155572/1‑94 (MQ=60)

                 GCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCG                                                                              <  SRR4302540.962293/94‑1 (MQ=60)

                    ACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATC                                                                           <  SRR4302540.8246785/94‑1 (MQ=60)

                     CGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACTCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCT                                                                          <  SRR4302540.2111006/94‑1 (MQ=60)

                     CGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCT                                                                          <  SRR4302540.751429/94‑1 (MQ=60)

                     CGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCT                                                                          <  SRR4302540.1463502/94‑1 (MQ=60)

                      cgcgtgttctggcttggcgcagtggtGGACAGCCGTGACTGCAAACTTTGGCCCCCTGCCCAACGGTGCTCCGGAAGCGTCCAACGTCGATCTC                                                                         <  SRR4302540.5113460/68‑1 (MQ=28)

                      GCAATCTTCTGGCGTGGCGCTGTTGGGCACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTC                                                                         <  SRR4302540.5113461/94‑1 (MQ=60)

                       CAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCA                                                                        <  SRR4302540.7966962/94‑1 (MQ=60)

                        AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAG                                                                       <  SRR4302540.1195696/94‑1 (MQ=60)

                        AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAG                                                                       <  SRR4302540.5167280/94‑1 (MQ=60)

                        AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAG                                                                       >  SRR4302540.10004080/1‑94 (MQ=60)

                        AATCTTCTGGCGTCGCCCTGTTGGGGACAGGCCGGACGGGAAACTTTGGCGCTCTGTCCAACTGTGCGACGGAAGCGTCCAACGTCGATCTCAG                                                                       <  SRR4302540.5167279/94‑1 (MQ=42)

                         ATCTTCTGGGGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT                                                                      <  SRR4302540.7550100/94‑1 (MQ=60)

                         ATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT                                                                      <  SRR4302540.9290814/94‑1 (MQ=60)

                         ATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT                                                                      <  SRR4302540.4316034/94‑1 (MQ=60)

                         ATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT                                                                      >  SRR4302540.5161246/1‑94 (MQ=60)

                         ATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT                                                                      <  SRR4302540.6478675/94‑1 (MQ=60)

                         ATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT                                                                      >  SRR4302540.6600288/1‑94 (MQ=60)

                          TGTTCTGGCGTGGCGCTGTTGGGGACAGCCTGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTA                                                                     <  SRR4302540.7196494/94‑1 (MQ=60)

                          TCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTA                                                                     <  SRR4302540.5846003/94‑1 (MQ=60)

                          TCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTA                                                                     <  SRR4302540.9396057/94‑1 (MQ=60)

                          TCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTA                                                                     <  SRR4302540.10013665/94‑1 (MQ=60)

                            tgaTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGAGCAACGGTGCGGCGGAAGCCTCCAACGTCGATCTCAGTAAA                                                                   <  SRR4302540.2726658/91‑1 (MQ=60)

                            TTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAA                                                                   <  SRR4302540.8747658/94‑1 (MQ=60)

                             TCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAG                                                                  >  SRR4302540.6893408/1‑94 (MQ=60)

                             TCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAG                                                                  <  SRR4302540.2533691/94‑1 (MQ=60)

                               TGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAA                                                                >  SRR4302540.4642772/1‑94 (MQ=60)

                               TGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAA                                                                <  SRR4302540.6532113/94‑1 (MQ=60)

                                GGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAC                                                               <  SRR4302540.6441573/94‑1 (MQ=60)

                                GGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAC                                                               >  SRR4302540.5128122/1‑94 (MQ=60)

                                GGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAC                                                               >  SRR4302540.8763528/1‑94 (MQ=60)

                                GGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGGGCGGCGGGAGCGTCCAACGTCGATATCAGTAAAGAAG                                                               >  SRR4302540.5391402/1‑94 (MQ=60)

                                  CGTGGCGCGGGTGGGGACGGCCGGGACGGGAAACTCTGGCATCCTGACCAGCGGTGCGCTGGAAGCGTACAAGGTCGATCTCAGTAAAGAACTG                                                             <  SRR4302540.10120767/94‑1 (MQ=60)

                                   GTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGG                                                            <  SRR4302540.150050/94‑1 (MQ=60)

                                   GTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGG                                                            <  SRR4302540.6410336/94‑1 (MQ=60)

                                    TGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGT                                                           >  SRR4302540.6529675/1‑94 (MQ=60)

                                    TGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGT                                                           >  SRR4302540.6606714/1‑94 (MQ=60)

                                      GCGCTGGTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCA                                                         <  SRR4302540.5952700/94‑1 (MQ=60)

                                        GCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAAT                                                       >  SRR4302540.9253748/1‑94 (MQ=60)

                                         CTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATA                                                      >  SRR4302540.5116384/1‑94 (MQ=60)

                                         CTGTGGGGGACAGCCGGGACGGGAATCTTTGGCTCCCTGACCAACGGTGCGCCTGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATA                                                      <  SRR4302540.3643131/94‑1 (MQ=60)

                                          TGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATAT                                                     <  SRR4302540.2638918/94‑1 (MQ=60)

                                          TGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATAT                                                     >  SRR4302540.8654236/1‑94 (MQ=60)

                                           GTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATG                                                    <  SRR4302540.9821571/94‑1 (MQ=60)

                                            TTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGA                                                   <  SRR4302540.10154362/94‑1 (MQ=60)

                                              GGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATC                                                 <  SRR4302540.2475892/94‑1 (MQ=60)

                                              GGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATC                                                 <  SRR4302540.9467049/94‑1 (MQ=60)

                                              GGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATC                                                 <  SRR4302540.996141/94‑1 (MQ=60)

                                              GGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATC                                                 <  SRR4302540.8711244/94‑1 (MQ=60)

                                              GGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATC                                                 <  SRR4302540.4280427/94‑1 (MQ=60)

                                               GGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCG                                                <  SRR4302540.8357296/94‑1 (MQ=60)

                                                 GACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTT                                              <  SRR4302540.9119943/94‑1 (MQ=60)

                                                 GACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTT                                              <  SRR4302540.2124163/94‑1 (MQ=60)

                                                 GACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTT                                              <  SRR4302540.7505710/94‑1 (MQ=60)

                                                  ACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGCTCGTTG                                             >  SRR4302540.47566/1‑94 (MQ=60)

                                                  ACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTG                                             >  SRR4302540.1584668/1‑94 (MQ=60)

                                                    AGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCC                                           >  SRR4302540.4027729/1‑94 (MQ=60)

                                                      CCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCA                                         <  SRR4302540.860180/94‑1 (MQ=60)

                                                      CCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCA                                         <  SRR4302540.9922366/94‑1 (MQ=60)

                                                      CCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCA                                         <  SRR4302540.7158337/94‑1 (MQ=60)

                                                       CGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAG                                        >  SRR4302540.528672/1‑94 (MQ=60)

                                                       CGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAG                                        >  SRR4302540.8093979/1‑94 (MQ=60)

                                                          GACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGT                                     <  SRR4302540.7411211/94‑1 (MQ=60)

                                                          GACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGT                                     <  SRR4302540.1216401/94‑1 (MQ=60)

                                                          GACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGT                                     <  SRR4302540.5442072/94‑1 (MQ=60)

                                                           ACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTA                                    >  SRR4302540.3617431/1‑94 (MQ=60)

                                                             GGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAC                                  <  SRR4302540.5609622/94‑1 (MQ=60)

                                                             GGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAC                                  <  SRR4302540.8629109/94‑1 (MQ=60)

                                                                AAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAT                               <  SRR4302540.2445610/94‑1 (MQ=60)

                                                                AAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAT                               >  SRR4302540.6996286/1‑94 (MQ=60)

                                                                  ACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCA                             <  SRR4302540.2565612/94‑1 (MQ=60)

                                                                   CTTTGGCACCCTGACCAACGGTGCTCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG                            <  SRR4302540.1531431/94‑1 (MQ=60)

                                                                   CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG                            >  SRR4302540.8026660/1‑94 (MQ=60)

                                                                   CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG                            <  SRR4302540.4930646/94‑1 (MQ=60)

                                                                    TTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGT                           >  SRR4302540.457006/1‑94 (MQ=60)

                                                                     TTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTC                          <  SRR4302540.7084696/94‑1 (MQ=60)

                                                                      TGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCT                         <  SRR4302540.6144354/94‑1 (MQ=60)

                                                                       GGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTA                        >  SRR4302540.9286834/1‑94 (MQ=60)

                                                                        GCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAA                       <  SRR4302540.4574136/94‑1 (MQ=60)

                                                                         CACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAC                      >  SRR4302540.9205734/1‑94 (MQ=60)

                                                                         CACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAC                      <  SRR4302540.3164795/94‑1 (MQ=60)

                                                                          ACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACG                     <  SRR4302540.9499779/94‑1 (MQ=60)

                                                                           CCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATCATCTATTCCCAGCTTAACTATCAGCGTAACGC                    >  SRR4302540.3333506/1‑94 (MQ=60)

                                                                            CCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCC                   >  SRR4302540.773364/1‑94 (MQ=60)

                                                                             CTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCC                  >  SRR4302540.9927768/1‑94 (MQ=60)

                                                                              TGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCA                 <  SRR4302540.9288578/94‑1 (MQ=60)

                                                                               GACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAG                <  SRR4302540.1590478/94‑1 (MQ=60)

                                                                                ACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGA               >  SRR4302540.89109/1‑94 (MQ=60)

                                                                                ACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGA               >  SRR4302540.242557/1‑94 (MQ=60)

                                                                                 CCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAC              >  SRR4302540.8954187/1‑94 (MQ=60)

                                                                                  CAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGCAACTATCAGTCTAACGCCCAGACC             >  SRR4302540.764911/1‑94 (MQ=60)

                                                                                     CGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATC          >  SRR4302540.3945984/1‑94 (MQ=60)

                                                                                      GGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCA         <  SRR4302540.8391737/94‑1 (MQ=60)

                                                                                      GGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCA         <  SRR4302540.6597627/94‑1 (MQ=60)

                                                                                      GGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCA         >  SRR4302540.6302935/1‑94 (MQ=60)

                                                                                          CGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAAC     <  SRR4302540.2946367/94‑1 (MQ=60)

                                                                                           GCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACC    <  SRR4302540.5920813/94‑1 (MQ=60)

                                                                                             CGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATGAGTCTAACGCGCAGACCATCAAAACACA  >  SRR4302540.3634736/1‑94 (MQ=60)

                                                                                             CGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCACAACCCA  >  SRR4302540.4223842/1‑94 (MQ=60)

GCGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCA  >  NC_000913/1132782‑1132968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`